BAC Information

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BAC

Clone NameB6Ng01-008J20
Chromosome10 (Build37)
Map Location 104,665,187 - 104,794,470
singlet/doubletdoublet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008J20.bB6Ng01-008J20.g
ACCDH844815DH844816
length1,1161,143
definitionDH844815|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J20, 5' end.DH844816|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,793,349 - 104,794,470)(104,665,187 - 104,666,357)
sequence
gaattcatttatttatacatgtaaattgttatcaaattcagttgtaattt
tcaaaataagaccatcatccaaaagaatctagaatataaacatatactat
atacttaaaaataaaaaaatcattttaataaatactatattaaagatttc
ttaaagaataaaatttattaattaggaaatcatgtacagatttattaaat
aaataggcattgatcatacatagtcaaatatgtacacacatgagaacaca
caaatacatacacatacacacacagagttatatactagagagaaagagag
acagacagacacttcttttgacactagaatgaattatacaggttctactt
tctagacacatctgttgccactcttataattcatttgattatcataaata
atataactaatgtcaataataataatcactgtagactgtgagtgccttct
ttgctcgcattagttaggaaaagctttcatctagcattgttaaagaagag
agaaatagctgcttcagaggtttaccttattgaccaagttacattctctg
gacacaactgtcattttctaaaaaggagtttcagtgaactaccagcgaag
aacatgtggtctaaaatagataagctttgataattaccaatattgcaaat
actgtctatgcttttgatttatttcttttttatattttttcattaatggt
ttgaattatgttccttttactgataatactgaatgataatgttaatcaca
tattcaagtaaatattgagaatttaaagcagtataatatactaatattct
cattatacaagcatatagttacttattttatacaagcgcatgtattccgt
acttatctcattgtcagtcaccgtgatgtattgaaactttcctgtgttct
tggtattctgttatttcaaaggaaaattacagaagcccaaattctccctg
ttttcattgtagcattgtggtctcagatactttagagaagttgttacact
gttcagctcttaggaaccaaatcagtgttgatattaaagaggtcgtacat
gtcatctaaatataaactcatcaaggtgttctattacattttgacaggaa
ttatgacaataagggt
gaattcttagactctcgtgacaaattaaacctcattaaaatgatttcaaa
acctataaccagttcagcattttctagtagtggaatgaaggcttggtggt
agagcatttatctagaatatactaagttctggtttcaattttcaacaatg
taaaaaaagaaaaaagccagtcacagcaacgatgtaatcctggcatgttt
ctaagtaggttgatgttgtccttcataagccaaattttaaaaatgtaaat
gcatactactctatatgtatttaagggatgtttgtattattgtgtattta
aatactttattccatatatgaaattataaaagtttaataaataaacttat
tctaaaatgcatctcttagtttaatgtaataaccatatggcagaaatgtg
ataccattgagccaaatcattctttcatgctaccaaaataacaagcaaac
aaacaaaaatataaaaaagaacaatcaaaaacaaattcagaagcaatctt
tccaaagaaacagctggttaagaatcccttttacaaagtacctgctcttc
caaacactagaccaaccttatattaaaccattcaggcaacttgagatttt
tctgaagcaaggaaaaggaaataaattctttctaaggattcttgtgagaa
gcatatttcctgtgattgcatgagtcattctaagggaaaataagcaatct
gtttcaagcagttcagaataacttgactactagatctcttgatgttcctg
ctctttgaagatgcaatacaggagattgagttcttgcatttttaagttgc
caaagatgcaatgattctttgaaagaatgattattactaaaaaaacaatt
aaatgccaaggcttttgacaacggcggataggcatttttcacatacagga
gtgaaatcatctcattttatctgccaggtctagcttgaaacaatgagaga
cactactttctgccataaatctgtgccctttcatttcccaggttattttg
agcagatcagaaccatgtgctgtggggttcagtaaggttcactgaaatgt
cctatggagatcaatgatgaaactcagtctcacttgcgcaaactgaaaaa
ttgactggccttaagggctaatccactatagggttcatgctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104793349_104794470
seq2: B6Ng01-008J20.b_45_1160 (reverse)

seq1  ACCCTTATTGTCAATAATACTGTCAAAAATGTAATAGAACACC-TGATGA  49
      |||||||||||||  | | ||||| |||||||||||||||||| ||||||
seq2  ACCCTTATTGTCATAATTCCTGTC-AAAATGTAATAGAACACCTTGATGA  49

seq1  GTATATATTAGAATGACATGTACGGAACCTCTTT-ATATC-ACACTGATT  97
      || ||||||   ||||||||||||  |||||||| ||||| |||||||||
seq2  GTTTATATTTAGATGACATGTACG--ACCTCTTTAATATCAACACTGATT  97

seq1  TGGTTCCCTAAGGGCTTGAACAGTTGTAACAACTTCTCCTAAAGTATCTG  147
      ||||| |||||| || ||||||| ||||||||||||| ||||||||||||
seq2  TGGTT-CCTAAGAGC-TGAACAG-TGTAACAACTTCT-CTAAAGTATCTG  143

seq1  AGAACCACAATGCTACAATGAAAACAGGGGAGAATTTGGGCTTCTGTAAT  197
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AG-ACCACAATGCTACAATGAAAACA-GGGAGAATTTGGGCTTCTGTAAT  191

seq1  TTTCCTTTGAAATAACAGAATACCAAGAACACAGGAAAGTTTCAATACAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGAAATAACAGAATACCAAGAACACAGGAAAGTTTCAATACAT  241

seq1  CACGGTGACTGACAATGAGATAAGTACGGAATACATGCGCTTGTATAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGACTGACAATGAGATAAGTACGGAATACATGCGCTTGTATAAAA  291

seq1  TAAGTAACTATATGCTTGTATAATGAGAATATTAGTATATTATACTGCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACTATATGCTTGTATAATGAGAATATTAGTATATTATACTGCTT  341

seq1  TAAATTCTCAATATTTACTTGAATATGTGATTAACATTATCATTCAGTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTCAATATTTACTTGAATATGTGATTAACATTATCATTCAGTAT  391

seq1  TATCAGTAAAAGGAACATAATTCAAACCATTAATGAAAAAATATAAAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTAAAAGGAACATAATTCAAACCATTAATGAAAAAATATAAAAAA  441

seq1  GAAATAAATCAAAAGCATAGACAGTATTTGCAATATTGGTAATTATCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATCAAAAGCATAGACAGTATTTGCAATATTGGTAATTATCAAA  491

seq1  GCTTATCTATTTTAGACCACATGTTCTTCGCTGGTAGTTCACTGAAACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTATTTTAGACCACATGTTCTTCGCTGGTAGTTCACTGAAACTC  541

seq1  CTTTTTAGAAAATGACAGTTGTGTCCAGAGAATGTAACTTGGTCAATAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGAAAATGACAGTTGTGTCCAGAGAATGTAACTTGGTCAATAAG  591

seq1  GTAAACCTCTGAAGCAGCTATTTCTCTCTTCTTTAACAATGCTAGATGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCTCTGAAGCAGCTATTTCTCTCTTCTTTAACAATGCTAGATGAA  641

seq1  AGCTTTTCCTAACTAATGCGAGCAAAGAAGGCACTCACAGTCTACAGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCCTAACTAATGCGAGCAAAGAAGGCACTCACAGTCTACAGTGA  691

seq1  TTATTATTATTGACATTAGTTATATTATTTATGATAATCAAATGAATTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTGACATTAGTTATATTATTTATGATAATCAAATGAATTAT  741

seq1  AAGAGTGGCAACAGATGTGTCTAGAAAGTAGAACCTGTATAATTCATTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGCAACAGATGTGTCTAGAAAGTAGAACCTGTATAATTCATTCT  791

seq1  AGTGTCAAAAGAAGTGTCTGTCTGTCTCTCTTTCTCTCTAGTATATAACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAAAAGAAGTGTCTGTCTGTCTCTCTTTCTCTCTAGTATATAACT  841

seq1  CTGTGTGTGTATGTGTATGTATTTGTGTGTTCTCATGTGTGTACATATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTATGTGTATGTATTTGTGTGTTCTCATGTGTGTACATATTT  891

seq1  GACTATGTATGATCAATGCCTATTTATTTAATAAATCTGTACATGATTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTATGATCAATGCCTATTTATTTAATAAATCTGTACATGATTTC  941

seq1  CTAATTAATAAATTTTATTCTTTAAGAAATCTTTAATATAGTATTTATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAATAAATTTTATTCTTTAAGAAATCTTTAATATAGTATTTATTA  991

seq1  AAATGATTTTTTTATTTTTAAGTATATAGTATATGTTTATATTCTAGATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTTTTTATTTTTAAGTATATAGTATATGTTTATATTCTAGATT  1041

seq1  CTTTTGGATGATGGTCTTATTTTGAAAATTACAACTGAATTTGATAACAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGATGATGGTCTTATTTTGAAAATTACAACTGAATTTGATAACAA  1091

seq1  TTTACATGTATAAATAAATGAATTC  1122
      |||||||||||||||||||||||||
seq2  TTTACATGTATAAATAAATGAATTC  1116

seq1: chr10_104665187_104666357
seq2: B6Ng01-008J20.g_66_1208

seq1  GAATTCTTAGACTCTCGTGACAAATTAAACCTCATTAAAATGATTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGACTCTCGTGACAAATTAAACCTCATTAAAATGATTTCAAA  50

seq1  ACCTATAACCAGTTCAGCATTTTCTAGTAGTGGAATGAAGGCTTGGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAACCAGTTCAGCATTTTCTAGTAGTGGAATGAAGGCTTGGTGGT  100

seq1  AGAGCATTTATCTAGAATATACTAAGTTCTGGTTTCAATTTTCAACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTATCTAGAATATACTAAGTTCTGGTTTCAATTTTCAACAATG  150

seq1  TAAAAAAAGAAAAAAGCCAGTCACAGCAACGATGTAATCCTGGCATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGAAAAAAGCCAGTCACAGCAACGATGTAATCCTGGCATGTTT  200

seq1  CTAAGTAGGTTGATGTTGTCCTTCATAAGCCAAATTTTAAAAATGTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAGGTTGATGTTGTCCTTCATAAGCCAAATTTTAAAAATGTAAAT  250

seq1  GCATACTACTCTATATGTATTTAAGGGATGTTTGTATTATTGTGTATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTACTCTATATGTATTTAAGGGATGTTTGTATTATTGTGTATTTA  300

seq1  AATACTTTATTCCATATATGAAATTATAAAAGTTTAATAAATAAACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTATTCCATATATGAAATTATAAAAGTTTAATAAATAAACTTAT  350

seq1  TCTAAAATGCATCTCTTAGTTTAATGTAATAACCATATGGCAGAAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGCATCTCTTAGTTTAATGTAATAACCATATGGCAGAAATGTG  400

seq1  ATACCATTGAGCCAAATCATTCTTTCATGCTACCAAAATAACAAGCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTGAGCCAAATCATTCTTTCATGCTACCAAAATAACAAGCAAAC  450

seq1  AAACAAAAATATAAAAAAGAACAATCAAAAACAAATTCAGAAGCAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATATAAAAAAGAACAATCAAAAACAAATTCAGAAGCAATCTT  500

seq1  TCCAAAGAAACAGCTGGTTAAGAATCCCTTTTACAAAGTACCTGCTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAAACAGCTGGTTAAGAATCCCTTTTACAAAGTACCTGCTCTTC  550

seq1  CAAACACTAGACCAACCTTATATTAAACCATTCAGGCAACTTGAGATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTAGACCAACCTTATATTAAACCATTCAGGCAACTTGAGATTTT  600

seq1  TCTGAAGCAAGGAAAAGGAAATAAATTCTTTCTAAGGATTCTTGTGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCAAGGAAAAGGAAATAAATTCTTTCTAAGGATTCTTGTGAGAA  650

seq1  GCATATTTCCTGTGATTGCATGAGTCATTCTAAGGGAAAATAAGCAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTCCTGTGATTGCATGAGTCATTCTAAGGGAAAATAAGCAATCT  700

seq1  GTTTCAAGCAGTTCAGAATAACTTGACTACTAGATCTCTTGATGTTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGCAGTTCAGAATAACTTGACTACTAGATCTCTTGATGTTCCTG  750

seq1  CTCTTTGAAGATGCAATACAGGAGATTGAGTTCTTGCATTTTTAAGTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAAGATGCAATACAGGAGATTGAGTTCTTGCATTTTTAAGTTGC  800

seq1  CAAAGATGCAATGATTCTTTGAAAGAATGATTATTACTAAAAAAACAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGCAATGATTCTTTGAAAGAATGATTATTACTAAAAAAACAATT  850

seq1  AAATGCCAAGGCTTTTGACAACGGCGGATAGGCATTTTTCACATACAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAAGGCTTTTGACAACGGCGGATAGGCATTTTTCACATACAGGA  900

seq1  GTGAAATCATCTCATTTTATCTGCCAGGTCTAGCTTGGAAACAATGAGAG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGAAATCATCTCATTTTATCTGCCAGGTCTAGCTT-GAAACAATGAGAG  949

seq1  ACACTACTTTCTGCCATAAAATCTGTGCCCTTTCAATTTCCCAGGGTTAT  1000
      ||||||||||||||||| |||||||||||||||| |||||||| ||||||
seq2  ACACTACTTTCTGCCAT-AAATCTGTGCCCTTTC-ATTTCCCA-GGTTAT  996

seq1  TTTGAGCAAGATCCAGGAACCATGTGCTGTGGGGGTACAGTTAAGGTTTC  1050
      ||||||| |||||   |||||||||||||| ||||| ||| ||||| |||
seq2  TTTGAGC-AGATC--AGAACCATGTGCTGT-GGGGTTCAG-TAAGG-TTC  1040

seq1  AACTTGAAATGTCCTATGGAAGGATCACATGATGAAAACTCAGTCCCCAA  1100
      |   ||||||||||||||||  ||||| |||||| ||||||||| | || 
seq2  A--CTGAAATGTCCTATGGA--GATCA-ATGATG-AAACTCAGT-CTCAC  1083

seq1  CTGCGGCCAATACTGAAAAAAATGACTGGGCCTTAAAGGTGCTAACTCCA  1150
       ||||  ||| |||| ||||| ||||| ||||||||  | ||||| ||||
seq2  TTGCG--CAA-ACTG-AAAAATTGACT-GGCCTTAA--GGGCTAA-TCCA  1125

seq1  CACGTGATGGGTTCATGCTAA  1171
      |   |   |||||||||||||
seq2  C---TATAGGGTTCATGCTAA  1143