BAC Information

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BAC

Clone NameB6Ng01-008L20
Chromosome13 (Build37)10 (Build37)
Map Location 105,186,922 - 105,187,358104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneAdamts6
Upstream geneLOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk
Downstream geneLOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008L20.bB6Ng01-008L20.g
ACCDH844893DH844894
length431811
definitionDH844893|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L20, 5' end.DH844894|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,186,922 - 105,187,358)(104,053,903 - 104,054,363)
sequence
tgctcagctttcctctgtgcaataaaccacacaaactgcatctaaggaga
gagcctaaaataatttatcagaaagcagacatcacataattagctcatat
gtctagcatggtaaatcttatttgcagtgtatggcaaaaaaaaaaagttt
tcttttaattcaagcatttataggtttttgttggtatagtttataaatta
ttaaacattaacaaattaaatgtgctataaaagtgatatgtttatatgga
taacaatagggaacagttatatagttaaatactgtcagcagaatcacaca
attaagaagttgaatgttaaataaaatatgggacacttagaaggtaatca
tatcatcatcctaattcttgcgaatatcatatgccccagtacaggggaac
gccagggccaggtagtgggagtgagtgtgtt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattggtggg
attgcaggcttgtacaaccactctggaaatcagtctggcggttcctcaga
aaattggacatagtactaccagaggatccagcaatacctctcctgggcat
atatccagaagatgccccaactggtaagaaggacacatgctccactatgt
tcatagcagccttatttataatagccagaagctggaaagaacccagatgc
ccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgga
gtactactcagctattaaaaagaaagtgatttctaattgaggtgcaaaga
aagatttgacaaaatgaatcagagataggatatgccaaattcccataaaa
caacaggaaagaaggtacttaagagcagttcaggaaaaaagaaaggatgg
atggtgtgtgtgtatggcagttttaccaggagagttttacagagacgggt
tgcaaagagtaagttagatatagtcaagattgaatgagccagagaatgag
aaagccaggagactcgaacatattgccaacgttagtactaggccacaaca
attcattcataagcagagaaaagctggattgattaagtcagcttggagga
taagtggcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_105186922_105187358
seq2: B6Ng01-008L20.b_44_480 (reverse)

seq1  AACACACTCACTCCCACTACCTGGCCCTGGCGTTCCCCTGTACTGGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTCACTCCCACTACCTGGCCCTGGCGTTCCCCTGTACTGGGGCA  50

seq1  TATGATATTCGCAAGAATTAGGATGATGATATGATTACCTTCTAAGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATTCGCAAGAATTAGGATGATGATATGATTACCTTCTAAGTGTC  100

seq1  CCATATTTTATTTAACATTCAACTTCTTAATTGTGTGATTCTGCTGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTATTTAACATTCAACTTCTTAATTGTGTGATTCTGCTGACAG  150

seq1  TATTTAACTATATAACTGTTCCCTATTGTTATCCATATAAACATATCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACTATATAACTGTTCCCTATTGTTATCCATATAAACATATCACT  200

seq1  TTTATAGCACATTTAATTTGTTAATGTTTAATAATTTATAAACTATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGCACATTTAATTTGTTAATGTTTAATAATTTATAAACTATACCA  250

seq1  ACAAAAACCTATAAATGCTTGAATTAAAAGAAAACTTTTTTTTTTTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACCTATAAATGCTTGAATTAAAAGAAAACTTTTTTTTTTTGCCA  300

seq1  TACACTGCAAATAAGATTTACCATGCTAGACATATGAGCTAATTATGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGCAAATAAGATTTACCATGCTAGACATATGAGCTAATTATGTGA  350

seq1  TGTCTGCTTTCTGATAAATTATTTTAGGCTCTCTCCTTAGATGCAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTTTCTGATAAATTATTTTAGGCTCTCTCCTTAGATGCAGTTTG  400

seq1  TGTGGTTTATTGCACAGAGGAAAGCTGAGCAGAATTC  437
      |||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTATTGCACAGAGGAAAGCTGAGCAGAATTC  437

seq1: chr10_104053903_104054363
seq2: B6Ng01-008L20.g_66_534 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCTG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCAC---CAATGGAGGAGTGTTCCTCTTTC  297

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  347

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  397

seq1  CTGATGATTAAGGATGTTGAACA-TTTTTTCAGGTGCTTCTCTGCCATTC  439
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTTCAGGTGCTTCTCTGCCATTC  447

seq1  GGTATTCCTCAGGTGAGAATTC  461
      ||||||||||||||||||||||
seq2  GGTATTCCTCAGGTGAGAATTC  469