BAC Information

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BAC

Clone NameB6Ng01-009E15
Chromosome10 (Build37)
Map Location 75,080,272 - 75,217,663
singlet/doubletdoublet
Overlap geneSusd2, Cabin1
Upstream genePcdh15, EG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1
Downstream geneDdt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009E15.bB6Ng01-009E15.g
ACCDH845272DH845273
length8651,016
definitionDH845272|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E15, 5' end.DH845273|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,216,800 - 75,217,663)(75,080,272 - 75,081,291)
sequence
gaattccttcctagattcgaattgcagccttaaatgccagctccacgatt
gaggatgaccatgaaggaagcttcaaaagtcacaaaatccagacaaagga
ggctcaggtatgcactctgaggtctgcttccgaggaagctcctgctgctc
agcttaaatgaatcccttgtgtcctcagaggagttgtaagggggatggcg
cgctgcagacggccgcctctccacctcaggtcggacttgtttccctcggg
agatggtcatgctgaagaactaactgaatgctctttgtgttgttgccttt
tacctaccacctgccctcccccttgtgtgtgcgtgcgtgcgtgtgcacac
gggactctacagtaatgaggtctgagcactgagtagtagattttctttga
ctgcagaggctgtagctgacagcttagcagtcactcagagcctccctttg
cgtacatttggatgtgaaaggctctgttctgtgtgctgggaagacgtctc
cacgtgaaaggctctgctctgggtggtgtgacgtcatctccttcttggtt
gcaggaagcagaagcctttgccctataccacaaggccctggatctacaaa
aacatgacaggttcgaggagtccgccaaggcctaccacgagcttctggag
gctcgcctgctgcgggaggtgaggcactggggctggggtttgttttgttt
gtttgagacaaagtcttaactttgaagtccaggctagtccgagactcagg
ttctcctaggcttgggttataggcatgtaactctctacccagtgcctttc
agtgtccatgtctctgttttacacatgtggacatatgtgtgtatgtttgg
ttggttatagttttg
gaattctagaacagccaggtctacacagagaaaacctggctcaaacaaaa
caaaacaaaacaaaacaaaaccaatccaaagtttcccagaacactcacac
ggcagctcacaactgtctgcaactcaagtaccagtggatttgactccctc
acacagacatacacgcagatcaaacaccaacacaaacaaacaaacaaatc
ctttgtcctcttgattagagaagccatgaagatccagagtttggccttta
aatagcggacacgcagcaagaggagggtttacacagaaggaaatgtcctc
cgtgcttccaagggaagccacatggtcagcaagatcccaaatcaaccctg
tagatgacacacttcatagaggaaagactgaagaagccagtggaccccta
agtccctagagtaagctctaaaatgccttatctgacttcaacaactacaa
acaaccagtccctccttgacaactgaatggtcttaagcatccaacaggaa
atacacccaaaagtaaaacgattggtcaccatagaaagcaagaggaagac
taaactttagaggaatgatgactcaggcctctggacctctattggcatgg
tggataggtgattacatgctagctcttatctgcacctgacagttcataaa
gcacactgctaaaatctactaaggccttcctctgattcaccctgtctctc
aatctacccaggggactgagtctaattaaagtctagttaaagactctaac
ccagccgttcttacctaggggatcgagcaatctcattgggctcccctaag
gccatcccaatacacagatattacatttttgattcgtagctagcaaaatt
acagttatggagtagcaacaaaaataatttgtttggggggggaggagtca
ctatacacgtggaactgtgtttcagttgcgccttaggaaggttgagagcc
actgcactaacttctgactcccaaactttccactgggggctttttgggag
cagagaacagggcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_75216800_75217663
seq2: B6Ng01-009E15.b_48_911 (reverse)

seq1  AAAACTATAACCAACCAAACATACACACATATGTCCACATGTGTAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATAACCAACCAAACATACACACATATGTCCACATGTGTAAAACA  50

seq1  GAGACATGGACACTGAAAGGCACTGGGTAGGGAGTTACATGCCTATAACC  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGACATGGACACTGAAAGGCACTGGGTAGAGAGTTACATGCCTATAACC  100

seq1  CAAGCCTAGGAGAACCCTGAGTCTCGGGCTAGCCTGGACTTCAAAGTTAA  150
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  CAAGCCTAGGAGAA-CCTGAGTCTCGGACTAGCCTGGACTTCAAAGTTAA  149

seq1  GACTTTGTCTCAAACAAACAAAACAAACCCCAG-CCCAGTGCCTCACCTC  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACTTTGTCTCAAACAAACAAAACAAACCCCAGCCCCAGTGCCTCACCTC  199

seq1  CCGCAGCAGGCGAGCCTCCAGAAGCTCGTGGTAGGCCTTGGCGGACTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCAGGCGAGCCTCCAGAAGCTCGTGGTAGGCCTTGGCGGACTCCT  249

seq1  CGAACCTGTCATGTTTTTGTAGATCCAGGGCCTTGTGGTATAGGGCAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCTGTCATGTTTTTGTAGATCCAGGGCCTTGTGGTATAGGGCAAAG  299

seq1  GCTTCTGCTTCCTGCAACCAAGAAGGAGATGACGTCACACCACCCAGAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCTTCCTGCAACCAAGAAGGAGATGACGTCACACCACCCAGAGC  349

seq1  AGAGCCTTTCACGTGGAGACGTCTTCCCAGCACACAGAACAGAGCCTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTTCACGTGGAGACGTCTTCCCAGCACACAGAACAGAGCCTTTC  399

seq1  ACATCCAAATGTACGCAAAGGGAGGCTCTGAGTGACTGCTAAGCTGTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAAATGTACGCAAAGGGAGGCTCTGAGTGACTGCTAAGCTGTCAG  449

seq1  CTACAGCCTCTGCAGTCAAAGAAAATCTACTACTCAGTGCTCAGACCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCTCTGCAGTCAAAGAAAATCTACTACTCAGTGCTCAGACCTCA  499

seq1  TTACTGTAGAGTCCCGTGTGCACACGCACGCACGCACACACAAGGGGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTAGAGTCCCGTGTGCACACGCACGCACGCACACACAAGGGGGAG  549

seq1  GGCAGGTGGTAGGTAAAAGGCAACAACACAAAGAGCATTCAGTTAGTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGTAGGTAAAAGGCAACAACACAAAGAGCATTCAGTTAGTTCT  599

seq1  TCAGCATGACCATCTCCCGAGGGAAACAAGTCCGACCTGAGGTGGAGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGACCATCTCCCGAGGGAAACAAGTCCGACCTGAGGTGGAGAGG  649

seq1  CGGCCGTCTGCAGCGCGCCATCCCCCTTACAACTCCTCTGAGGACACAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGTCTGCAGCGCGCCATCCCCCTTACAACTCCTCTGAGGACACAAG  699

seq1  GGATTCATTTAAGCTGAGCAGCAGGAGCTTCCTCGGAAGCAGACCTCAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATTTAAGCTGAGCAGCAGGAGCTTCCTCGGAAGCAGACCTCAGA  749

seq1  GTGCATACCTGAGCCTCCTTTGTCTGGATTTTGTGACTTTTGAAGCTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATACCTGAGCCTCCTTTGTCTGGATTTTGTGACTTTTGAAGCTTCC  799

seq1  TTCATGGTCATCCTCAATCGTGGAGCTGGCATTTAAGGCTGCAATTCGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTCATCCTCAATCGTGGAGCTGGCATTTAAGGCTGCAATTCGAA  849

seq1  TCTAGGAAGGAATTC  864
      |||||||||||||||
seq2  TCTAGGAAGGAATTC  864

seq1: chr10_75080272_75081291
seq2: B6Ng01-009E15.g_68_1083

seq1  GAATTCTAGAACAGCCAGGTCTACACAGAGAAAACCTGGCTCAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAACAGCCAGGTCTACACAGAGAAAACCTGGCTCAAACAAAA  50

seq1  CAAAACAAAACAAAACAAAACCAATCCAAAGTTTCCCAGAACACTCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAACCAATCCAAAGTTTCCCAGAACACTCACAC  100

seq1  GGCAGCTCACAACTGTCTGCAACTCAAGTACCAGTGGATTTGACTCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCACAACTGTCTGCAACTCAAGTACCAGTGGATTTGACTCCCTC  150

seq1  ACACAGACATACACGCAGATCAAACACCAACACAAACAAACAAACAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACATACACGCAGATCAAACACCAACACAAACAAACAAACAAATC  200

seq1  CTTTGTCCTCTTGATTAGAGAAGCCATGAAGATCCAGAGTTTGGCCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCTCTTGATTAGAGAAGCCATGAAGATCCAGAGTTTGGCCTTTA  250

seq1  AATAGCGGACACGCAGCAAGAGGAGGGTTTACACAGAAGGAAATGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCGGACACGCAGCAAGAGGAGGGTTTACACAGAAGGAAATGTCCTC  300

seq1  CGTGCTTCCAAGGGAAGCCACATGGTCAGCAAGATCCCAAATCAACCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTTCCAAGGGAAGCCACATGGTCAGCAAGATCCCAAATCAACCCTG  350

seq1  TAGATGACACACTTCATAGAGGAAAGACTGAAGAAGCCAGTGGACCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGACACACTTCATAGAGGAAAGACTGAAGAAGCCAGTGGACCCCTA  400

seq1  AGTCCCTAGAGTAAGCTCTAAAATGCCTTATCTGACTTCAACAACTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTAGAGTAAGCTCTAAAATGCCTTATCTGACTTCAACAACTACAA  450

seq1  ACAACCAGTCCCTCCTTGACAACTGAATGGTCTTAAGCATCCAACAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGTCCCTCCTTGACAACTGAATGGTCTTAAGCATCCAACAGGAA  500

seq1  ATACACCCAAAAGTAAAACGATTGGTCACCATAGAAAGCAAGAGGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCCAAAAGTAAAACGATTGGTCACCATAGAAAGCAAGAGGAAGAC  550

seq1  TAAACTTTAGAGGAATGATGACTCAGGCCTCTGGACCTCTATTGGCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTAGAGGAATGATGACTCAGGCCTCTGGACCTCTATTGGCATGG  600

seq1  TGGATAGGTGATTACATGCTAGCTCTTATCTGCACCTGACAGTTCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGGTGATTACATGCTAGCTCTTATCTGCACCTGACAGTTCATAAA  650

seq1  GCACACTGCTAAAATCTACTAAGGCCTTCCTCTGATTCACCCTGTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGCTAAAATCTACTAAGGCCTTCCTCTGATTCACCCTGTCTCTC  700

seq1  AATCTACCCAGGGGACTGAGTCTAATTAAAGTCTAGTTAAAGACTCTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACCCAGGGGACTGAGTCTAATTAAAGTCTAGTTAAAGACTCTAAC  750

seq1  CCAGCCGTTCTTACCTAGGGGATCGAGCAATCTCATTGGGCTCCCCTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCGTTCTTACCTAGGGGATCGAGCAATCTCATTGGGCTCCCCTAAG  800

seq1  GCCATCCCAATACACAGATATTACA-TTTTGATTCGTAGCTAGCAAAATT  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCATCCCAATACACAGATATTACATTTTTGATTCGTAGCTAGCAAAATT  850

seq1  ACAGTTATGGAGTAGCAACAAAAAATAATTTGTTTTGGGGGGGGAGGAGT  899
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  ACAGTTATGGAGTAGCAAC-AAAAATAATTTG-TTTGGGGGGGGAGGAGT  898

seq1  CACTATAACACGTGGAACTGTGTTTCAGTTGCAGCCTTAGGAAGGTTGAG  949
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  CACTAT-ACACGTGGAACTGTGTTTCAGTTGC-GCCTTAGGAAGGTTGAG  946

seq1  AGCCACTGCACTAACCTCTGAGCTCACAGACCTTCCACTGTGGGCTTTTT  999
      ||||||||||||||| ||||| ||| || || |||||||| |||||||||
seq2  AGCCACTGCACTAACTTCTGA-CTCCCAAACTTTCCACTGGGGGCTTTTT  995

seq1  GGGAGCAGAGAACAGGTCACC  1020
      |||||||||||||||| ||||
seq2  GGGAGCAGAGAACAGGGCACC  1016