BAC Information

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BAC

Clone NameB6Ng01-009H15
Chromosome10 (Build37)
Map Location 11,593,901 - 11,645,326
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm1, Shprh, Fbxo30, Epm2a, EG666732, LOC100039343
Downstream geneUtrn, LOC665172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H15.bB6Ng01-009H15.g
ACCDH845405DH845406
length1,096417
definitionDH845405|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H15, 5' end.DH845406|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,644,220 - 11,645,326)(11,593,901 - 11,594,323)
sequence
gaattctccagaagggtttttgagactggccatgagataaaaatacaaac
gtattagaactaaactcaaaggaaggtcagaacacaggcaggtctaaata
gcaggggatacaggaaacactgtgaatggaaactgatgatgctggagcca
gagtggggtcttctgctgtgtttccatttccctttcagaagaaaagcaat
gaaacagaattagatgaatccatttttatatagcatcatttttcctgaag
ggtcaccaaagagaaaaagagaaaaccaacttataaatgaattatttatt
ccagctagcctgtataaaagacacaaaatcctggtattttatttacaagc
tatcaacctaaattgggcaggttgtgagttattctaacttacatcccagc
catatgttccttgttattttctgtttgagtatcacctgttatttctgctc
catccgtgtgtcctcagggggcatttctccagccgtgtactcctggttca
tttcatcctggtgacttgttcctctcccttcctcctttctccttctctct
ctcttcttgcctcttctctccttctccttctccttttactttcctctcct
catggtcattacttgcaacccccagcccagtaatcgaagttcaattacct
ctattatccccattaattggctgtaatcacttttaaggtttatacatcaa
aggcttgttagtatacacgggaattcagtcacctgagggcaatcaaatat
taggggccagtatttagcctttgagtacatagcagcaccaaaccaacccc
aacatcaccttctttaccctctgctctctagggtggatggatggtagtca
atgttttgcctgagaatatgtttcaggattcagattctggggcattggga
tttgatctgtgggtaagtactgtgaaacatgaggaactgagttcaatccc
agccttccacttggaaatgtcaggtctagagtacttatctgtaatgcatg
cttatgagatgctggatccccatattcctggcaagccagtttagcctaca
ctgctctaaacgtaagatatagatccattgaggaaaacattctgaa
aaaactagccagagttacatgaggtgatgtttcaaaaacagagacaaagt
aacagacattgaagatggtcttatgaacctatgccccagagtaaggaagt
taccacagagtaccgatgcctgcatacctgtgcctagcgtggttcagtta
tggattagcccaggtgcctggcagcagatgagtgggtaaagaaaatagat
gtgtatgtgcaagcaaggaattcttttcagtgaggaagaagaatgaaatt
atgctgtttctgaggaaatgagtggaagcagaggctatcatggtaagcca
aagaaggcagctgcagaagcttttctctcatctgtggaaacaaacgagca
atcaagcaaaacggaataactaacctggacatggacaacagaacatggag
ggggaggaggggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_11644220_11645326
seq2: B6Ng01-009H15.b_48_1143 (reverse)

seq1  TTCAGGATGTTTTCCTCAATTGGATCTATATCTTACGTTTTAGAGCAGTG  50
      ||||| ||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TTCAGAATGTTTTCCTCAA-TGGATCTATATCTTACG-TTTAGAGCAGTG  48

seq1  TTAGGCTAAACTGGCTTGCCAGGGAATATGTGGGATCCAGCATCTCTATA  100
       |||||||||||||||||||| |||||||| ||||||||||||||| |||
seq2  -TAGGCTAAACTGGCTTGCCA-GGAATATG-GGGATCCAGCATCTC-ATA  94

seq1  AGCATGCATTACAGATAAGTACTTCTAGACCTGACATTTTCCAAGTGGAA  150
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  AGCATGCATTACAGATAAGTAC-TCTAGACCTGACA-TTTCCAAGTGGAA  142

seq1  GGCTGGGATTTGAACTCAGTTCCTCATGTTTTCACAGTACTTACCCACAG  200
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  GGCTGGGA-TTGAACTCAGTTCCTCATG-TTTCACAGTACTTACCCACAG  190

seq1  ATCAAATCCCAATGCCCCAGAATCTGAATCCTGAAACATATTTCTCAGGC  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCAAATCCCAATGCCCCAGAATCTGAATCCTGAAACATA-TTCTCAGGC  239

seq1  AAAACATTGACTACCATCCATCCACCCTAGAGAGCAGAGGGTAAAGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTGACTACCATCCATCCACCCTAGAGAGCAGAGGGTAAAGAAGG  289

seq1  TGATGTTGGGGTTGGTTTGGTGCTGCTATGTACTCAAAGGCTAAATACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGGGGTTGGTTTGGTGCTGCTATGTACTCAAAGGCTAAATACTG  339

seq1  GCCCCTAATATTTGATTGCCCTCAGGTGACTGAATTCCCGTGTATACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAATATTTGATTGCCCTCAGGTGACTGAATTCCCGTGTATACTAA  389

seq1  CAAGCCTTTGATGTATAAACCTTAAAAGTGATTACAGCCAATTAATGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTTGATGTATAAACCTTAAAAGTGATTACAGCCAATTAATGGGG  439

seq1  ATAATAGAGGTAATTGAACTTCGATTACTGGGCTGGGGGTTGCAAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGAGGTAATTGAACTTCGATTACTGGGCTGGGGGTTGCAAGTAAT  489

seq1  GACCATGAGGAGAGGAAAGTAAAAGGAGAAGGAGAAGGAGAGAAGAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAGGAGAGGAAAGTAAAAGGAGAAGGAGAAGGAGAGAAGAGGCA  539

seq1  AGAAGAGAGAGAGAAGGAGAAAGGAGGAAGGGAGAGGAACAAGTCACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGAGAGAAGGAGAAAGGAGGAAGGGAGAGGAACAAGTCACCAG  589

seq1  GATGAAATGAACCAGGAGTACACGGCTGGAGAAATGCCCCCTGAGGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATGAACCAGGAGTACACGGCTGGAGAAATGCCCCCTGAGGACAC  639

seq1  ACGGATGGAGCAGAAATAACAGGTGATACTCAAACAGAAAATAACAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATGGAGCAGAAATAACAGGTGATACTCAAACAGAAAATAACAAGGA  689

seq1  ACATATGGCTGGGATGTAAGTTAGAATAACTCACAACCTGCCCAATTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGCTGGGATGTAAGTTAGAATAACTCACAACCTGCCCAATTTAG  739

seq1  GTTGATAGCTTGTAAATAAAATACCAGGATTTTGTGTCTTTTATACAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAGCTTGTAAATAAAATACCAGGATTTTGTGTCTTTTATACAGGC  789

seq1  TAGCTGGAATAAATAATTCATTTATAAGTTGGTTTTCTCTTTTTCTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGAATAAATAATTCATTTATAAGTTGGTTTTCTCTTTTTCTCTTT  839

seq1  GGTGACCCTTCAGGAAAAATGATGCTATATAAAAATGGATTCATCTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCTTCAGGAAAAATGATGCTATATAAAAATGGATTCATCTAATT  889

seq1  CTGTTTCATTGCTTTTCTTCTGAAAGGGAAATGGAAACACAGCAGAAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCATTGCTTTTCTTCTGAAAGGGAAATGGAAACACAGCAGAAGAC  939

seq1  CCCACTCTGGCTCCAGCATCATCAGTTTCCATTCACAGTGTTTCCTGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTGGCTCCAGCATCATCAGTTTCCATTCACAGTGTTTCCTGTAT  989

seq1  CCCCTGCTATTTAGACCTGCCTGTGTTCTGACCTTCCTTTGAGTTTAGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTATTTAGACCTGCCTGTGTTCTGACCTTCCTTTGAGTTTAGTT  1039

seq1  CTAATACGTTTGTATTTTTATCTCATGGCCAGTCTCAAAAACCCTTCTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACGTTTGTATTTTTATCTCATGGCCAGTCTCAAAAACCCTTCTGG  1089

seq1  AGAATTC  1107
      |||||||
seq2  AGAATTC  1096

seq1: chr10_11593901_11594323
seq2: B6Ng01-009H15.g_68_490

seq1  GAATTCAAAACTAGCCAGAGTTACATGAGGTGATGTTTCAAAAACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTAGCCAGAGTTACATGAGGTGATGTTTCAAAAACAGAGA  50

seq1  CAAAGTAACAGACATTGAAGATGGTCTTATGAACCTATGCCCCAGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAACAGACATTGAAGATGGTCTTATGAACCTATGCCCCAGAGTAA  100

seq1  GGAAGTTACCACAGAGTACCGATGCCTGCATACCTGTGCCTAGCGTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTACCACAGAGTACCGATGCCTGCATACCTGTGCCTAGCGTGGTT  150

seq1  CAGTTATGGATTAGCCCAGGTGCCTGGCAGCAGATGAGTGGGTAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGGATTAGCCCAGGTGCCTGGCAGCAGATGAGTGGGTAAAGAAA  200

seq1  ATAGATGTGTATGTGCAAGCAAGGAATTCTTTTCAGTGAGGAAGAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTGTATGTGCAAGCAAGGAATTCTTTTCAGTGAGGAAGAAGAAT  250

seq1  GAAATTATGCTGTTTCTGAGGAAATGAGTGGAAGCAGAGGCTATCATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATGCTGTTTCTGAGGAAATGAGTGGAAGCAGAGGCTATCATGGT  300

seq1  AAGCCAAAGAAGGCAGCTGCAGAAGCTTTTCTCTCATCTGTGGAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAGAAGGCAGCTGCAGAAGCTTTTCTCTCATCTGTGGAAACAAA  350

seq1  CGAGCAATCAAGCAAAACGGAATAACTAACCTGGACATGGACAACAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAATCAAGCAAAACGGAATAACTAACCTGGACATGGACAACAGAAC  400

seq1  ATGGAGGGGGAGGAGGGGAGGGG  423
      |||||||||||||||||||||||
seq2  ATGGAGGGGGAGGAGGGGAGGGG  423