BAC Information

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BAC

Clone NameB6Ng01-009M24
Chromosome10 (Build37)
Map Location 76,592,549 - 76,736,999
singlet/doubletdoublet
Overlap geneCol18a1, LOC665762, Pofut2
Upstream geneSlc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1
Downstream geneAdarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009M24.bB6Ng01-009M24.g
ACCDH845653DH845654
length1,1571,128
definitionDH845653|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M24, 5' end.DH845654|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,592,549 - 76,593,707)(76,735,878 - 76,736,999)
sequence
gaattctgccttcatcaggcaacagctggtggtggaaattcccatggcca
gaatgcgggtgaaggtccttgagaatctgcgccctgggggcccatttctg
tttttgcacagctggaagaaaggctagccttccccccagagtgaggtgcc
acgctgtgcccgggcccatggccaacaatctattctcatttcctaccctg
ccatcagattctttgaaaaatttgagatgactcccaagtccagttgagta
tgtcactgaggtcacagcagcaggggattgggagagacaaaggtccctag
cttctgtcagctctggaccccagcctgatccacttcctcccaatggcagc
tcagaaacccacctgtggcccgccaagccacacctggcagctggcttcct
ggctcttccccagctgtctcaccaggtggcatgtggtcaagtaacacaat
aaattctacccagaatccatggaatgcaattagggaagagcagagatgcc
aaaaaaccaagctgtgcggcaggactggactacccccacccccacccccc
atctcctgcagcctggaagccaggtggcaccccagatcagcttcccacca
actctgggctactgatgacatggggaaagaaacaggtgagtggcccaggt
tctcactcaaacgtttcccagagcctttctctgactttcacccacactgc
agaggatacagattcatgcgggccatgattcactcgacaggatttaaagc
tgagctgccaaggtgagtaactgctgagatcccttcaaagtcgggctctg
gcatcctggagtgtgccagcctccgtgtgtccaccaaggcaggcactcca
gggaaacactctgattctgctaaagcctggacttgtctggcagccaagac
tgtcagacatggtctcagacgaggtgctggccaccagagggagccataga
tccagcttccttagccactagagggagctgtagacccagtttcttagcca
cttgcaagcaagcctcttctaagggagctctttgtgtatgatactgtatc
aagaaagaaattatataacgttaacttctggcgagagaataaacttccca
gcccacaatcggcacatgggacctctgtctcaaccatggccttacttaca
ttctgtg
gaattctctcagaggggatttagttcagtgctagagtgcttgcccagcac
ctgaagagagggggattgcaagcaagtctgtctatctgtctgtctgtctc
tcctctcctcccactcctctcctctctctcttgtccccctgtccagaagt
gaggttaatgcccagagtaccctggccccttcctgtgctccagtcccact
ccacccccactccattcactgtcccccagagtgctgccagcctgccttgg
cacacacaggcactatctcctgccacttttctagggcttgctcagccagg
aacctgtgaggaacctacccagtcactctgggggccactttcttcatagt
ttcagctgtggggagccctctcagtcctcccaacatagtcttgtgtccaa
aatgggtttcaaatggccctgctggggttcccaggtatggaggtcctctg
tggggagccccatctccacagtgagtcactgaaacttccagaccctttga
agttcatttcctcagccttggcctttatctccaccacacctttgtctctc
attacccttcacaaaggcactaaagccacagaactcgtgttcattcatcc
ttgccattccctgaggcaaaggagagtcagagagggtaacagaccccccc
tctcctaccccatcctagacttgccactcccacaggatggattcgtcttt
gtctgaggggcccatggccctgtttggggcttcctctgcaaacccactta
gcctttctcaagagcagacaggttctgaaactggcgggttggaggtgctg
tcacccacagactcctaggggttgcagggctcttcctgtgcttctttttg
atgtgggggagagcccatagcgccatgtgtcctgcaaggtctaaagtctt
gccagcccttttgtgtggcacgaggactgccaaagagaagataagggagc
ctgcttcttcccgccaggctctctcttcagtgccgaggggtgaatttgtc
acaggtcatttattgcagccttcagcctcccaatagttagcttgatgcgg
caccaagaggtatggctgctcatccctggaaacagatggtgcttggcacc
gaccaaggggtgatctgagacaagtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_76592549_76593707
seq2: B6Ng01-009M24.b_46_1202

seq1  GAATTCTGCCTTCATCAGGCAACAGCTGGTGGTGGAAATTCCCATGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTTCATCAGGCAACAGCTGGTGGTGGAAATTCCCATGGCCA  50

seq1  GAATGCGGGTGAAGGTCCTTGAGAATCTGCGCCCTGGGGGCCCATTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCGGGTGAAGGTCCTTGAGAATCTGCGCCCTGGGGGCCCATTTCTG  100

seq1  TTTTTGCACAGCTGGAAGAAAGGCTAGCCTTCCCCCCAGAGTGAGGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCACAGCTGGAAGAAAGGCTAGCCTTCCCCCCAGAGTGAGGTGCC  150

seq1  ACGCTGTGCCCGGGCCCATGGCCAACAATCTATTCTCATTTCCTACCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGTGCCCGGGCCCATGGCCAACAATCTATTCTCATTTCCTACCCTG  200

seq1  CCATCAGATTCTTTGAAAAATTTGAGATGACTCCCAAGTCCAGTTGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGATTCTTTGAAAAATTTGAGATGACTCCCAAGTCCAGTTGAGTA  250

seq1  TGTCACTGAGGTCACAGCAGCAGGGGATTGGGAGAGACAAAGGTCCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGAGGTCACAGCAGCAGGGGATTGGGAGAGACAAAGGTCCCTAG  300

seq1  CTTCTGTCAGCTCTGGACCCCAGCCTGATCCACTTCCTCCCAATGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCAGCTCTGGACCCCAGCCTGATCCACTTCCTCCCAATGGCAGC  350

seq1  TCAGAAACCCACCTGTGGCCCGCCAAGCCACACCTGGCAGCTGGCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACCCACCTGTGGCCCGCCAAGCCACACCTGGCAGCTGGCTTCCT  400

seq1  GGCTCTTCCCCAGCTGTCTCACCAGGTGGCATGTGGTCAAGTAACACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTCCCCAGCTGTCTCACCAGGTGGCATGTGGTCAAGTAACACAAT  450

seq1  AAATTCTACCCAGAATCCATGGAATGCAATTAGGGAAGAGCAGAGATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTACCCAGAATCCATGGAATGCAATTAGGGAAGAGCAGAGATGCC  500

seq1  AAAAAACCAAGCTGTGCGGCAGGACTGGACTACCCCCACCCCCACCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCAAGCTGTGCGGCAGGACTGGACTACCCCCACCCCCACCCCCC  550

seq1  ATCTCCTGCAGCCTGGAAGCCAGGTGGCACCCCAGATCAGCTTCCCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGCAGCCTGGAAGCCAGGTGGCACCCCAGATCAGCTTCCCACCA  600

seq1  ACTCTGGGCTACTGATGACATGGGGAAAGAAACAGGTGAGTGGCCCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGCTACTGATGACATGGGGAAAGAAACAGGTGAGTGGCCCAGGT  650

seq1  TCTCACTCAAACGTTTCCCAGAGCCTTTCTCTGACTTTCACCCACACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCAAACGTTTCCCAGAGCCTTTCTCTGACTTTCACCCACACTGC  700

seq1  AGAGGATACAGATTCATGCGGGCCATGATTCACTCGACAGGATTTAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATACAGATTCATGCGGGCCATGATTCACTCGACAGGATTTAAAGC  750

seq1  TGAGCTGCCAAGGTGAGTAACTGCTGAGATCCCTTCAAAGTCGGGCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCCAAGGTGAGTAACTGCTGAGATCCCTTCAAAGTCGGGCTCTG  800

seq1  GCATCCTGGAGTGTGCCAGCCTCCGTGTGTCCACCAAGGCAGGCACTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGGAGTGTGCCAGCCTCCGTGTGTCCACCAAGGCAGGCACTCCA  850

seq1  GGGAAACACTCTGATTCTGCTAAAGCCTGGACTTGTCTGGCAGCCAAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACACTCTGATTCTGCTAAAGCCTGGACTTGTCTGGCAGCCAAGAC  900

seq1  TGTCAGGACATGGTCTCAGACGAGGTGCTGGCCACCAGAGGGAGCCATAG  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCA-GACATGGTCTCAGACGAGGTGCTGGCCACCAGAGGGAGCCATAG  949

seq1  ATCCAGCTTCCTTAGCCACTAGAGGGAGCCATAGACCCAGTTTCCTTAGC  1000
      |||||||||||||||||||||||||||||  |||||||||||| ||||||
seq2  ATCCAGCTTCCTTAGCCACTAGAGGGAGCTGTAGACCCAGTTT-CTTAGC  998

seq1  CACTTGCAAGCAAG-CTCTTCTAA-GGAGCTCTTTGTGGTATGATACTGT  1048
      |||||||||||||| ||||||||| |||||||||||| ||||||||||||
seq2  CACTTGCAAGCAAGCCTCTTCTAAGGGAGCTCTTTGT-GTATGATACTGT  1047

seq1  ATCAGGAAAGAAATTTATAT-ACAGTAAC-TCTGAGCGAGAGAAT-AACT  1095
      |||| |||||||| |||||| ||  |||| |||| |||||||||| ||||
seq2  ATCAAGAAAGAAA-TTATATAACGTTAACTTCTG-GCGAGAGAATAAACT  1095

seq1  TCTCAGCCCACAATCGGCACATGGCACCTCTGTCCACACCTTTGCTCTTA  1145
      || ||||||||||||||||||||| |||||||||   ||| | || ||||
seq2  TCCCAGCCCACAATCGGCACATGGGACCTCTGTCTCAACCATGGC-CTTA  1144

seq1  CTTACATTCGTGTG  1159
      ||||||||| ||||
seq2  CTTACATTC-TGTG  1157

seq1: chr10_76735878_76736999
seq2: B6Ng01-009M24.g_68_1195 (reverse)

seq1  GGGAC-TGTCTCGAGTCACACCTTGGCTGGTGCC-AGCACCATCTGTCT-  47
      ||||| ||||||   |||| ||||||  |||||| |||||||||||| | 
seq2  GGGACTTGTCTCAGATCACCCCTTGGTCGGTGCCAAGCACCATCTGTTTC  50

seq1  CAGTGATG-GCAGCCATTACCTCTTGCTGCCGCATC-AGCTAACTAATGG  95
      ||| |||| ||||||| ||||||||| ||||||||| ||||||||| |||
seq2  CAGGGATGAGCAGCCA-TACCTCTTGGTGCCGCATCAAGCTAACTATTGG  99

seq1  GAGGCTGGAGGCTGCAGTAAATGGCCTGTGACAAATTCAACCCTCGGCAC  145
      ||||||| |||||||| |||||| ||||||||||||||| ||||||||||
seq2  GAGGCTGAAGGCTGCAATAAATGACCTGTGACAAATTCACCCCTCGGCAC  149

seq1  TGAAGAGAGAGGCCTTGGCGGGAAGAAGCAGGGCTCCCTTATCTTCTCTT  195
      |||||||||||  | ||||||||||||||| |||||||||||||||||||
seq2  TGAAGAGAGAG--CCTGGCGGGAAGAAGCA-GGCTCCCTTATCTTCTCTT  196

seq1  TGGCAGTTCTCGTGCCACAC-AAAGGGCTGGCAAGACTTTAGACC-TGCA  243
      ||||||| |||||||||||| |||||||||||||||||||||||| ||||
seq2  TGGCAGTCCTCGTGCCACACAAAAGGGCTGGCAAGACTTTAGACCTTGCA  246

seq1  GGACACATGGCGCTATGGGCTCT-CCCCACATC-AAAAGAAGCACAGGAA  291
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  GGACACATGGCGCTATGGGCTCTCCCCCACATCAAAAAGAAGCACAGGAA  296

seq1  GAGCCCTGCAACCCCTAGGAGTCTGTGGGTGACAGCACCTCCAACCCGCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGCAACCCCTAGGAGTCTGTGGGTGACAGCACCTCCAACCCGCC  346

seq1  AGTTTCAGAACCTGTCTGCTCTTGAGAAAGGCTAAGTGGGTTTGCAGAGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAACCTGTCTGCTCTTGAGAAAGGCTAAGTGGGTTTGCAGAGG  396

seq1  AAGCCCCAAACAGGGCCATGGG-CCCTCAGACAAAGACGAATCCATCCTG  440
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGCCCCAAACAGGGCCATGGGCCCCTCAGACAAAGACGAATCCATCCTG  446

seq1  TGGGAGTGGCAAGTCTAGGATGGGGTAGGAGAGGGGGGGTCTGTTACCCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGGCAAGTCTAGGATGGGGTAGGAGAGGGGGGGTCTGTTACCCT  496

seq1  CTCTGACTCTCCTTTGCCTCAGGGAATGGCAAGGATGAATGAACACGAGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTCTCCTTTGCCTCAGGGAATGGCAAGGATGAATGAACACGAGT  546

seq1  TCTGTGGCTTTAGTGCCTTTGTGAAGGGTAATGAGAGACAAAGGTGTGGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTTTAGTGCCTTTGTGAAGGGTAATGAGAGACAAAGGTGTGGT  596

seq1  GGAGATAAAGGCCAAGGCTGAGGAAATGAACTTCAAAGGGTCTGGAAGTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAAGGCCAAGGCTGAGGAAATGAACTTCAAAGGGTCTGGAAGTT  646

seq1  TCAGTGACTCACTGTGGAGATGGGGCTCCCCACAGAGGACCTCCATACCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACTCACTGTGGAGATGGGGCTCCCCACAGAGGACCTCCATACCT  696

seq1  GGGAACCCCAGCAGGGCCATTTGAAACCCATTTTGGACACAAGACTATGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCCAGCAGGGCCATTTGAAACCCATTTTGGACACAAGACTATGT  746

seq1  TGGGAGGACTGAGAGGGCTCCCCACAGCTGAAACTATGAAGAAAGTGGCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGACTGAGAGGGCTCCCCACAGCTGAAACTATGAAGAAAGTGGCC  796

seq1  CCCAGAGTGACTGGGTAGGTTCCTCACAGGTTCCTGGCTGAGCAAGCCCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTGACTGGGTAGGTTCCTCACAGGTTCCTGGCTGAGCAAGCCCT  846

seq1  AGAAAAGTGGCAGGAGATAGTGCCTGTGTGTGCCAAGGCAGGCTGGCAGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTGGCAGGAGATAGTGCCTGTGTGTGCCAAGGCAGGCTGGCAGC  896

seq1  ACTCTGGGGGACAGTGAATGGAGTGGGGGTGGAGTGGGACTGGAGCACAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGGGACAGTGAATGGAGTGGGGGTGGAGTGGGACTGGAGCACAG  946

seq1  GAAGGGGCCAGGGTACTCTGGGCATTAACCTCACTTCTGGACAGGGGGAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCCAGGGTACTCTGGGCATTAACCTCACTTCTGGACAGGGGGAC  996

seq1  AAGAGAGAGAGGAGAGGAGTGGGAGGAGAGGAGAGACAGACAGACAGATA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAGGAGAGGAGTGGGAGGAGAGGAGAGACAGACAGACAGATA  1046

seq1  GACAGACTTGCTTGCAATCCCCCTCTCTTCAGGTGCTGGGCAAGCACTCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTTGCTTGCAATCCCCCTCTCTTCAGGTGCTGGGCAAGCACTCT  1096

seq1  AGCACTGAACTAAATCCCCTCTGAGAGAATTC  1122
      ||||||||||||||||||||||||||||||||
seq2  AGCACTGAACTAAATCCCCTCTGAGAGAATTC  1128