BAC Information

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BAC

Clone NameB6Ng01-011B02
Chromosome10 (Build37)
Map Location 127,371,118 - 127,514,468
singlet/doubletdoublet
Overlap geneLOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3
Upstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro
Downstream geneAtp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011B02.bB6Ng01-011B02.g
ACCDH846556DH846557
length1,0651,150
definitionDH846556|Mus musculus domesticus DNA, BAC clone: B6Ng01-011B02, 5' end.DH846557|Mus musculus domesticus DNA, BAC clone: B6Ng01-011B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,371,118 - 127,372,197)(127,513,318 - 127,514,468)
sequence
gaattctgggaacgccaagatctgaactctgatcataatgtttgtgtggc
aagtgctctaaccactgagccatctctccagttcattatttatacgctta
ttcctgtgtacatatgtgagcgtatctacaccatggcaagcctgtggagg
tcagaggacactccctggaatcatatttcttcttaagttccttttctgat
aagccgtctcacccgccctgtttggtttttttttgtttaagacagggtca
taagcaatccaggtccagctggtactcaggatgttttggcatttttaact
gtagttctagcttttttaatttagcatatttctggttatttgtcctagtt
ggctttttttcttttctttttttcttttcttttgtaaagaatcatttatt
tattttatgtatatgaatacactatagctgtcttcagacacaccagaaga
gggcatctgagcccattacgatggttgcgagccaccatgtggttgctggg
aattgaactcaggacctctggaagagcagtcgatgctcctaactgctgag
ccatctctcaagccccccactcccctgttgacgttctgtaagaaaaaaaa
aaaaaaacacccagagaggaaagggtttatctcatcttattccttacagt
aggtcatgaagggaggtcaggacaagaactcaaggtagaaacctgaagca
agaggccatggaggaacacattttattggcttgctactcaagcttgcttg
atcagcgtgttttattatacagccagggaggactgactgtccgggagggg
gaccacccgcagtggctctcccactttcaatcattaatcaagtaaatacc
ccccaacacacagacttgcctacaggccaatcctgcggggacattttctc
aagcgaggttacctcttctcaactgttgtcttacttgtgtcagctgacca
aaaacaacaaataacaaaagaaacaactaacacagtcttgaatcaggctt
ggggtcaccctttgtccaagatgaaagaaatgaaaatagcatttaagctg
ggctggtggcgcacg
gaattcaggtaatatctccttaaaatgatgagtgtggggtgttcgttatc
actattagctttagagcactggaacatacttttacgtcagtcagtggttc
tcaatctggatcaaagcagtaaacaaggtgacactgctaattcaggagtg
aaaatgtacaggaggacaacacattcacttttatttcagtcaagtcacaa
cacttgtctggctgctgccaagtgcccacagcttcccatttacagacaca
ctttacagggtttcctgtgacagtacagcaagcctctttgttcaaacagg
accagtccaaattttccctcaaaaaaacaaaacaaaaaaaaaaaaaaaac
caaactccattccagtaaggggtaaatacatgaaattacagcaaacagac
acttaaaaggacagccaagaaatcttccaacagtttattagaaagaatgt
agacatttaaaaaaatccccactgtcatgaacataaattgaggttttcca
gccagggcataagctgaaatcaaaacagaaaataaaaaaaatccaatagt
gtatttaacattgtccactcatttgccatactgactgtgcaaatacaaat
ctggtctaaaatgtacatactctcaagcaacaatgtacagctttctttgt
cctccatgctaagagatgtaaaagcttaagggccaaacaataccaagtgt
ataggcttcaaaaaccatctaagttaggggcatccactagtttttgctaa
aatacacctgaacactgacaagtgatcacatacaatgatgtaaagtacat
ttttttttttttgaaaaataaacttttagtggaataattttgaaaggtat
cctgaaagaatggcaggttatcagtttaaggtattagccaatttgttttc
gcctcctttaaattccatggtctaggatctaaaactttcatcttttccct
aagctgagagctttcctaaatgtgtaagtaattgtgttatgatgaaagac
ttagatgaaatgcatatttgtccgagctgctgagcagtggctaagaatca
ctgcctcaatggaatcattggtaattgttcatgcaagatacctgcttagc
ctgactaatcctcccacaatggtacataatccaaccttaagtgaatcctt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127371118_127372197
seq2: B6Ng01-011B02.b_49_1113

seq1  GAATTCTGGGAACGCCAAGATCTGAACTCTGATCATAATGTTTGTGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAACGCCAAGATCTGAACTCTGATCATAATGTTTGTGTGGC  50

seq1  AAGTGCTCTAACCACTGAGCCATCTCTCCAGTTCATTATTTATACGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTCTAACCACTGAGCCATCTCTCCAGTTCATTATTTATACGCTTA  100

seq1  TTCCTGTGTACATATGTGAGCGTATCTACACCATGGCAAGCCTGTGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGTACATATGTGAGCGTATCTACACCATGGCAAGCCTGTGGAGG  150

seq1  TCAGAGGACACTCCCTGGAATCATATTTCTTCTTAAGTTCCTTTTCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGACACTCCCTGGAATCATATTTCTTCTTAAGTTCCTTTTCTGAT  200

seq1  AAGCCGTCTCACCCGCCCTGTTTGGTTTTTTTTTGTTTAAGACAGGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGTCTCACCCGCCCTGTTTGGTTTTTTTTTGTTTAAGACAGGGTCA  250

seq1  TAAGCAATCCAGGTCCAGCTGGTACTCAGGATGTTTTGGCATTTTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATCCAGGTCCAGCTGGTACTCAGGATGTTTTGGCATTTTTAACT  300

seq1  GTAGTTCTAGCTTTTTTAATTTAGCATATTTCTGGTTATTTGTCCTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCTAGCTTTTTTAATTTAGCATATTTCTGGTTATTTGTCCTAGTT  350

seq1  GGCTTTTTTTCTTTTCTTTTTTTCTTTTCTTTTGTAAAGAATCATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTTTCTTTTCTTTTTTTCTTTTCTTTTGTAAAGAATCATTTATT  400

seq1  TATTTTATGTATATGAATACACTATAGCTGTCTTCAGACACACCAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGTATATGAATACACTATAGCTGTCTTCAGACACACCAGAAGA  450

seq1  GGGCATCTGAGCCCATTACGATGGTTGCGAGCCACCATGTGGTTGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTGAGCCCATTACGATGGTTGCGAGCCACCATGTGGTTGCTGGG  500

seq1  AATTGAACTCAGGACCTCTGGAAGAGCAGTCGATGCTCCTAACTGCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTCAGGACCTCTGGAAGAGCAGTCGATGCTCCTAACTGCTGAG  550

seq1  CCATCTCTCAAGCCCCCCACTCCCCTGTTGACGTTCTGTAAGAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCAAGCCCCCCACTCCCCTGTTGACGTTCTGTAAGAAAAAAAA  600

seq1  AAAAAAACACCCAGAGAGGAAAGGGTTTATCTCATCTTATTCCTTACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACACCCAGAGAGGAAAGGGTTTATCTCATCTTATTCCTTACAGT  650

seq1  AGGTCATGAAGGGAGGTCAGGACAAGAACTCAAGGTAGAAACCTGAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGAAGGGAGGTCAGGACAAGAACTCAAGGTAGAAACCTGAAGCA  700

seq1  AGAGGCCATGGAGGAACACATTTTATTGGCTTGCTACTCAAGCTTGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCATGGAGGAACACATTTTATTGGCTTGCTACTCAAGCTTGCTTG  750

seq1  ATCAGCGTGTTTTATTATACAGCCAGGGAGGACTGACTGTCCGGGAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCGTGTTTTATTATACAGCCAGGGAGGACTGACTGTCCGGGAGGGG  800

seq1  GACCACCCGCAGTGGCTCTCCCAC-TTCAATCATTAATCAAGTAAATACC  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GACCACCCGCAGTGGCTCTCCCACTTTCAATCATTAATCAAGTAAATACC  850

seq1  CCCCAACACACAGACTTGCCTACAGGCCAATCCTGCGGGGACATTTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACACACAGACTTGCCTACAGGCCAATCCTGCGGGGACATTTTCTC  900

seq1  AAGCGAGGTTACCTCTTCTCAACTGTTGTCTAACTTGTGTCAAGCTGACC  949
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  AAGCGAGGTTACCTCTTCTCAACTGTTGTCTTACTTGTGTC-AGCTGACC  949

seq1  AAAAAAACAAACAAATAAACAAAAAGAAAACAAACTAACACAGTCTTGAT  999
      |||||    |||||||||   ||||||||   ||||||||||||||||| 
seq2  AAAAA---CAACAAATAA--CAAAAGAAA--CAACTAACACAGTCTTGA-  991

seq1  ACCAGGCTTGGGGTCACCCTTTTGTTCACAAAGATGAAAGAAATGAAAAA  1049
      | ||||||||||||||||| |||||   | |||||||||||||||  |||
seq2  ATCAGGCTTGGGGTCACCC-TTTGT---CCAAGATGAAAGAAATG--AAA  1035

seq1  ATAGCATTTAAGCTGGGCGTGGTGGCGCACG  1080
      |||||||||||||||||| ||||||||||||
seq2  ATAGCATTTAAGCTGGGC-TGGTGGCGCACG  1065

seq1: chr10_127513318_127514468
seq2: B6Ng01-011B02.g_65_1214 (reverse)

seq1  AAGGCTTCAC-TAAGGGTTGATTATGTACCATTGTGTGGGGCGATTTAAG  49
      |||| ||||| ||||| | |||||||||||||  ||||||  ||||  ||
seq2  AAGGATTCACTTAAGGTTGGATTATGTACCAT--TGTGGGAGGATT--AG  46

seq1  TCA-GCTAAGGCAGTATCCTTATGCATGAAC-ATTTCCCATGATTCCA-T  96
      ||| ||||||   |||||    ||||||||| ||| || ||||||||| |
seq2  TCAGGCTAAGCAGGTATC---TTGCATGAACAATTACCAATGATTCCATT  93

seq1  GAGGCAGTTGATCCTAGGCAACTGCTCCAGCAGCTCGGACAAATAATTGC  146
      ||||||| |||| ||  || |||||| ||||||||||||||||||  |||
seq2  GAGGCAG-TGATTCTTAGCCACTGCT-CAGCAGCTCGGACAAATA--TGC  139

seq1  ATTTCATCTAAGTCTTTCATCATAACACAATTACTTACACA-TTAGGAAA  195
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTTCATCTAAGTCTTTCATCATAACACAATTACTTACACATTTAGGAAA  189

seq1  GCTCTCAGCTTAGGG-AAAGATGAAAGTTTTAGATCCTAGACCATGG-AT  243
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  GCTCTCAGCTTAGGGAAAAGATGAAAGTTTTAGATCCTAGACCATGGAAT  239

seq1  TTAAAGGAGGCGGAAACAAATTGGCTAATACCTTAAACTGATAACCTGCC  293
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAGGCGAAAACAAATTGGCTAATACCTTAAACTGATAACCTGCC  289

seq1  ATTCTTTCAGGATACCTTTCAAAATTATTCCACT-AAAGTTTATTTTTC-  341
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  ATTCTTTCAGGATACCTTTCAAAATTATTCCACTAAAAGTTTATTTTTCA  339

seq1  AAAAAAAAAAAATGTACTTTACATCATTGTATGTGATCACTTGTCAGTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAATGTACTTTACATCATTGTATGTGATCACTTGTCAGTGT  389

seq1  TCAGGTGTATTTTAGCAAAAACTAGTGGATG-CCCTAACTTAGATGGTTT  440
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAGGTGTATTTTAGCAAAAACTAGTGGATGCCCCTAACTTAGATGGTTT  439

seq1  TTGAAGCCTATACACTTGGTATTGTTTGGCCCTTAAGCTTTTACATCTCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCTATACACTTGGTATTGTTTGGCCCTTAAGCTTTTACATCTCT  489

seq1  TAGCATGGAGGACAAAGAAAGCTGTACATTGTTGCTTGAGAGTATGTACA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGGAGGACAAAGAAAGCTGTACATTGTTGCTTGAGAGTATGTACA  539

seq1  TTTTAGACCAGATTTGTATTTGCACAGTCAGTATGGCAAATGAGTGGACA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACCAGATTTGTATTTGCACAGTCAGTATGGCAAATGAGTGGACA  589

seq1  ATGTTAAATACACTATTGGATTTTTTTTATTTTCTGTTTTGATTTCAGCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAATACACTATTGGATTTTTTTTATTTTCTGTTTTGATTTCAGCT  639

seq1  TATGCCCTGGCTGGAAAACCTCAATTTATGTTCATGACAGTGGGGATTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTGGCTGGAAAACCTCAATTTATGTTCATGACAGTGGGGATTTT  689

seq1  TTTAAATGTCTACATTCTTTCTAATAAACTGTTGGAAGATTTCTTGGCTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTCTACATTCTTTCTAATAAACTGTTGGAAGATTTCTTGGCTG  739

seq1  TCCTTTTAAGTGTCTGTTTGCTGTAATTTCATGTATTTACCCCTTACTGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAAGTGTCTGTTTGCTGTAATTTCATGTATTTACCCCTTACTGG  789

seq1  AATGGAGTTTGGTTTTTTTTTTTTTTTTGTTTTGTTTTTTTGAGGGAAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTTTGGTTTTTTTTTTTTTTTTGTTTTGTTTTTTTGAGGGAAAA  839

seq1  TTTGGACTGGTCCTGTTTGAACAAAGAGGCTTGCTGTACTGTCACAGGAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACTGGTCCTGTTTGAACAAAGAGGCTTGCTGTACTGTCACAGGAA  889

seq1  ACCCTGTAAAGTGTGTCTGTAAATGGGAAGCTGTGGGCACTTGGCAGCAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTAAAGTGTGTCTGTAAATGGGAAGCTGTGGGCACTTGGCAGCAG  939

seq1  CCAGACAAGTGTTGTGACTTGACTGAAATAAAAGTGAATGTGTTGTCCTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAAGTGTTGTGACTTGACTGAAATAAAAGTGAATGTGTTGTCCTC  989

seq1  CTGTACATTTTCACTCCTGAATTAGCAGTGTCACCTTGTTTACTGCTTTG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATTTTCACTCCTGAATTAGCAGTGTCACCTTGTTTACTGCTTTG  1039

seq1  ATCCAGATTGAGAACCACTGACTGACGTAAAAGTATGTTCCAGTGCTCTA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATTGAGAACCACTGACTGACGTAAAAGTATGTTCCAGTGCTCTA  1089

seq1  AAGCTAATAGTGATAACGAACACCCCACACTCATCATTTTAAGGAGATAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATAGTGATAACGAACACCCCACACTCATCATTTTAAGGAGATAT  1139

seq1  TACCTGAATTC  1151
      |||||||||||
seq2  TACCTGAATTC  1150