BAC Information

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BAC

Clone NameB6Ng01-012B01
Chromosome10 (Build37)X (Build37)
Map Location 104,053,903 - 104,054,36395,626,846 - 95,627,746
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012B01.bB6Ng01-012B01.g
ACCDH847258DH847259
length5331,071
definitionDH847258|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B01, 5' end.DH847259|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(95,626,846 - 95,627,746)
sequence
gaattctcacttgaagaatactgaatggctgagaagcacctgaaaaaaat
gttcaatatccttaattatcagggaaacacaaatcaaaacaaccctgaga
ttccacctcacaccaatcagaatagctaagttcaaaaattcaggtgacag
cagatgctggtgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggctgttcctc
agaaaattggacatagtactaccagagaatactgcaatacctgtcctggg
catatatccagatgatgttccaactggtaagaaggacacatgctccacta
tgttcataggagccttatttataatagccagaagctagaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaataatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtg
gaattccttccagtatcctctgcacagtgatttagtgggcttagtggtca
caaacccttttgcctgcatatattttggaaagtttttttccattcctcaa
ccctgacagattgttgaatatattagtctgggtcgacagctgtagtcttt
cagaacttgaaatacataagttgaagtccttgattttcaagtttctgctg
agcagttgtctattattctgctggcctgatttcatatataattcgatgtt
tctctctagcagttttgcacactttttgttttgcatatttagtgttttaa
ctatgatatgatataatatgacatgacatgacatgacatgacatgacatg
acatgaagaaacatgaagtggaaacttaagggttctttggaaagacagtt
gttttggatagtgttttgctggggcaaacaagtgaaggagtgttttccta
aagtggacacagatgaaaggctaaggcagaataatgaagggatgcttcat
tgaagtaaacaacaggagaaaggatgttatactaaaacaagcacgtaaaa
ggacacgtgatgtgggtttctttgtattggtcggctttacattgtgtggc
tgagctccatttgtcaggactccatagagagaaaaggcaccaaaaaatct
tctggtggtgtgctgcagtttcttttttactttttttttcctttccaatt
ttttattaggcattttcttcatttacatttcaaatgctatccagaaagtc
ccctataccctctccaccatgctcccctacccacccactcctacttcttg
gccctggtgttcccctgtactggggcatataaagtttgcaagaccaaggg
gtgtctatcccaatgatggccgacttggccatcttctgctatatatgcag
ctagagacatgagctctggggtactggttagttcatattgttgttccacc
tatagtgatacagacccattcagctcctgggtactttctctagctccttc
aatggggccttgtgatcatccatagctgactatgagcatccattctggaa
ttgccaggcaccagcatcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-012B01.b_40_511 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||||||||||||| |||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCTAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||| ||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTCCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  |||| ||||||||||||||||| | ||||||||| | || ||| |
seq2  TGGAACATCATCTGGATATATGCCCAGGACAGGTATTGCAGTATTCTCTG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||| ||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACAGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| ||||||||||||||||||||||||||||| |||||| |
seq2  TCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGAACTTAGCTA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||| ||||||||||||||||||||||||||||||||||||  |||||
seq2  TTCTGATTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGTGTTTCC  400

seq1  CTGATGATTAAGGATGTTGAACA-TTTTTTCAGGTGCTTCTCTGCCATTC  439
      ||||| ||||||||| ||||||| |||||||||||||||||| |||||||
seq2  CTGATAATTAAGGATATTGAACATTTTTTTCAGGTGCTTCTCAGCCATTC  450

seq1  GGTATTCCTCAGGTGAGAATTC  461
       |||||| ||| ||||||||||
seq2  AGTATTCTTCAAGTGAGAATTC  472

seq1: chrX_95626846_95627746
seq2: B6Ng01-012B01.g_237_1132

seq1  GTCCTTGATTTTCAAGTTTCTGCTGAGCAGTTGTCTATTATTCTGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGATTTTCAAGTTTCTGCTGAGCAGTTGTCTATTATTCTGCTGGC  50

seq1  CTGATTTCATATATAATTCGATGTTTCTCTCTAGCAGTTTTGCACACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCATATATAATTCGATGTTTCTCTCTAGCAGTTTTGCACACTTT  100

seq1  TTGTTTTGCATATTTAGTGTTTTAACTATGATATGATATAATATGACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCATATTTAGTGTTTTAACTATGATATGATATAATATGACATG  150

seq1  ACATGACATGACATGACATGACATGACATGAAGAAACATGAAGTGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACATGACATGACATGACATGACATGAAGAAACATGAAGTGGAAAC  200

seq1  TTAAGGGTTCTTTGGAAAGACAGTTGTTTTGGATAGTGTTTTGCTGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTTCTTTGGAAAGACAGTTGTTTTGGATAGTGTTTTGCTGGGGC  250

seq1  AAACAAGTGAAGGAGTGTTTTCCTAAAGTGGACACAGATGAAAGGCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTGAAGGAGTGTTTTCCTAAAGTGGACACAGATGAAAGGCTAAG  300

seq1  GCAGAATAATGAAGGGATGCTTCATTGAAGTAAACAACAGGAGAAAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATAATGAAGGGATGCTTCATTGAAGTAAACAACAGGAGAAAGGAT  350

seq1  GTTATACTAAAACAAGCACGTAAAAGGACACGTGATGTGGGTTTCTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACTAAAACAAGCACGTAAAAGGACACGTGATGTGGGTTTCTTTGT  400

seq1  ATTGGTCGGCTTTACATTGTGTGGCTGAGCTCCATTTGTCAGGACTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCGGCTTTACATTGTGTGGCTGAGCTCCATTTGTCAGGACTCCAT  450

seq1  AGAGAGAAAAGGCACCAAAAAATCTTCTGGTGGTGTGCTGCAGTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAAGGCACCAAAAAATCTTCTGGTGGTGTGCTGCAGTTTCTTT  500

seq1  TTTACTTTTTTTTTCCTTTCCAATTTTTTATTAGGCATTTTCTTCATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTTTTTCCTTTCCAATTTTTTATTAGGCATTTTCTTCATTTA  550

seq1  CATTTCAAATGCTATCCAGAAAGTCCCCTATACCCTCTCCACCATGCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAATGCTATCCAGAAAGTCCCCTATACCCTCTCCACCATGCTCC  600

seq1  CCTACCCACCCACTCCTACTTCTTGGCCCTGGTGTTCCCCTGTACTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCACCCACTCCTACTTCTTGGCCCTGGTGTTCCCCTGTACTGGGG  650

seq1  CATATAAAGTTTGCAAGACCAAGGGGTGTCTATCCCAATGATGGCCGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAGTTTGCAAGACCAAGGGGTGTCTATCCCAATGATGGCCGACT  700

seq1  TGGCCATCTTCTGCTATATATGCAGCTAGAGACATGAGCTCTGGGGGTAC  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGCCATCTTCTGCTATATATGCAGCTAGAGACATGAGCTCT-GGGGTAC  749

seq1  TGGTTAGTTCATATTGTTGTTCCACCTATAGTGATACAGACCCATTCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGTTCATATTGTTGTTCCACCTATAGTGATACAGACCCATTCAGC  799

seq1  TCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCTGTGATCCATCCA  850
      ||| ||||||||||||||||||||| || ||||| | |||||| ||||| 
seq2  TCC-TGGGTACTTTCTCTAGCTCCTTCAATGGGGCCTTGTGAT-CATCC-  846

seq1  ATAGCTGACTATGAGCATCCACTTCTGTATTTGCCAGGCACCAGCATCAC  900
      ||||||||||||||||||||| ||||| | ||||||||||||||||||||
seq2  ATAGCTGACTATGAGCATCCA-TTCTGGAATTGCCAGGCACCAGCATCAC  895

seq1  C  901
      |
seq2  C  896