BAC Information

Click to search

BAC

Clone NameB6Ng01-012B03
Chromosome7 (Build37)10 (Build37)
Map Location 49,852,891 - 49,853,42771,403,466 - 71,404,390
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776
Downstream geneC330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012B03.bB6Ng01-012B03.g
ACCDH847262DH847263
length7121,004
definitionDH847262|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B03, 5' end.DH847263|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,852,891 - 49,853,427)(71,403,466 - 71,404,390)
sequence
gaattctctgtttagctctattccccatttttttaatagaatagaatgca
atctaacttggggggggggttgagacaggatttctctgtatcattcatac
caagagtttcttctataggaagaagtcatttgccgttgatctgggtaaaa
gttgtgctcagcgggtaacagcagtgattgttctaccaaaggttctgagt
tcaaatcccaccaaccatgacgtggctcccaaccatctgcgatgggatct
gacacccacttctggttctgtctgaagatagctacaatgtacttaattat
aataataaataaatcctaaaaaaaaagcttaaaaagaaatgaaagtttat
atatgggatggtgagattcctcattggttaagagcactgactgctctttc
aaaagtactgagttcaagtcccagcaaccacatggcggctcataactgcc
tgtaatgagattggatcccctcttctggtgtgtatgaaggcagctatagt
gtaccctggactagtaatacctaaatcgactacaaatttttcaacttcaa
ataagggaagaaagacattgtcttctgtccctatatataaaattataaat
aaatctgatccatttttcctgaccataacactactgccaaaattggctta
cgggggagatagtctggaacacgttcgcgctaccggccagagaacaccat
gcctgacctcaa
gaattctacttgcaagcaggtgtagggagctgtgagggagaccacaagca
gtccatagtgacagggggttgggggggggggttccatagtattttgccca
cttttgcttgaccatagactttatgacaaaagagagttacctatacactt
ttgctgaggctgtacgtttcttagtaacccagcagaccagtgatattttt
tttaatagacaatgctatctgtcctgctaaattaatgttcttaatgtgga
ttatatgattatagttagtttgtcagttaatttttgtttttatattgtaa
gactgttttatatcctactgaaagtttaacttcaaaaatgatacaaaaat
gaaacccaagacatgatgcttacccataccagtagcccacaaaatgccaa
gacagaaacctagaaaatggttgggtaggagtgaattctaaatctacata
attacaaccttcagtttatactgtaaatctttagatatgttctgagacag
gaataagccacaatctttaaaaaaatataagtataacattatgcaggaaa
atttcagtttcctaatgcaataaacacacacacacacacacacacacaca
cacacacaaacacacacaccagtagcaacagtatattcaatagtgttcca
gttccaacattatttgactttttgatatttgtttgccatttttggtaatt
tgtgtgttcaaagaagtatattgctatgatcaaatttacatataatactg
ttccccttttatgcatacagctcaatgacttttgaaaggtatctgtagca
tggtaattactggcaaagatgcagaactgtcttcatctgcaatatgttcc
tgttatttcccacttgggttcctcaactagctaacacagggcctttgcta
aaagtgtagacaacaatgacttgaagtcacaaatgctggtagagataaat
tcagtttaactggttcttagcaacgtattccattcttcataatttatatt
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49852891_49853427
seq2: B6Ng01-012B03.b_131_753

seq1  ATCATTCATACCAAGAGTCTCTTCTATAGGAAGAAGTCATTTGCTGTTGA  50
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  ATCATTCATACCAAGAGTTTCTTCTATAGGAAGAAGTCATTTGCCGTTGA  50

seq1  TCTGGGTAGAAGTTGTGCTCAGTGGGTAAGAGCACTGACAGTTCTACTGA  100
      |||||||| ||||||||||||| |||||| |||| |||  |||||||  |
seq2  TCTGGGTAAAAGTTGTGCTCAGCGGGTAACAGCAGTGATTGTTCTACCAA  100

seq1  AGTTTCTGAGTTCACATCCCAGCAACCATAAGGTGGCTCGCAAGCATCTG  150
      || ||||||||||| |||||| ||||||| | ||||||| ||| ||||||
seq2  AGGTTCTGAGTTCAAATCCCACCAACCATGACGTGGCTCCCAACCATCTG  150

seq1  TAATGGGATCTGACACCCTCTTCTGGTTCTGTCTGAAGATAGATACAGTG  200
        |||||||||||||||| ||||||||||||||||||||||| |||| ||
seq2  CGATGGGATCTGACACCCACTTCTGGTTCTGTCTGAAGATAGCTACAATG  200

seq1  TACTTAGTTATAATAATAAATAAATCCTAAAAAAAAAACTTTTAAA-AAA  249
      |||||| |||||||||||||||||||||||||||||| |||  ||| |||
seq2  TACTTAATTATAATAATAAATAAATCCTAAAAAAAAAGCTTAAAAAGAAA  250

seq1  AGAAAGTTTATATATGGGCTGGTGAGATTCCTCAGTGGTTAAGAGCATTG  299
       ||||||||||||||||| ||||||||||||||| |||||||||||| ||
seq2  TGAAAGTTTATATATGGGATGGTGAGATTCCTCATTGGTTAAGAGCACTG  300

seq1  ACTGCTCTTCCAAACGTACTGAGTTCAAATCCCAGCAACCACATGGTGGC  349
      ||||||||| |||| ||||||||||||| ||||||||||||||||| |||
seq2  ACTGCTCTTTCAAAAGTACTGAGTTCAAGTCCCAGCAACCACATGGCGGC  350

seq1  TCATAACTACTTGTAATGAGATCAGACACCCTCTTCTGGTGTGTATGAAG  399
      |||||||| | |||||||||||  ||  ||||||||||||||||||||||
seq2  TCATAACTGCCTGTAATGAGATTGGATCCCCTCTTCTGGTGTGTATGAAG  400

seq1  ACAGCTATAGTGTACCTATTTATAATAATAAATAAATCTTTAAAAAAATT  449
       |||||||||||||||      || |||||  ||||||    | ||| ||
seq2  GCAGCTATAGTGTACCCTGGACTAGTAATACCTAAATCGACTACAAATTT  450

seq1  T---------AAAAA--GAAAAAAGAAAATTGTCTTCTG-----------  477
      |         || ||  ||| |||| | |||||||||||           
seq2  TTCAACTTCAAATAAGGGAAGAAAG-ACATTGTCTTCTGTCCCTATATAT  499

seq1  ---------------------------------------------CAGCC  482
                                                   | |||
seq2  AAAATTATAAATAAATCTGATCCATTTTTCCTGACCATAACACTACTGCC  549

seq1  A------GC--AAGGTGGAGCATA----GGA--------GGCCTCAAAAC  512
      |      ||  | || |||| |||    |||        |  ||     |
seq2  AAAATTGGCTTACGGGGGAG-ATAGTCTGGAACACGTTCGCGCTACCGGC  598

seq1  CCGAGAACACCATGCCTGACCTCAA  537
      | |||||||||||||||||||||||
seq2  CAGAGAACACCATGCCTGACCTCAA  623

seq1: chr10_71403466_71404390
seq2: B6Ng01-012B03.g_149_1071

seq1  TTCCATAGTATTTTGCCCACTTTTGCTTGACCATAGACTTTATGACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAGTATTTTGCCCACTTTTGCTTGACCATAGACTTTATGACAAAA  50

seq1  GAGAGTTACCTATACACTTTTGCTGAGGCTGTACGTTTCTTAGTAACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTACCTATACACTTTTGCTGAGGCTGTACGTTTCTTAGTAACCCA  100

seq1  GCAGACCAGTGATATTTTTTTTAATAGACAATGCTATCTGTCCTGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCAGTGATATTTTTTTTAATAGACAATGCTATCTGTCCTGCTAAA  150

seq1  TTAATGTTCTTAATGTGGATTATATGATTATAGTTAGTTTGTCAGTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTCTTAATGTGGATTATATGATTATAGTTAGTTTGTCAGTTAAT  200

seq1  TTTTGTTTTTATATTGTAAGACTGTTTTATATCCTACTGAAAGTTTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTATATTGTAAGACTGTTTTATATCCTACTGAAAGTTTAACT  250

seq1  TCAAAAATGATACAAAAATGAAACCCAAGACATGATGCTTACCCATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATGATACAAAAATGAAACCCAAGACATGATGCTTACCCATACCA  300

seq1  GTAGCCCACAAAATGCCAAGACAGAAACCTAGAAAATGGTTGGGTAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCACAAAATGCCAAGACAGAAACCTAGAAAATGGTTGGGTAGGAG  350

seq1  TGAATTCTAAATCTACATAATTACAACCTTCAGTTTATACTGTAAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTAAATCTACATAATTACAACCTTCAGTTTATACTGTAAATCTT  400

seq1  TAGATATGTTCTGAGACAGGAATAAGCCACAATCTTTAAAAAAATATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGTTCTGAGACAGGAATAAGCCACAATCTTTAAAAAAATATAAG  450

seq1  TATAACATTATGCAGGAAAATTTCAGTTTCCTAATGCAATAAACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATTATGCAGGAAAATTTCAGTTTCCTAATGCAATAAACACACAC  500

seq1  ACACACACACACACACACACACACACAAACACACACACCAGTAGCAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACAAACACACACACCAGTAGCAACAG  550

seq1  TATATTCAATAGTGTTCCAGTTCCAACATTATTTGACTTTTTGATATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAATAGTGTTCCAGTTCCAACATTATTTGACTTTTTGATATTTG  600

seq1  TTTGCCA-TTTTGGTAATTTGTGTGTTCAAAGAAGTATATTGCTATGATC  649
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTTTTGGTAATTTGTGTGTTCAAAGAAGTATATTGCTATGATC  650

seq1  AAATTTACATATAATACTGTTCCCCTTTTATGCATACAGCTCAATGACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACATATAATACTGTTCCCCTTTTATGCATACAGCTCAATGACTT  700

seq1  TTGAAAGGTATCTGTAGCATGGTAATTACTGGCAAAGATGCAGAACTGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGTATCTGTAGCATGGTAATTACTGGCAAAGATGCAGAACTGTC  750

seq1  TTCATCTGCAATATGTTCCTGTTATTTCCCACTT-GGTTCCTCAGCTAGC  798
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TTCATCTGCAATATGTTCCTGTTATTTCCCACTTGGGTTCCTCAACTAGC  800

seq1  TAACACAGGGCCTTTGCTAAAAGTGTAGACAAC-ATGACTTGAAGTCACA  847
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAACACAGGGCCTTTGCTAAAAGTGTAGACAACAATGACTTGAAGTCACA  850

seq1  AATGCTGTTAGAGATAAATTCAGGTTTAAACTGTTCTTAGCAACGTATTT  897
      ||||||| |||||||||||||| ||||||   ||||||||||||||||| 
seq2  AATGCTGGTAGAGATAAATTCA-GTTTAACTGGTTCTTAGCAACGTATTC  899

seq1  CATTTTTTCAATAATTTATTTATTTTTT  925
      |||| ||   ||||||||  ||||||||
seq2  CATTCTT--CATAATTTA--TATTTTTT  923