BAC Information

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BAC

Clone NameB6Ng01-012H16
Chromosome10 (Build37)
Map Location 100,097,965 - 100,207,841
singlet/doubletdoublet
Overlap genenone
Upstream geneCsl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012H16.bB6Ng01-012H16.g
ACCDH847563DH847564
length1,0101,118
definitionDH847563|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H16, 5' end.DH847564|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,097,965 - 100,098,967)(100,206,726 - 100,207,841)
sequence
gaattcctaataagtcacacaacaaggtcctaggaaattttccacaccaa
tgtagaagcttttagtctttaccatttgatagttctttcacttttaacaa
tgaaaaatgactcttgtattggttaatgtttagcatttccatttttaaac
ttatgcaatgtatgggtctgtatgtaggtttatgaatatgagtccagtgt
ccatggaggccagaggagggaatcagatcctatgaagtagggggtagggg
ttgttgtcacctaccagtgaagatggtggcaagcaaacccaggtctacaa
gagcaatgtgtgctctgaaccacagagccaactctctagttcctaccaat
tgaatagaattaaatgccaacttgtcacaatctagaaaaacctgaggata
gagcatcaactgaagatgtattgaagtcaagttgcccttgggtatgtctg
taggcattggcctggctgttaactgacatagggagtcctagcccactgca
tgcagccctagttgataggctcttcccttatctaggtagggcaagagaaa
gctagatgaagcagaaatagaagcaggcagcaggtgtgggttcatccctc
tccactcctgagcctgagtacctgcgtgggttcctgctttgctttttcct
cagtgatggaactgcaattgtaagccaaataagctctttcccctcaaacc
aactactcttagtcagggcatttgtcacaggaccagaaatggaacttaac
taggagagtcactgttgttactatattgtttccactggaggactcatttt
tacctgttatgacaaaagggggaaaaaaaaacagtattgagaaatgttct
tttaaagctttttggtctttctgtttaggattttatgcctgctactttgg
gtagattccatctttttggtttagagaaggtaagtaatgtaaatctcatt
gtcttctagtgcctctgagctatctaaaaagaggttgttctcaattctta
tcgccctaat
gaattccttccttcattcattcattcatttcattctctctctctctctct
ttcacacacacacacacacacacacacacacacacactcaaaagcaacac
agtactgttggaactttatttagtaaactacctattataataattttgat
cactggctcccccaaaaaattaaataataaaaaatacgatcattcattca
ttcgcaagaggctttaagtaaattttagaaatatttccacctgaatttat
gaacatttaaaaggggttgaagtatatcctaacatgtgaagttaatattc
ataaggaaataaaacacatacatatcttcagtgccactaacagggattta
gccctgacctaaacaaccactgacacaagctactttgatatttcttatgc
tcctcttttatttaaaaaaaaaatgaaatttggctcaagtaaaattaggc
aggacagttgaagagcaaagctgatttaacagggaagatcacaatggaga
caaattggactcaactccattgaaacagagataaggaagctgtgaaggac
tgggttagaggtgaggaactagcaggaaagtgttggaggacttgaggagc
aaatggtctgtaagcttagggctgggagagagctcatttgcaattattga
cattatactgctcccctgccaccccattaaagatcagaccccaccctcca
ccccctttatccatgattacatttcaagagatggctctcaggtccttgag
aaagactattctgggttgtaaagatggcaagatgatttatatttgagaga
gagagacagagacagagagacagacagagagagacagagagatagagaga
cagagacagacagagatagagagacagagacagagagacagagacagaga
gagacacagagagagagagagagagagagagagagagaggagagggggcg
caaaagcgtttatgattgcaattacatgttttctaaagtaatgccggtca
aggaaaggtgacaagcttttgtagccagtgagaaggcttgttcaaattaa
gaaggaaacaatgaacgcatctggccaactgggaggaaaaaaaaaaactg
atattctttcctgcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100097965_100098967
seq2: B6Ng01-012H16.b_44_1053

seq1  GAATTCCTAATAAGTCACACAACAAGGTCCTAGGAAATTTTCCACACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAAGTCACACAACAAGGTCCTAGGAAATTTTCCACACCAA  50

seq1  TGTAGAAGCTTTTAGTCTTTACCATTTGATAGTTCTTTCACTTTTAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGCTTTTAGTCTTTACCATTTGATAGTTCTTTCACTTTTAACAA  100

seq1  TGAAAAATGACTCTTGTATTGGTTAATGTTTAGCATTTCCATTTTTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGACTCTTGTATTGGTTAATGTTTAGCATTTCCATTTTTAAAC  150

seq1  TTATGCAATGTATGGGTCTGTATGTAGGTTTATGAATATGAGTCCAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAATGTATGGGTCTGTATGTAGGTTTATGAATATGAGTCCAGTGT  200

seq1  CCATGGAGGCCAGAGGAGGGAATCAGATCCTATGAAGTAGGGGGTAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGGCCAGAGGAGGGAATCAGATCCTATGAAGTAGGGGGTAGGGG  250

seq1  TTGTTGTCACCTACCAGTGAAGATGGTGGCAAGCAAACCCAGGTCTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCACCTACCAGTGAAGATGGTGGCAAGCAAACCCAGGTCTACAA  300

seq1  GAGCAATGTGTGCTCTGAACCACAGAGCCAACTCTCTAGTTCCTACCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGTGTGCTCTGAACCACAGAGCCAACTCTCTAGTTCCTACCAAT  350

seq1  TGAATAGAATTAAATGCCAACTTGTCACAATCTAGAAAAACCTGAGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGAATTAAATGCCAACTTGTCACAATCTAGAAAAACCTGAGGATA  400

seq1  GAGCATCAACTGAAGATGTATTGAAGTCAAGTTGCCCTTGGGTATGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCAACTGAAGATGTATTGAAGTCAAGTTGCCCTTGGGTATGTCTG  450

seq1  TAGGCATTGGCCTGGCTGTTAACTGACATAGGGAGTCCTAGCCCACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATTGGCCTGGCTGTTAACTGACATAGGGAGTCCTAGCCCACTGCA  500

seq1  TGCAGCCCTAGTTGATAGGCTCTTCCCTTATCTAGGTAGGGCAAGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCTAGTTGATAGGCTCTTCCCTTATCTAGGTAGGGCAAGAGAAA  550

seq1  GCTAGATGAAGCAGAAATAGAAGCAGGCAGCAGGTGTGGGTTCATCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATGAAGCAGAAATAGAAGCAGGCAGCAGGTGTGGGTTCATCCCTC  600

seq1  TCCACTCCTGAGCCTGAGTACCTGCGTGGGTTCCTGCTTTGCTTTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCTGAGCCTGAGTACCTGCGTGGGTTCCTGCTTTGCTTTTTCCT  650

seq1  CAGTGATGGAACTGCAATTGTAAGCCAAATAAGCTCTTTCCCCTCAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGGAACTGCAATTGTAAGCCAAATAAGCTCTTTCCCCTCAAACC  700

seq1  AACTACTCTTAGTCAGGGCATTTGTCACAGGACCAGAAATGGAACTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTCTTAGTCAGGGCATTTGTCACAGGACCAGAAATGGAACTTAAC  750

seq1  TAGGAGAGTCACTGTTGTTACTATATTGTTTCCACTGGAGGACTCATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGTCACTGTTGTTACTATATTGTTTCCACTGGAGGACTCATTTT  800

seq1  TACCTGTTATGAC-AAAGGGGGAAAAAAAAACAGTAGTGAGAAATGTTCT  849
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TACCTGTTATGACAAAAGGGGGAAAAAAAAACAGTATTGAGAAATGTTCT  850

seq1  TTTAAAGCTTTTT-GTCTTTCTGTTTA-GAATTTATGCCTGCTACTT--G  895
      ||||||||||||| ||||||||||||| || ||||||||||||||||  |
seq2  TTTAAAGCTTTTTGGTCTTTCTGTTTAGGATTTTATGCCTGCTACTTTGG  900

seq1  GTAGATTCCATCTTTTT-GTTTAGAGAAAGGGAAG-AAAAAAAATCTCAT  943
      ||||||||||||||||| |||||||| |||| ||| ||   |||||||||
seq2  GTAGATTCCATCTTTTTGGTTTAGAG-AAGGTAAGTAATGTAAATCTCAT  949

seq1  TGCCTCTAAGTGCC-CTGAGC-ATTTAAAAAGAGGTTGTTCTCAAATCTT  991
      || ||   |||||| |||||| || |||||||||||||||||||| ||||
seq2  TGTCTTCTAGTGCCTCTGAGCTATCTAAAAAGAGGTTGTTCTCAATTCTT  999

seq1  ATCGCCACTAAT  1003
      |||||| |||||
seq2  ATCGCC-CTAAT  1010

seq1: chr10_100206726_100207841
seq2: B6Ng01-012H16.g_65_1182 (reverse)

seq1  TCATAGCAGGAAAGAATA-CAG-TTTTTTTTTTCCTCCCAAGTTGCCCAG  48
      |||| ||||||||||||| ||| |||||||||||||||| ||||| ||||
seq2  TCAT-GCAGGAAAGAATATCAGTTTTTTTTTTTCCTCCC-AGTTGGCCAG  48

seq1  ATGGCGTTCA-TGTTTCC-TCTCAATTGGA--CAGGCTTCTCACTGGCTA  94
      || ||||||| ||||||| ||| |||| ||   || ||||||||||||||
seq2  AT-GCGTTCATTGTTTCCTTCTTAATTTGAACAAGCCTTCTCACTGGCTA  97

seq1  CAAAGGC-TGTCACCTTTCCTTGACCGGGCATTACTTTAGAAAACATGTA  143
      |||| || |||||||||||||||||| |||||||||||||||||||||||
seq2  CAAAAGCTTGTCACCTTTCCTTGACC-GGCATTACTTTAGAAAACATGTA  146

seq1  ATTGCAATCATAAACGCTCTTGCGCCCTCTCTCTCTCTCTCTCTCTCTCT  193
      |||||||||||||||||| |||||||| ||||| ||||||||||||||||
seq2  ATTGCAATCATAAACGCTTTTGCGCCCCCTCTC-CTCTCTCTCTCTCTCT  195

seq1  CTCTCTCTCTCTCTCTGTGTCTCTCTCTGTCTCTGTCTCTCTGTCTCTGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTGTGTCTCTCTCTGTCTCTGTCTCTCTGTCTCTGT  245

seq1  CTCTCTATCTCTGTCTGTCTCTGTCTCTCTATCTCTCTGTCTCTCTCTGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATCTCTGTCTGTCTCTGTCTCTCTATCTCTCTGTCTCTCTCTGT  295

seq1  CTGTCTCTCTGTCTCTGTCTCTCTCTCTCAAATATAAATCATCTTGCCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTGTCTCTGTCTCTCTCTCTCAAATATAAATCATCTTGCCAT  345

seq1  CTTTACAACCCAGAATAGTCTTTCTCAAGGACCTGAGAGCCATCTCTTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAACCCAGAATAGTCTTTCTCAAGGACCTGAGAGCCATCTCTTGA  395

seq1  AATGTAATCATGGATAAAGGGGGTGGAGGGTGGGGTCTGATCTTTAATGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATCATGGATAAAGGGGGTGGAGGGTGGGGTCTGATCTTTAATGG  445

seq1  GGTGGCAGGGGAGCAGTATAATGTCAATAATTGCAAATGAGCTCTCTCCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGGGGAGCAGTATAATGTCAATAATTGCAAATGAGCTCTCTCCC  495

seq1  AGCCCTAAGCTTACAGACCATTTGCTCCTCAAGTCCTCCAACACTTTCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAAGCTTACAGACCATTTGCTCCTCAAGTCCTCCAACACTTTCCT  545

seq1  GCTAGTTCCTCACCTCTAACCCAGTCCTTCACAGCTTCCTTATCTCTGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTCCTCACCTCTAACCCAGTCCTTCACAGCTTCCTTATCTCTGTT  595

seq1  TCAATGGAGTTGAGTCCAATTTGTCTCCATTGTGATCTTCCCTGTTAAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAGTTGAGTCCAATTTGTCTCCATTGTGATCTTCCCTGTTAAAT  645

seq1  CAGCTTTGCTCTTCAACTGTCCTGCCTAATTTTACTTGAGCCAAATTTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGCTCTTCAACTGTCCTGCCTAATTTTACTTGAGCCAAATTTCA  695

seq1  TTTTTTTTTTAAATAAAAGAGGAGCATAAGAAATATCAAAGTAGCTTGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAATAAAAGAGGAGCATAAGAAATATCAAAGTAGCTTGTG  745

seq1  TCAGTGGTTGTTTAGGTCAGGGCTAAATCCCTGTTAGTGGCACTGAAGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTTGTTTAGGTCAGGGCTAAATCCCTGTTAGTGGCACTGAAGAT  795

seq1  ATGTATGTGTTTTATTTCCTTATGAATATTAACTTCACATGTTAGGATAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTTTTATTTCCTTATGAATATTAACTTCACATGTTAGGATAT  845

seq1  ACTTCAACCCCTTTTAAATGTTCATAAATTCAGGTGGAAATATTTCTAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACCCCTTTTAAATGTTCATAAATTCAGGTGGAAATATTTCTAAA  895

seq1  ATTTACTTAAAGCCTCTTGCGAATGAATGAATGATCGTATTTTTTATTAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAAAGCCTCTTGCGAATGAATGAATGATCGTATTTTTTATTAT  945

seq1  TTAATTTTTTGGGGGAGCCAGTGATCAAAATTATTATAATAGGTAGTTTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTGGGGGAGCCAGTGATCAAAATTATTATAATAGGTAGTTTA  995

seq1  CTAAATAAAGTTCCAACAGTACTGTGTTGCTTTTGAGTGTGTGTGTGTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAAGTTCCAACAGTACTGTGTTGCTTTTGAGTGTGTGTGTGTGT  1045

seq1  GTGTGTGTGTGTGTGTGTGTGAAAGAGAGAGAGAGAGAGAATGAAATGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGAAAGAGAGAGAGAGAGAGAATGAAATGAA  1095

seq1  TGAATGAATGAAGGAAGGAATTC  1116
      |||||||||||||||||||||||
seq2  TGAATGAATGAAGGAAGGAATTC  1118