BAC Information

Click to search

BAC

Clone NameB6Ng01-012O01
Chromosome10 (Build37)
Map Location 6,696,873 - 6,848,621
singlet/doubletdoublet
Overlap geneIyd
Upstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
Downstream genePpp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012O01.bB6Ng01-012O01.g
ACCDH847839DH847840
length1,112450
definitionDH847839|Mus musculus domesticus DNA, BAC clone: B6Ng01-012O01, 5' end.DH847840|Mus musculus domesticus DNA, BAC clone: B6Ng01-012O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,847,483 - 6,848,621)(6,696,873 - 6,697,328)
sequence
gaattccagtcagtttttagaaattcacttttgttcacagaaatttttct
cttgcctgtcagtgtctaagtgattgctttgagtttgacctctggatcta
caacacttgcactgtttcctggctgtttgtgcttgtttgtttccttttcc
agcttggcagaatctagggtcacttaggaagagaaaacctcaattgaaga
gctgcagatcttgaattgtacagattgttctttgggcgtgtctgtgggtt
ggatttcttcattgttgattgacatgggaaagttcagcttactgtgagca
gtgccacctcttgtcacctgctcctggtttgtataaggaagctgactgag
cacagccagacagagaagactagtaagcaacagaaaccatggttgagttc
tcccttcgattcccctaaacttacaatgaactgtaacctgtaagataaaa
taaccccctttctccccaagatgcttttggtcatagtgtctaacatagaa
aactaggacactggtcattcccagaaagtccctcctattgtcttctcacc
ttgtcacctcttcctctaagggctgagcaccctggcatcctgtggctttt
gtgtccgagcctgtctttctgatctagtctgatcttgccaatgagtcttt
gctgcagtgacagttgattgatgtgggagtcactgaggatccccaggttc
cttctgtatctctgatcctgtagtggttgcttctggactcttgagacttc
ttttacattcatctctttttcctgacttcatgttccaatgtacacaatag
taacagcttaaacccacagagcattattgggcaacaaagaccattatgga
cattttacatgtaacatcaaatagaattttttcttagtctatttaggtga
attttattatttattgcattttacaggccaaaaaaccataagcttaggga
agtagtagccttccagatcacctaggagaaatggcaaaccatcactgtct
gtgcttcaggatctctctagaacactatacagacttgactttttcttatc
tctgcaagtactcatgacacaattgggtcgctatgtcatggttgaggttc
atcactcattaa
tttctgcctttaggatgttccacctcctatttcctgcctgagccataggc
tgtaggctttttgattgataggtggctcatccatacaatgggcaaggtat
tctctacaaataacttttttatatcagagagtcagggaggtgatgagaag
tctgcagggcttagagggttgctttgtgtgtctaagaagaggtgactctt
cattcttccctctgcctctgtagagtgaaaggccaggattctagccttca
tttcacagtgggaaaccagacctggcgcgggggggggggggtcttacagg
gtgtatcccaaacaactagcattgggctggattccagccacattcagcag
tttccttaggacagtttgtgccaccagaggagtgacatgtcaaaaactat
gatgtcttggagggagggtgaaaggcaggatctgtaagaggatcagagtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_6847483_6848621
seq2: B6Ng01-012O01.b_41_1152 (reverse)

seq1  TTAATTGAGTGATGACACTCAACCATGAACCATTAGCGACACAATTGTGT  50
      |||| ||||||||||  |||||||||||  || ||||||| |||||||||
seq2  TTAA-TGAGTGATGAACCTCAACCATGA--CA-TAGCGACCCAATTGTGT  46

seq1  CACTGAGGTAACCTCTGCAGAGGATAAGAAAAAGGTTCAAAGGTCTGGTT  100
      || ||| |||  || |||||| ||||||||||||  ||||  |||||  |
seq2  CA-TGA-GTA--CT-TGCAGA-GATAAGAAAAAG--TCAA--GTCTG--T  84

seq1  ATAGTGTTCCTAGAGAGATTCCTTGAAGCACCAGACAGTGATGGGTTTGC  150
      |||||||| ||||||||||  | ||||||| ||||||||||| |||||||
seq2  ATAGTGTT-CTAGAGAGAT--CCTGAAGCA-CAGACAGTGAT-GGTTTGC  129

seq1  CATTTTCCTCCTAGGTGATCTTGGAAGGCTACTTAACTTCCCTAAGCCTT  200
      |||||  ||||||||||||| ||||||||||||  ||||||||||| |||
seq2  CATTT--CTCCTAGGTGATC-TGGAAGGCTACT--ACTTCCCTAAG-CTT  173

seq1  ATGGTTTTTTGGCCTGTAAAATGCAATAAATAATAAAATTCACCTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTTGGCCTGTAAAATGCAATAAATAATAAAATTCACCTAAATA  223

seq1  GACTAAGAAAAAATTCTATTTGATGTTACATGTAAAATGTCCATAATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGAAAAAATTCTATTTGATGTTACATGTAAAATGTCCATAATGGT  273

seq1  CTTTGTTGCCCAATAATGCTCTGTGGGTTTAAGCTGTTACTATTGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGCCCAATAATGCTCTGTGGGTTTAAGCTGTTACTATTGTGTAC  323

seq1  ATTGGAACATGAAGTCAGGAAAAAGAGATGAATGTAAAAGAAGTCTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACATGAAGTCAGGAAAAAGAGATGAATGTAAAAGAAGTCTCAAG  373

seq1  AGTCCAGAAGCAACCACTACAGGATCAGAGATACAGAAGGAACCTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGAAGCAACCACTACAGGATCAGAGATACAGAAGGAACCTGGGGA  423

seq1  TCCTCAGTGACTCCCACATCAATCAACTGTCACTGCAGCAAAGACTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTGACTCCCACATCAATCAACTGTCACTGCAGCAAAGACTCATT  473

seq1  GGCAAGATCAGACTAGATCAGAAAGACAGGCTCGGACACAAAAGCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATCAGACTAGATCAGAAAGACAGGCTCGGACACAAAAGCCACAG  523

seq1  GATGCCAGGGTGCTCAGCCCTTAGAGGAAGAGGTGACAAGGTGAGAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAGGGTGCTCAGCCCTTAGAGGAAGAGGTGACAAGGTGAGAAGAC  573

seq1  AATAGGAGGGACTTTCTGGGAATGACCAGTGTCCTAGTTTTCTATGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGGGACTTTCTGGGAATGACCAGTGTCCTAGTTTTCTATGTTAG  623

seq1  ACACTATGACCAAAAGCATCTTGGGGAGAAAGGGGGTTATTTTATCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATGACCAAAAGCATCTTGGGGAGAAAGGGGGTTATTTTATCTTAC  673

seq1  AGGTTACAGTTCATTGTAAGTTTAGGGGAATCGAAGGGAGAACTCAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACAGTTCATTGTAAGTTTAGGGGAATCGAAGGGAGAACTCAACCA  723

seq1  TGGTTTCTGTTGCTTACTAGTCTTCTCTGTCTGGCTGTGCTCAGTCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGTTGCTTACTAGTCTTCTCTGTCTGGCTGTGCTCAGTCAGCT  773

seq1  TCCTTATACAAACCAGGAGCAGGTGACAAGAGGTGGCACTGCTCACAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATACAAACCAGGAGCAGGTGACAAGAGGTGGCACTGCTCACAGTA  823

seq1  AGCTGAACTTTCCCATGTCAATCAACAATGAAGAAATCCAACCCACAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACTTTCCCATGTCAATCAACAATGAAGAAATCCAACCCACAGAC  873

seq1  ACGCCCAAAGAACAATCTGTACAATTCAAGATCTGCAGCTCTTCAATTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCAAAGAACAATCTGTACAATTCAAGATCTGCAGCTCTTCAATTGA  923

seq1  GGTTTTCTCTTCCTAAGTGACCCTAGATTCTGCCAAGCTGGAAAAGGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCTTCCTAAGTGACCCTAGATTCTGCCAAGCTGGAAAAGGAAA  973

seq1  CAAACAAGCACAAACAGCCAGGAAACAGTGCAAGTGTTGTAGATCCAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGCACAAACAGCCAGGAAACAGTGCAAGTGTTGTAGATCCAGAG  1023

seq1  GTCAAACTCAAAGCAATCACTTAGACACTGACAGGCAAGAGAAAAATTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACTCAAAGCAATCACTTAGACACTGACAGGCAAGAGAAAAATTTC  1073

seq1  TGTGAACAAAAGTGAATTTCTAAAAACTGACTGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACAAAAGTGAATTTCTAAAAACTGACTGGAATTC  1112

seq1: chr10_6696873_6697328
seq2: B6Ng01-012O01.g_66_521

seq1  GAATTCTTTCTGCCTTTAGGATGTTCCACCTCCTATTTCCTGCCTGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGCCTTTAGGATGTTCCACCTCCTATTTCCTGCCTGAGCC  50

seq1  ATAGGCTGTAGGCTTTTTGATTGATAGGTGGCTCATCCATACAATGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTGTAGGCTTTTTGATTGATAGGTGGCTCATCCATACAATGGGCA  100

seq1  AGGTATTCTCTACAAATAACTTTTTTATATCAGAGAGTCAGGGAGGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCTCTACAAATAACTTTTTTATATCAGAGAGTCAGGGAGGTGAT  150

seq1  GAGAAGTCTGCAGGGCTTAGAGGGTTGCTTTGTGTGTCTAAGAAGAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCTGCAGGGCTTAGAGGGTTGCTTTGTGTGTCTAAGAAGAGGTG  200

seq1  ACTCTTCATTCTTCCCTCTGCCTCTGTAGAGTGAAAGGCCAGGATTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCATTCTTCCCTCTGCCTCTGTAGAGTGAAAGGCCAGGATTCTAG  250

seq1  CCTTCATTTCACAGTGGGAAACCAGACCTGGCGCGGGGGGGGGGGGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTTCACAGTGGGAAACCAGACCTGGCGCGGGGGGGGGGGGGTCT  300

seq1  TACAGGGTGTATCCCAAACAACTAGCATTGGGCTGGATTCCAGCCACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTGTATCCCAAACAACTAGCATTGGGCTGGATTCCAGCCACATT  350

seq1  CAGCAGTTTCCTTAGGACAGTTTGTGCCACCAGAGGAGTGACATGTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTTCCTTAGGACAGTTTGTGCCACCAGAGGAGTGACATGTCAAA  400

seq1  AACTATGATGTCTTGGAGGGAGGGTGAAAGGCAGGATCTGTAAGAGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGATGTCTTGGAGGGAGGGTGAAAGGCAGGATCTGTAAGAGGATC  450

seq1  AGAGTG  456
      ||||||
seq2  AGAGTG  456