BAC Information

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BAC

Clone NameB6Ng01-013C03
Chromosome10 (Build37)
Map Location 83,458,111 - 83,582,552
singlet/doubletdoublet
Overlap geneC230099D08Rik
Upstream geneChst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225
Downstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013C03.bB6Ng01-013C03.g
ACCDH848028DH848029
length1,066571
definitionDH848028|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C03, 5' end.DH848029|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,581,482 - 83,582,552)(83,458,111 - 83,458,687)
sequence
gaattcacaaaagaaaattgatgaaatctaaagtagacgttaaaatgaca
aaacacgaactgacagcgcataacccaccacacccctttacatatgttaa
ataaattctagaaaggtgtctaagatcaaggtgttgactgtgagttctct
acagggcagagagagcaatattctaaatgcactgtgccctgattttttcc
tgtttttattaacatactttacaaggggacacggattaaatgctgttatt
ggtgaaaactagttctcaactgaaaactcctatcaatttatagatgaaat
ggagtgaattatttactcttcaaaaagtgtgaaaggggcaaggaaggttg
atgtcaggatagaggttaaggctgtgtattcaataaccaaagggaggaat
ggagaacctgcccaggaatgaatgctttgaactgtctgtgagctgatcca
gagttgcatggtgtcataagcttgggggcctttcccaggcatcactcttc
tgatatgcaaatggactgtgacatagcctcaggtactgattgccttcaaa
gtaaataagcatttaccattcattgtgtctaccaagtactcaactccaca
atatcagctgggacaagttctatgtgatgaaagggtagatgaatgaatga
gtgaatgaataaattaaattaataaaagacatagacttccctgataagat
ttataacttagcaacatagactctcgtatataaaacaactgaaagataga
attatcaaacaatttaaagaaagatgccaagtctctagcatgataacaaa
atgcctgagtcatttatagtaaatgaaagggtttcttttggctaacactt
tgagaggcttcagtccatggtctactagctccatgttttaagcctataat
gagactgcatataatcatggggagcatgtattaaagcaaatccattctct
catctgcagaaagcaaagggattgaagaggaagaagccacaatcccataa
tatattttaaaggcatagctccaatgacctagatctcctataagttcctc
ccattgaagtctacca
ttttgttctgaggagaataaacgagtttcagttaaaataagatccagatt
gcccgagaatgtccaagtctaaggacccgccagtgcaaaacaacttctag
tgtttgaatgagaacttttcccaaggctggttttggtgatggagacactg
ccagacacagcatcattaactaaagatcatggaaaatggctctgtgtttt
attgccgtgtgtgttaaatggcagagagcaagaaattggaaagctccaaa
cccagctatgctcagggaatggaaaacaaactgctctagccattgcattc
tgggaaggatactcagaaagagagacgcaacacatatttggaccagactc
agcaaaagctgggtaccctcatgctagcgaagacctctggccaccaagca
ccagtctgtaccttctccctcagatatgcctgaagctgtgtgggactcta
accttggaaaaagtcgggggcagggggtccatgggagtgtttgcttgggt
cctttgggtggccattcttttctgtgtgggctttgcagaggtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_83581482_83582552
seq2: B6Ng01-013C03.b_47_1112 (reverse)

seq1  TGGTAGAACTTCAACTGGGAGGAACTTAATAGGAGATCTTTAGGTCATTG  50
      |||||| ||||||| |||||||||||| ||||||||||  ||||||||||
seq2  TGGTAG-ACTTCAA-TGGGAGGAACTT-ATAGGAGATC--TAGGTCATTG  45

seq1  GAGCTATGCCTTTAAAATATATTATGGGATTGTGGCTTCTTCCTCTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATGCCTTTAAAATATATTATGGGATTGTGGCTTCTTCCTCTTCAA  95

seq1  TCCCTTTGCTTTCTGCAGATGAGACGAATGGATTTGCTTTAATACATGCT  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCCTTTGCTTTCTGCAGATGAGA-GAATGGATTTGCTTTAATACATGCT  144

seq1  -CCCATGATTATATGCAGTCTCATTATAGGCTTAAAACATGGAGCTAGTA  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGATTATATGCAGTCTCATTATAGGCTTAAAACATGGAGCTAGTA  194

seq1  GACCATGGACTGAAGCCTCTCAAAGTGTTAGCCAAATGAAACCCTTTCAT  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACCATGGACTGAAGCCTCTCAAAGTGTTAGCCAAAAGAAACCCTTTCAT  244

seq1  TTACTATAAATGACTCAGGCATTTTGTTATCATGCTAGAGACTTGGCATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATAAATGACTCAGGCATTTTGTTATCATGCTAGAGACTTGGCATC  294

seq1  TTTCTTTAAATTGTTTGATAATTCTATCTTTCAGTTGTTTTATATACGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAAATTGTTTGATAATTCTATCTTTCAGTTGTTTTATATACGAG  344

seq1  AGTCTATGTTGCTAAGTTATAAATCTTATCAGGGAAGTCTATGTCTTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGTTGCTAAGTTATAAATCTTATCAGGGAAGTCTATGTCTTTTA  394

seq1  TTAATTTAATTTATTCATTCACTCATTCATTCATCTACCCTTTCATCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAATTTATTCATTCACTCATTCATTCATCTACCCTTTCATCACA  444

seq1  TAGAACTTGTCCCAGCTGATATTGTGGAGTTGAGTACTTGGTAGACACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTGTCCCAGCTGATATTGTGGAGTTGAGTACTTGGTAGACACAA  494

seq1  TGAATGGTAAATGCTTATTTACTTTGAAGGCAATCAGTACCTGAGGCTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTAAATGCTTATTTACTTTGAAGGCAATCAGTACCTGAGGCTAT  544

seq1  GTCACAGTCCATTTGCATATCAGAAGAGTGATGCCTGGGAAAGGCCCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTCCATTTGCATATCAGAAGAGTGATGCCTGGGAAAGGCCCCCA  594

seq1  AGCTTATGACACCATGCAACTCTGGATCAGCTCACAGACAGTTCAAAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATGACACCATGCAACTCTGGATCAGCTCACAGACAGTTCAAAGCA  644

seq1  TTCATTCCTGGGCAGGTTCTCCATTCCTCCCTTTGGTTATTGAATACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCTGGGCAGGTTCTCCATTCCTCCCTTTGGTTATTGAATACACA  694

seq1  GCCTTAACCTCTATCCTGACATCAACCTTCCTTGCCCCTTTCACACTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAACCTCTATCCTGACATCAACCTTCCTTGCCCCTTTCACACTTTT  744

seq1  TGAAGAGTAAATAATTCACTCCATTTCATCTATAAATTGATAGGAGTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTAAATAATTCACTCCATTTCATCTATAAATTGATAGGAGTTTT  794

seq1  CAGTTGAGAACTAGTTTTCACCAATAACAGCATTTAATCCGTGTCCCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGAACTAGTTTTCACCAATAACAGCATTTAATCCGTGTCCCCTT  844

seq1  GTAAAGTATGTTAATAAAAACAGGAAAAAATCAGGGCACAGTGCATTTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTATGTTAATAAAAACAGGAAAAAATCAGGGCACAGTGCATTTAG  894

seq1  AATATTGCTCTCTCTGCCCTGTAGAGAACTCACAGTCAACACCTTGATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCTCTCTCTGCCCTGTAGAGAACTCACAGTCAACACCTTGATCT  944

seq1  TAGACACCTTTCTAGAATTTATTTAACATATGTAAAGGGGTGTGGTGGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACCTTTCTAGAATTTATTTAACATATGTAAAGGGGTGTGGTGGGT  994

seq1  TATGCGCTGTCAGTTCGTGTTTTGTCATTTTAACGTCTACTTTAGATTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGCTGTCAGTTCGTGTTTTGTCATTTTAACGTCTACTTTAGATTTC  1044

seq1  ATCAATTTTCTTTTGTGAATTC  1071
      ||||||||||||||||||||||
seq2  ATCAATTTTCTTTTGTGAATTC  1066

seq1: chr10_83458111_83458687
seq2: B6Ng01-013C03.g_69_645

seq1  GAATTCTTTTGTTCTGAGGAGAATAAACGAGTTTCAGTTAAAATAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTTCTGAGGAGAATAAACGAGTTTCAGTTAAAATAAGATC  50

seq1  CAGATTGCCCGAGAATGTCCAAGTCTAAGGACCCGCCAGTGCAAAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGCCCGAGAATGTCCAAGTCTAAGGACCCGCCAGTGCAAAACAAC  100

seq1  TTCTAGTGTTTGAATGAGAACTTTTCCCAAGGCTGGTTTTGGTGATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGTTTGAATGAGAACTTTTCCCAAGGCTGGTTTTGGTGATGGAG  150

seq1  ACACTGCCAGACACAGCATCATTAACTAAAGATCATGGAAAATGGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCAGACACAGCATCATTAACTAAAGATCATGGAAAATGGCTCTG  200

seq1  TGTTTTATTGCCGTGTGTGTTAAATGGCAGAGAGCAAGAAATTGGAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTGCCGTGTGTGTTAAATGGCAGAGAGCAAGAAATTGGAAAGC  250

seq1  TCCAAACCCAGCTATGCTCAGGGAATGGAAAACAAACTGCTCTAGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCCAGCTATGCTCAGGGAATGGAAAACAAACTGCTCTAGCCATT  300

seq1  GCATTCTGGGAAGGATACTCAGAAAGAGAGACGCAACACATATTTGGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGGGAAGGATACTCAGAAAGAGAGACGCAACACATATTTGGACC  350

seq1  AGACTCAGCAAAAGCTGGGTACCCTCATGCTAGCGAAGACCTCTGGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGCAAAAGCTGGGTACCCTCATGCTAGCGAAGACCTCTGGCCAC  400

seq1  CAAGCACCAGTCTGTACCTTCTCCCTCAGATATGCCTGAAGCTGTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCAGTCTGTACCTTCTCCCTCAGATATGCCTGAAGCTGTGTGGG  450

seq1  ACTCTAACCTTGGAAAAAGTCGGGGGCAGGGGGTCCATGGGAGTGTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACCTTGGAAAAAGTCGGGGGCAGGGGGTCCATGGGAGTGTTTGC  500

seq1  TTGGGTCCTTTGGGTGGCCATTCTTTTCTGTGTGGGCTTTGCAGAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCTTTGGGTGGCCATTCTTTTCTGTGTGGGCTTTGCAGAGGTGT  550

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTG  577
      |||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTG  577