BAC Information

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BAC

Clone NameB6Ng01-013C13
Chromosome10 (Build37)9 (Build37)
Map Location 123,050,046 - 123,051,1185,944,337 - 5,944,505
singlet/doubletsingletsinglet
Overlap geneAI851790
Upstream genePpm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream gene4930503E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013C13.bB6Ng01-013C13.g
ACCDH848048DH848049
length1,061762
definitionDH848048|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C13, 5' end.DH848049|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,050,046 - 123,051,118)(5,944,337 - 5,944,505)
sequence
gaattcacttagtaaaatacttcaaggaaaaaaaatcatctatatactcc
ttattttcttttatccatgtgactttcacaggtgctgtgtttaaaaaata
acaattgttagtctatccaagtgtttacatgcaattttgggcacaccata
cttctggccttggttttgtaaatgccttattttaagaaagaatacatcag
aaaaccacactgccccacagtttttatatatcacaaagtgtcacaccact
gtagatacttatttcatttctgaaatattcctgtatttctgctttttcat
ggtgtagcaagtgtctgtgtcataaaagtcatctacttgtatgcctggtc
ctggtctctgcaggatagagggctgaattggcaaccaaaatgactgctta
cttaatcactaatgaatgaatatgtcagcttccccaatatgtgtacgctg
agaatgagtgtggcagactctaggacagtgactctcaacctgtggatcat
gacccctttgggagttgaatatcagatgtattatatatcagatatttaca
tttcaattcatgacagtagcaaaattatacttatgacatggcaatgaaat
agttttatgtctgggggacaccacatcatgaagggtctcagcatcaggaa
ggtggagaaccactggcctaggctcatttcacattgtgagtgccgaaagg
gaagaaaaagtggaattaaaaagatttaagatttgtctgattgcccttgg
gtgaaatttattaccgctgcacattttacttcatctggaaaagataggaa
ctaaaagatgctcatttttttaatacttggttcagtatagagatagaaat
gattggaagtacagatattccttgaaggtttaaaatgtagctattgttct
gttatggattttatatttttcctggcaatgcttttctaaatctgaccgtc
tgaggaatagtttcggggtagcgagtcctactgaaaacattttgttattc
tttcttccgggtttgagacagccttgagtagcccagctgattggagcata
tatggcgatcg
gaattctttgtttagctctgtacctcattttttaatagggttgtttagtt
ttctggagtccaacctcttgcgttctttatatatatatatatatatatat
atatatatatatattcccagcaacaatatatatatattgtttacaatata
tatatatattggagaacacatatgatatgcactcactgataagtggatat
tagcctagaagctcagaatccttcttagaagggggaacaaaatacccatg
gaaggagttacaggtacaaagttcagagcagagactgaaggaatgatcac
ccagagactgccctacttggggatccattccataaacaatcaccaaaccc
agacactatggcagatgccaacaagagcttgctgacaagagcctggtata
gctgtctcctaagaggctctgccagtgcctggcaattacagaagtggatg
cttacaatcatccattgtacagagcacagggtcaccaatgaaggagctag
agaaagtaccctaggagcttaaggggtttgcaggcccataggaggaacaa
caatatgaactaaccagtacctccaaagcaccttgggactaaactaccaa
tcaaagaaaaacacatggtgggacttgtggctctagctgtatatgtagca
gaggatggcctagtcggtcatcagtgggaggagaagccctaggtgctgtg
aaggtgctatgccccagtatagggaatgccagggccaggaatgggagtgg
gtgggttgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_123050046_123051118
seq2: B6Ng01-013C13.b_45_1105

seq1  GAATTCACTTAGTAAAATACTTCAAGGAAAAAAAATCATCTATATACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAGTAAAATACTTCAAGGAAAAAAAATCATCTATATACTCC  50

seq1  TTATTTTCTTTTATCCATGTGACTTTCACAGGTGCTGTGTTTAAAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTTTTATCCATGTGACTTTCACAGGTGCTGTGTTTAAAAAATA  100

seq1  ACAATTGTTAGTCTATCCAAGTGTTTACATGCAATTTTGGGCACACCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTTAGTCTATCCAAGTGTTTACATGCAATTTTGGGCACACCATA  150

seq1  CTTCTGGCCTTGGTTTTGTAAATGCCTTATTTTAAGAAAGAATACATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCCTTGGTTTTGTAAATGCCTTATTTTAAGAAAGAATACATCAG  200

seq1  AAAACCACACTGCCCCACAGTTTTTATATATCACAAAGTGTCACACCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACACTGCCCCACAGTTTTTATATATCACAAAGTGTCACACCACT  250

seq1  GTAGATACTTATTTCATTTCTGAAATATTCCTGTATTTCTGCTTTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATACTTATTTCATTTCTGAAATATTCCTGTATTTCTGCTTTTTCAT  300

seq1  GGTGTAGCAAGTGTCTGTGTCATAAAAGTCATCTACTTGTATGCCTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGCAAGTGTCTGTGTCATAAAAGTCATCTACTTGTATGCCTGGTC  350

seq1  CTGGTCTCTGCAGGATAGAGGGCTGAATTGGCAACCAAAATGACTGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTCTGCAGGATAGAGGGCTGAATTGGCAACCAAAATGACTGCTTA  400

seq1  CTTAATCACTAATGAATGAATATGTCAGCTTCCCCAATATGTGTACGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCACTAATGAATGAATATGTCAGCTTCCCCAATATGTGTACGCTG  450

seq1  AGAATGAGTGTGGCAGACTCTAGGACAGTGACTCTCAACCTGTGGATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGTGTGGCAGACTCTAGGACAGTGACTCTCAACCTGTGGATCAT  500

seq1  GACCCCTTTGGGAGTTGAATATCAGATGTATTATATATCAGATATTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTTTGGGAGTTGAATATCAGATGTATTATATATCAGATATTTACA  550

seq1  TTTCAATTCATGACAGTAGCAAAATTATACTTATGACATGGCAATGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTCATGACAGTAGCAAAATTATACTTATGACATGGCAATGAAAT  600

seq1  AGTTTTATGTCTGGGGGACACCACATCATGAAGGGTCTCAGCATCAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATGTCTGGGGGACACCACATCATGAAGGGTCTCAGCATCAGGAA  650

seq1  GGTGGAGAACCACTGGCCTAGGCTCATTTCACATTGTGAGTGCCGAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAACCACTGGCCTAGGCTCATTTCACATTGTGAGTGCCGAAAGG  700

seq1  GAAGAAAAAGTGGAATTAAAAAGATTTAAGATTTGTCTGATTGCCCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAGTGGAATTAAAAAGATTTAAGATTTGTCTGATTGCCCTTGG  750

seq1  GTGAAATTTATTACCGCTGCACATTTTACTTCATCTGGAAAAGATAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTATTACCGCTGCACATTTTACTTCATCTGGAAAAGATAGGAA  800

seq1  CTAAAAGATGCTCATTTTTTTAATACTTGGTTCAGTATAGAGATAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGATGCTCATTTTTTTAATACTTGGTTCAGTATAGAGATAGAAAT  850

seq1  GATTGGAAGTACAGATATTCCTTGAAGGTTTAAAATGTAAGCTATTGTTT  900
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GATTGGAAGTACAGATATTCCTTGAAGGTTTAAAATGT-AGCTATTG-TT  898

seq1  CTGTTATGGATTTTATATTTTTCCTGGCAATGCTTTTCTAAATTCTGACC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTTATGGATTTTATATTTTTCCTGGCAATGCTTTTCTAAA-TCTGACC  947

seq1  GTTCTGAGGAATAGTTTCGGGGTAGCGAGTCCTACTGAAAACATTTTGTT  1000
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TCTGAGGAATAGTTTCGGGGTAGCGAGTCCTACTGAAAACATTTTGTT  996

seq1  ATTCTTTCTTCGGGTTTTGAGACAAGCCTTGGAGTAGCCCAGCTGAATTT  1050
      ||||||||||| || |||||||| |||||| |||||||||||||||  ||
seq2  ATTCTTTCTTCCGGGTTTGAGAC-AGCCTT-GAGTAGCCCAGCTGA--TT  1042

seq1  GGAAGGCCATATATTGGCGATCG  1073
      |||    |||||| |||||||||
seq2  GGA---GCATATA-TGGCGATCG  1061

seq1: chr9_5944337_5944505
seq2: B6Ng01-013C13.g_710_828 (reverse)

seq1  TCCCCTTTCCTCTCCAAAAATCCCCTACCCCCTCTTCCCTCTCCCTGCTA  50
                                                      | 
seq2  ------------------------------------------------TC  2

seq1  CCAAACCCACCCACTCCCACTTCCTGGCCCTGACATTGCCCTATACTGGG  100
      || |||||||||||||||| |||||||||||| |||| ||||||||||||
seq2  CCCAACCCACCCACTCCCA-TTCCTGGCCCTGGCATT-CCCTATACTGGG  50

seq1  GCATAGAACCTTCCCAAGACCAAGGGCCTCTCCTCCCATTGATGACCAAC  150
      |||||| |||||| ||  ||| ||||| |||||||||| |||||||| ||
seq2  GCATAGCACCTTCACAGCACCTAGGGCTTCTCCTCCCACTGATGACCGAC  100

seq1  TAGGCCATCCTCTGCTACA  169
      |||||||||||||||||||
seq2  TAGGCCATCCTCTGCTACA  119