BAC Information

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BAC

Clone NameB6Ng01-013K05
Chromosome13 (Build37)10 (Build37)
Map Location 29,331,223 - 29,331,74645,990,221 - 45,990,918
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneCdkal1, E2f3, Mboat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013K05.bB6Ng01-013K05.g
ACCDH848404DH848405
length955699
definitionDH848404|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K05, 5' end.DH848405|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,331,223 - 29,331,746)(45,990,221 - 45,990,918)
sequence
gaattcctgatctttccaacacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttccctatgtttgttgggt
ctttctgtggtttcggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcgtctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattgataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttattcttgaat
agttcttcgtgtttccacttggtttgatttcacccctggagtttgattat
tttcctgccatctactcctcttgggtgaattgcttcctttttctctagag
cttttaatgtgttgcaagctgctattattggctctctcccgtttcttctt
ggagg
gaattctgatatttcacaagtactttctcattaacactagacatttattt
gcatttatttaaagttttgtatttgaattttagagaaataaaatatttcc
aaaaaatacctttattccttaaatttaaacaaaattgtgtttttaattga
aatagaaacatgtcatttcttctctccctatcctcacttcagccattccc
agttactttctttctaacccctttcatgccccccactgctcatattgatg
acatctttttattttattgttattgttgcatatatatatatgtgtgtgta
tatatatgtatatatatacacatacatacatatatatgtatatgcacaaa
tatataaatccaacatgatgagtggatttttgtttgtttatgtgtttctg
ggatgactcctcagaactgtacaatcagtaagggagaatcatcttatggg
gaggctaactctttttctctgaagaatttgattggaagtgggattttgtt
cataagttgtttggatagctaaggtatagagatgttctgtttaggaaata
ccaacacagaaaacaccttcaggtagcccaagattgtattcactgctcta
gacctgtctctgctcagtatacatttaaggacacaagaaatattttgaca
ataaagtcataacatttatggcttgctagactctcatctgtgtgtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29331223_29331746
seq2: B6Ng01-013K05.b_478_999 (reverse)

seq1  CCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACAT  50
      |||||||||||||||||||||||||  ||| |||||||||| ||||||||
seq2  CCTCCAAGAAGAAACGGGAGAGAGCCAATAATAGCAGCTTG-CAACACAT  49

seq1  CTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACG  100
       ||||||||||||| ||||||||||| ||||||||||||||||||||| |
seq2  -TAAAAGCTCTAGAGAAAAAGGAAGC-AATTCACCCAAGAGGAGTAGATG  97

seq1  GCAGG-AAATAATCAAACT-CAGGGGTGAAATC-AACCAAGTGGAAACAA  147
      ||||| ||||||||||||| ||||||||||||| ||||||||||||||| 
seq2  GCAGGAAAATAATCAAACTCCAGGGGTGAAATCAAACCAAGTGGAAACAC  147

seq1  GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAA  197
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  GAAGAACTATTC-AAGAA-TAACCAAACGAGGAGTTGGTTCTTTGAGAAA  195

seq1  ATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGA  245

seq1  CAAAATCCTAATTAACAAAATCAGAACTGAAAAGGGAGACATAACAACAG  297
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAG  295

seq1  ATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATAC  345

seq1  TCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATA  395

seq1  CCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCA  445

seq1  TATCACCTAAAGAAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAA  497
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  TATCACCTAAAGAAATAGAAGCAGTTATCAATAGTCTCCCAGCCAAAAAA  495

seq1  AGCCCAGGACCAGACAGGTTTAGTGCA  524
      ||||||||||||||| |||||||||||
seq2  AGCCCAGGACCAGACGGGTTTAGTGCA  522

seq1: chr10_45990221_45990918
seq2: B6Ng01-013K05.g_63_761

seq1  GAATTCTGATATTTCACAAGTACTTTCTCATTAACACTAGACATTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATATTTCACAAGTACTTTCTCATTAACACTAGACATTTATTT  50

seq1  GCATTTATTTAAAGTTTTGTATTTGAATTTTAGAGAAATAAAATATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATTTAAAGTTTTGTATTTGAATTTTAGAGAAATAAAATATTTCC  100

seq1  AAAAAATACCTTTATTCCTTAAATTTAAACAAAATTGTGTTTTTAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACCTTTATTCCTTAAATTTAAACAAAATTGTGTTTTTAATTGA  150

seq1  AATAGAAACATGTCATTTCTTCTCTCCCTATCCTCACTTCAGCCATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACATGTCATTTCTTCTCTCCCTATCCTCACTTCAGCCATTCCC  200

seq1  AGTTACTTTCTTTCTAACCCCTTTCATGCCCCCCACTGCTCATATTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTCTTTCTAACCCCTTTCATGCCCCCCACTGCTCATATTGATG  250

seq1  ACATCTTTTTATTTTATTGTTATTGTTGCATATATATATATGTGTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTTTATTTTATTGTTATTGTTGCATATATATATATGTGTGTGTA  300

seq1  TATATATGTATATATATACACATACATACATATATATGTATATGCACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTATATATATACACATACATACATATATATGTATATGCACAAA  350

seq1  TATATAAATCCAACATGATGAGTGGATTTTTGTTTGTTTATGTGTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATCCAACATGATGAGTGGATTTTTGTTTGTTTATGTGTTTCTG  400

seq1  GGATGACTCCTCAGAACTGTACAATCAGTAAGGGAGAATCATCTTATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACTCCTCAGAACTGTACAATCAGTAAGGGAGAATCATCTTATGGG  450

seq1  GAGGCTAACTCTTTTTCTCTGAAGAATTTGATTGGAAGTGGGATTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAACTCTTTTTCTCTGAAGAATTTGATTGGAAGTGGGATTTTGTT  500

seq1  CATAAGTTGTTTGGATAGCTAAGGTATAGAGATGTTCTGTTTAGGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTTGTTTGGATAGCTAAGGTATAGAGATGTTCTGTTTAGGAAATA  550

seq1  CCAACACAGAAAACACCTTCAGGTAGCCCAAGATTGTATTCACTGCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACAGAAAACACCTTCAGGTAGCCCAAGATTGTATTCACTGCTCTA  600

seq1  GACCTGTCTCTGCTCAGTATACATTTAAGGACACAAGAAATA-TTTGACA  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GACCTGTCTCTGCTCAGTATACATTTAAGGACACAAGAAATATTTTGACA  650

seq1  ATAAAGTCATAACATTTATGGCTTGCTAGACTCTCATCTGTGTGTGGGT  698
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCATAACATTTATGGCTTGCTAGACTCTCATCTGTGTGTGGGT  699