BAC Information

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BAC

Clone NameB6Ng01-013K12
Chromosome10 (Build37)
Map Location 84,740,978 - 84,884,473
singlet/doubletdoublet
Overlap geneEG666974, Btbd11
Upstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1
Downstream geneEG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013K12.bB6Ng01-013K12.g
ACCDH848418DH848419
length1,0961,146
definitionDH848418|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K12, 5' end.DH848419|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,740,978 - 84,742,088)(84,883,353 - 84,884,473)
sequence
gaattcatgggttttaaatatttgtgatctcaattctaccaaaaagtgaa
tgtccaactttgttgagtaggtgtccactatgtttataaattgtatggcc
cagttgcccatgttttggtcatgtatgtgctgtggcatgtcctgcagtat
atggctcagatgctgctagacaactgagcgtgtagaggcttgcaagaaga
aggtggaggtgaggctttttttttttaagctccacagacacaggtactca
agcactgggaacccttgtagaccttaccctatagattcccccatctagat
gcttgtttatatctttaaaaatgtcatttctattgaacaagtcaatgtag
ctacaatatttctctcagttccgtgagaggcaagttaattgcgtcccaac
cccagctgaccactcagaagttatggaggacatgactggtggttagggct
ggtgtgggcacagtagtcgtggggactgagccctcagtgtgtgcacctga
cactgtctcaagtagatagcagcagatatgaggtcacttcgaggacatgc
agccagtgtctgctgcagagctgctcactggtggggagaaattgctctct
ctttttgaggtcacagaagtcttggcttgattttttttttcccagcaaac
ctttccacggtctctcctgctcctaagagcttctgtgcactttgtagatt
ccttggaagtcgatcaaagctacatgctgcaatatttcctacactgacat
gggctatgaaaaggcaagagcaatggcttgtagtcctcacagcatcctga
aaatgcacccttgagaaagaatattagtagctgttccattctttacaatg
gagagggggaaattaagttattcccgcaatgtattccagtcaaataatta
aagcacactcgtctgctaattccacttcgagatgctccttgcttttgaag
gttgctttgagaggctaaacgaggacccacttcttggggtagccttgaat
caatttcaaaacatcttccaaggcttgttaaacaaaatcgcatgaaaatc
atggcccagcacaatcaagtcactttagaagtagtaacttccagct
gaattcactattatttttattattgctccactgtgtcccccctgagcctg
taatagaaagctagagaagcgcttcattggaggaagaaaatagagttctg
agctccaagttaagcagcctgtggtgaaaagatgaaaacagataacagga
taagaaaacggctttgtgtgtgtcagccccaggagctgccgggttcccca
gtgagactgaagacagctggacagcgatgccccggcctcccaaacaccag
ctgtccaaggaagtccagaccccacctgccgtaacaggctgcagcccaca
tgctgccttctgtgcatgtcatgccgtttacaacacagaaaatctaaacc
caccggagtgttagctccaaggccactggctcagcgctgcagctcaggaa
cctgtaagaggcagcctgggaaggtatggaaaaggtcctgcgagctagag
acactcctggcttggtctgtgattcatctgcatgtaagagtaggtatccc
taagacggtacatgcagagactcaatgctactcagcaatccaaagcaaca
ccatcctccaaggcttccagaaaggcttctgctggtcgcaatgagtgcag
tgtgactcctcctggggaggcatggaccagtgcacagtcagcccacatag
ggctccaacggcaggctaaagaaacgatttcccattcctgaagtatttcc
tcacccttgctgagtcacaggaggaagtgagaagcctgtgctcctgcggg
caggcaggccactgggcagccctgagttctgaagtgtttacctctctgca
tgccccactgcctcaacggacccctgttcctcttcttcaagtccctgtct
ttctgtgccttcacacactaaccctgagaaaaggcttcaaaagtaataat
ccacttgtacctgtcctgattttccaagaattaccacagccccaagtctt
cctcattatagatgtgtggccaaggtgccccaggaactatatatttggct
tttggtgggcaaatcttattgcaagaatacaacttgaatgaacgactggt
aaaagccatattctgcccactgctctggcaaactatacccaatctcctct
gtaagacctctcacaaggttgcttctagctcacaaaggtttgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_84740978_84742088
seq2: B6Ng01-013K12.b_49_1144

seq1  GAATTCATGGGTTTTAAATATTTGTGATCTCAATTCTACCAAAAAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGTTTTAAATATTTGTGATCTCAATTCTACCAAAAAGTGAA  50

seq1  TGTCCAACTTTGTTGAGTAGGTGTCCACTATGTTTATAAATTGTATGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAACTTTGTTGAGTAGGTGTCCACTATGTTTATAAATTGTATGGCC  100

seq1  CAGTTGCCCATGTTTTGGTCATGTATGTGCTGTGGCATGTCCTGCAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCCATGTTTTGGTCATGTATGTGCTGTGGCATGTCCTGCAGTAT  150

seq1  ATGGCTCAGATGCTGCTAGACAACTGAGCGTGTAGAGGCTTGCAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGATGCTGCTAGACAACTGAGCGTGTAGAGGCTTGCAAGAAGA  200

seq1  AGGTGGAGGTGAGGCTTTTTTTTTTTAAGCTCCACAGACACAGGTACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGGTGAGGCTTTTTTTTTTTAAGCTCCACAGACACAGGTACTCA  250

seq1  AGCACTGGGAACCCTTGTAGACCTTACCCTATAGATTCCCCCATCTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGAACCCTTGTAGACCTTACCCTATAGATTCCCCCATCTAGAT  300

seq1  GCTTGTTTATATCTTTAAAAATGTCATTTCTATTGAACAAGTCAATGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTATATCTTTAAAAATGTCATTTCTATTGAACAAGTCAATGTAG  350

seq1  CTACAATATTTCTCTCAGTTCCGTGAGAGGCAAGTTAATTGCGTCCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATATTTCTCTCAGTTCCGTGAGAGGCAAGTTAATTGCGTCCCAAC  400

seq1  CCCAGCTGACCACTCAGAAGTTATGGAGGACATGACTGGTGGTTAGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGACCACTCAGAAGTTATGGAGGACATGACTGGTGGTTAGGGCT  450

seq1  GGTGTGGGCACAGTAGTCGTGGGGACTGAGCCCTCAGTGTGTGCACCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGCACAGTAGTCGTGGGGACTGAGCCCTCAGTGTGTGCACCTGA  500

seq1  CACTGTCTCAAGTAGATAGCAGCAGATATGAGGTCACTTCGAGGACATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTCAAGTAGATAGCAGCAGATATGAGGTCACTTCGAGGACATGC  550

seq1  AGCCAGTGTCTGCTGCAGAGCTGCTCACTGGTGGGGAGAAATTGCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGTCTGCTGCAGAGCTGCTCACTGGTGGGGAGAAATTGCTCTCT  600

seq1  CTTTTTGAGGTCACAGAAGTCTTGGCTTGATTTTTTTTTTCCCAGCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAGGTCACAGAAGTCTTGGCTTGATTTTTTTTTTCCCAGCAAAC  650

seq1  CTTTCCACGGTCTCTCCTGCTCCTAAGAGCTTCTGTGCACTTTGTAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACGGTCTCTCCTGCTCCTAAGAGCTTCTGTGCACTTTGTAGATT  700

seq1  CCTTGGAAGTCGATCAAAGCTACATGCTGCAATATTTCCTACACTGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAGTCGATCAAAGCTACATGCTGCAATATTTCCTACACTGACAT  750

seq1  GGGCTATGAAAAGGCAAGAGCAATGGCTTGTAGTCCTCACAGCATCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATGAAAAGGCAAGAGCAATGGCTTGTAGTCCTCACAGCATCCTGA  800

seq1  AAATGCACCCTTGAGAAAGAATATTAGTAGCTGTTCCATTCTTTACAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACCCTTGAGAAAGAATATTAGTAGCTGTTCCATTCTTTACAATG  850

seq1  GAGAGGGGGAAATTAAGTTATTCCCGCAATGTATTCCAGTCAAATAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGGAAATTAAGTTATTCCCGCAATGTATTCCAGTCAAATAATTA  900

seq1  AAGCACACTCGTCTGCTAATTCCACTTCGAGATGCTCCTTGCTTTTGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGCACACTCGTCTGCTAATTCCACTTCGAGATGCTCCTTGCTTTTGAAG  950

seq1  GTTTTGCTTTGAGGAGGGCTAAACGAGGACACACTTCTTGGGGTAGCCTT  1000
      |  ||||||||||   |||||||||||||| |||||||||||||||||||
seq2  G--TTGCTTTGAG--AGGCTAAACGAGGACCCACTTCTTGGGGTAGCCTT  996

seq1  GAATTCAATTTCAAAAACAGCCTCACAAGGCTGGTTAAACAAAAATCCCC  1050
      ||| |||||||| |||||| | || ||||||| ||||||| |||||| | 
seq2  GAA-TCAATTTC-AAAACATCTTC-CAAGGCTTGTTAAAC-AAAATCGC-  1041

seq1  ATTGAAAATCATGGCCCAGCCAACCAATCAAGTCACCTTTAGAAGTTAGT  1100
        ||||||||||||||||||    ||||||||||| ||||||||| ||||
seq2  -ATGAAAATCATGGCCCAGC---ACAATCAAGTCA-CTTTAGAAG-TAGT  1085

seq1  AACTTTCAGCT  1111
      ||||| |||||
seq2  AACTTCCAGCT  1096

seq1: chr10_84883353_84884473
seq2: B6Ng01-013K12.g_68_1213 (reverse)

seq1  AAAACAAACCCTTGT--GCATGAAGCA--CATG-GTGAAGTCCCTCAGAG  45
      |||||||||| ||||  ||  ||||||  | || | || |||   |||||
seq2  AAAACAAACCTTTGTGAGCTAGAAGCAACCTTGTGAGAGGTCTTACAGAG  50

seq1  GAGTTTGGTGTTTGTTTG-CAGAGCAGTGGGCAG-ATATGGCTTCT-CCA  92
      ||| ||||   | ||||| ||||||||||||||| ||||||||| | |||
seq2  GAGATTGGGTATAGTTTGCCAGAGCAGTGGGCAGAATATGGCTTTTACCA  100

seq1  GTCGGTCATCCAGGTTGTA-TCTTGC-ATAAGA-TTGCCCACCAAAGGC-  138
      |||| |||| || |||||| |||||| |||||| |||||||||||| || 
seq2  GTCGTTCATTCAAGTTGTATTCTTGCAATAAGATTTGCCCACCAAAAGCC  150

seq1  ---AATATAGGTCCTGGTGCACCTTGGCCACCATTCTAT--TGAGG-AGA  182
          |||||| |||||| |||||||||||||   |||||  ||||| |||
seq2  AAATATATAGTTCCTGGGGCACCTTGGCCACACATCTATAATGAGGAAGA  200

seq1  CTTGGGGCTGTGGT-ATTCT--GGAAATCAGGACA-GTACAAGTGGATTT  228
      |||||||||||||| |||||  | ||||||||||| ||||||||||||| 
seq2  CTTGGGGCTGTGGTAATTCTTGGAAAATCAGGACAGGTACAAGTGGATTA  250

seq1  ATACTTTTG-AGCCTTTTCTCAGGGTTTGTGTGTGAAGGCACAGAAAGAC  277
       |||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  TTACTTTTGAAGCCTTTTCTCAGGGTTAGTGTGTGAAGGCACAGAAAGAC  300

seq1  AGGGACTTGGAGAAGAGGAGACAGGGTTCCGTGGAGGCAGT-GGGCATGC  326
      ||||||||| ||||||||| |||||| ||||| |||||||| ||||||||
seq2  AGGGACTTGAAGAAGAGGA-ACAGGGGTCCGTTGAGGCAGTGGGGCATGC  349

seq1  AGAGAGGTAAACACTTCAGAACTCAGGGCTGCCCAGTGGCCTGCCTGCCC  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTAAACACTTCAGAACTCAGGGCTGCCCAGTGGCCTGCCTGCCC  399

seq1  GCAGGAGCACAGGCTTCTCACTTCCTCCTGTGACTCAGCAA-GGTGAGGA  425
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCAGGAGCACAGGCTTCTCACTTCCTCCTGTGACTCAGCAAGGGTGAGGA  449

seq1  AATACTTCAGGAATGGG-AATCGTTTCTTTAGCCTGCCGTTGGAGCCCTA  474
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATACTTCAGGAATGGGAAATCGTTTCTTTAGCCTGCCGTTGGAGCCCTA  499

seq1  TGTGGGCTGACTGTGCACTGGTCCATGCCTCCCCAGGAGGAGTCACACTG  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTGACTGTGCACTGGTCCATGCCTCCCCAGGAGGAGTCACACTG  549

seq1  CACTCATTGCGACCAGCAGAAGCCTTTCTGGAAGCCTTGGAGGATGGTGT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTGCGACCAGCAGAAGCCTTTCTGGAAGCCTTGGAGGATGGTGT  599

seq1  TGCTTTGGATTGCTGAGTAGCATTGAGTCTCTGCATGTACCGTCTTAGGG  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGATTGCTGAGTAGCATTGAGTCTCTGCATGTACCGTCTTAGGG  649

seq1  ATACCTACTCTTACATGCAGATGAATCACAGACCAAGCCAGGAGTGTCTC  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTACTCTTACATGCAGATGAATCACAGACCAAGCCAGGAGTGTCTC  699

seq1  TAGCTCGCAGGACCTTTTCCATACCTTCCCAGGCTGCCTCTTACAGGTTC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCGCAGGACCTTTTCCATACCTTCCCAGGCTGCCTCTTACAGGTTC  749

seq1  CTGAGCTGCAGCGCTGAGCCAGTGGCCTTGGAGCTAACACTCCGGTGGGT  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGCAGCGCTGAGCCAGTGGCCTTGGAGCTAACACTCCGGTGGGT  799

seq1  TTAGATTTTCTGTGTTGTAAACGGCATGACATGCACAGAAGGCAGCATGT  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTCTGTGTTGTAAACGGCATGACATGCACAGAAGGCAGCATGT  849

seq1  GGGCTGCAGCCTGTTACGGCAGGTGGGGTCTGGACTTCCTTGGACAGCTG  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCAGCCTGTTACGGCAGGTGGGGTCTGGACTTCCTTGGACAGCTG  899

seq1  GTGTTTGGGAGGCCGGGGCATCGCTGTCCAGCTGTCTTCAGTCTCACTGG  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGGAGGCCGGGGCATCGCTGTCCAGCTGTCTTCAGTCTCACTGG  949

seq1  GGAACCCGGCAGCTCCTGGGGCTGACACACACAAAGCCGTTTTCTTATCC  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCGGCAGCTCCTGGGGCTGACACACACAAAGCCGTTTTCTTATCC  999

seq1  TGTTATCTGTTTTCATCTTTTCACCACAGGCTGCTTAACTTGGAGCTCAG  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTGTTTTCATCTTTTCACCACAGGCTGCTTAACTTGGAGCTCAG  1049

seq1  AACTCTATTTTCTTCCTCCAATGAAGCGCTTCTCTAGCTTTCTATTACAG  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATTTTCTTCCTCCAATGAAGCGCTTCTCTAGCTTTCTATTACAG  1099

seq1  GCTCAGGGGGGACACAGTGGAGCAATAATAAAAATAATAGTGAATTC  1121
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGGGGACACAGTGGAGCAATAATAAAAATAATAGTGAATTC  1146