BAC Information

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BAC

Clone NameB6Ng01-014D15
Chromosome10 (Build37)6 (Build37)
Map Location 5,698,091 - 5,699,200144,399,985 - 144,400,297
singlet/doubletsingletsinglet
Overlap geneEsr1
Upstream geneVip, Myct1, Syne1
Downstream geneLOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014D15.bB6Ng01-014D15.g
ACCDH848829DH848830
length1,095129
definitionDH848829|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D15, 5' end.DH848830|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,698,091 - 5,699,200)(144,399,985 - 144,400,297)
sequence
gaattccaggttgaaggaaaaaagcagtggggggatgggggaatgggaca
aggtatgtgtggcctggagaccctagtagaggtatccagacattagatgc
ccaaagccaaaattgttaagtcacctcttgttcagaacatagccatcctc
tcaattaaatactgtggcttgaactgcctacccttcatggttcatgatga
cagcagccacagctaccaaacagctggacaaaaacttctgctccaaactg
catccctgggagtctctgtgagaatcctaatggctttgtgctgatggtta
attcttgactaatatattacacctaaagatttttccatcttcaagattca
tttttattacacatatgcatggatgcagaagcccacggcggccagaagca
tctgggtttagaggtagtgactctgcctaacaagggtgctgagaactcat
ctcagtgcctttttaagagcagtatgttcttttaaccacagacctatttc
tccagacccaaatgttatcttacaatgcaattgatgaactgacaaacact
actaaaatgaattatcatagaaacattaagcataaaagcatgagatagct
aaacctcataaacacacacacacacacacacacacacacacacacagaaa
acctggttaccaaaacacatatcctgagagaaaaaaacgcctttcttttc
tctaatcaaagacatagtgtttcttactcataaacaaaataactctaatt
agcaaataaatctaagtctataataaccctttcggaatttacacagagga
ggtcacaaagtcactttccatcttcctgacaaagtggatcacaggcagta
ttccaacaacaagctgtcacttacatttcggttaatggactcataatttt
tgcaatgtaattaactgcccggagagactaataccctatgaactcagtcg
actatttataggggtcgtttgaattgaaatccaaaccgtttcctagaaaa
aaaagaaagcagaggtggcctttcaaaaactcatttaaaaagtcaccaac
tgtaactttccagggtattctcccgaagttgggggtgggggggga
actcagtagaccaggctggctgtgaactcagagatccatctgattttgtt
tcctgagtgctgggactaaaggtatgtaccatcagtgtcctggtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5698091_5699200
seq2: B6Ng01-014D15.b_47_1141

seq1  GAATTCCAGGTTGAAGGAAAAAAGCAGTGGGGGGATGGGGGAATGGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTGAAGGAAAAAAGCAGTGGGGGGATGGGGGAATGGGACA  50

seq1  AGGTATGTGTGGCCTGGAGACCCTAGTAGAGGTATCCAGACATTAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTGTGGCCTGGAGACCCTAGTAGAGGTATCCAGACATTAGATGC  100

seq1  CCAAAGCCAAAATTGTTAAGTCACCTCTTGTTCAGAACATAGCCATCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCAAAATTGTTAAGTCACCTCTTGTTCAGAACATAGCCATCCTC  150

seq1  TCAATTAAATACTGTGGCTTGAACTGCCTACCCTTCATGGTTCATGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAAATACTGTGGCTTGAACTGCCTACCCTTCATGGTTCATGATGA  200

seq1  CAGCAGCCACAGCTACCAAACAGCTGGACAAAAACTTCTGCTCCAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCACAGCTACCAAACAGCTGGACAAAAACTTCTGCTCCAAACTG  250

seq1  CATCCCTGGGAGTCTCTGTGAGAATCCTAATGGCTTTGTGCTGATGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGGGAGTCTCTGTGAGAATCCTAATGGCTTTGTGCTGATGGTTA  300

seq1  ATTCTTGACTAATATATTACACCTAAAGATTTTTCCATCTTCAAGATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGACTAATATATTACACCTAAAGATTTTTCCATCTTCAAGATTCA  350

seq1  TTTTTATTACACATATGCATGGATGCAGAAGCCCACGGCGGCCAGAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTACACATATGCATGGATGCAGAAGCCCACGGCGGCCAGAAGCA  400

seq1  TCTGGGTTTAGAGGTAGTGACTCTGCCTAACAAGGGTGCTGAGAACTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTAGAGGTAGTGACTCTGCCTAACAAGGGTGCTGAGAACTCAT  450

seq1  CTCAGTGCCTTTTTAAGAGCAGTATGTTCTTTTAACCACAGACCTATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCCTTTTTAAGAGCAGTATGTTCTTTTAACCACAGACCTATTTC  500

seq1  TCCAGACCCAAATGTTATCTTACAATGCAATTGATGAACTGACAAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCCAAATGTTATCTTACAATGCAATTGATGAACTGACAAACACT  550

seq1  ACTAAAATGAATTATCATAGAAACATTAAGCATAAAAGCATGAGATAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATGAATTATCATAGAAACATTAAGCATAAAAGCATGAGATAGCT  600

seq1  AAACCTCATAAACACACACACACACACACACACACACACACACACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCATAAACACACACACACACACACACACACACACACACACAGAAA  650

seq1  ACCTGGTTACCAAAACACATATCCTGAGAGAAAAAAACGCCTTTC-TTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCTGGTTACCAAAACACATATCCTGAGAGAAAAAAACGCCTTTCTTTTC  700

seq1  TCTAATCAAAGACATAGTGTTTCTTACTCATAAACAAAATAACTCTAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCAAAGACATAGTGTTTCTTACTCATAAACAAAATAACTCTAATT  750

seq1  AGCAAATAAATCTAAGTCTATAATAACCC-TTCGGAA-TTACACAGAGGA  797
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  AGCAAATAAATCTAAGTCTATAATAACCCTTTCGGAATTTACACAGAGGA  800

seq1  GGTCACAAAGTCACTTTCCATCTTCCTGACAAAGTGGATCACAGGCAGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAAAGTCACTTTCCATCTTCCTGACAAAGTGGATCACAGGCAGTA  850

seq1  -TCCAACAACAAGCTGTCACTTACATTTCGGTTAAATGACTCATATATTT  896
       ||||||||||||||||||||||||||||||||||  |||||  ||| ||
seq2  TTCCAACAACAAGCTGTCACTTACATTTCGGTTAATGGACTC--ATAATT  898

seq1  TTTGCAATGTAAATTAACTGCCTGATGAGACTAATACCCTATGAACTCAG  946
      |||||||||| ||||||||||| |  ||||||||||||||||||||||||
seq2  TTTGCAATGT-AATTAACTGCCCGGAGAGACTAATACCCTATGAACTCAG  947

seq1  TCGACTATTTATAGTGGTCGTTTTGTAATTGAAAT-CAAACCGTTATCCT  995
      |||||||||||||| ||||||||   ||||||||| ||||||||| ||||
seq2  TCGACTATTTATAGGGGTCGTTT--GAATTGAAATCCAAACCGTT-TCCT  994

seq1  AG-AAAAAAAGAAAGCAG-TGTGG-CTTTCAAAAACTCTATTATAAAAAG  1042
      || |||||||||||||||  |||| ||||||||||||| ||| |||||||
seq2  AGAAAAAAAAGAAAGCAGAGGTGGCCTTTCAAAAACTC-ATT-TAAAAAG  1042

seq1  TCACCAACTGTAACTTTCCAGGGTTTATTTCCCGAGGTTGGGGTTGGGGG  1092
      |||||||||||||||||||||||| | | |||||| ||||||| ||||||
seq2  TCACCAACTGTAACTTTCCAGGGTAT-TCTCCCGAAGTTGGGGGTGGGGG  1091

seq1  GGGGGGGTTGGGGGGGGA  1110
      |||               
seq2  GGGA--------------  1095

seq1: chr6_144399985_144400297
seq2: B6Ng01-014D15.g_121_201 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACCACATATACCACA  50
      ||||||||||||||||||||||||||||||||||||||      |  |||
seq2  CACACACACACACACACACACACACACACACACACACC------AGGACA  44

seq1  -TCATACATCCACACACATACCAT--GCCCCCCCACAC---ACACACACA  94
       | ||          ||||||| |  | |||  ||| |   | |      
seq2  CTGAT-------GGTACATACCTTTAGTCCCAGCACTCAGGAAA------  81

seq1  TTTTGTTGTGTTGTCTCACTCAGGGGACTGAGAAAATACCCCCTGAAGAC  144
                                                        
seq2  --------------------------------------------------  81

seq1  CGGTGACTTCTGCTAAGGGAGAATAGTTTATCACAGGTCTTGCAATCATC  194
                                                        
seq2  --------------------------------------------------  81

seq1  ACCAATGCTTTGTAGAGGCAAGAGAAGCACAGAGATGAGGAAGTGGATCT  244
                                                        
seq2  --------------------------------------------------  81

seq1  GAAGGGAAAGAATTGGCAGCAGGAGCCTGAGGATCTGTCTTTGGATCCTC  294
                                                        
seq2  --------------------------------------------------  81

seq1  CTTCCAGCACTCATGGAAA  313
                         
seq2  -------------------  81