BAC Information

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BAC

Clone NameB6Ng01-014H14
Chromosome9 (Build37)10 (Build37)
Map Location 90,441,143 - 90,442,2086,576,320 - 6,576,439
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014H14.bB6Ng01-014H14.g
ACCDH849006DH849007
length1,049284
definitionDH849006|Mus musculus domesticus DNA, BAC clone: B6Ng01-014H14, 5' end.DH849007|Mus musculus domesticus DNA, BAC clone: B6Ng01-014H14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,441,143 - 90,442,208)(6,576,320 - 6,576,439)
sequence
gaattctgaaaaatataggtgtagttttgatttctttcttttgaatgtac
atatgaaatatctatttatactttatttgaagccactcttttacactgca
tttgttcttggggtttttttttaaatcatgtatgattaaaagggcgtaaa
atagttctatgaaatttttttctctagttacaatcatagcatgtatgtca
agtcaaattaggtcatattattgcttatataatgagaatatatgcaaata
catcttgaacaaagttgaagttctcacaattgtcccacattctcagctgc
ttttgacaagccatgtcctaaaaaaaaaaataagaaaaaaaataagcttt
ttaatgtaggtggttttgcaatgaaggaagttatttaaaagaccaaaatg
gtaaaaacagcttggaatgatgttggctgtgaaccagccaggaacctgga
tttcattctgtgagcagaatgatactattgaagatactggtctgtggaag
cacatgataaaaataaggttttgctaagatttttcttgcacagaactcca
gatctagtgagagtagatctgtcacaagctatccatccatacagttagtg
taatattaagataagatttttatctaatttaacagcatctcaagtgcatg
gcccattagcaagcatctgcagctggtttggggacgactggaatgctttg
aactagggacaaagtagcttgcacaatttcttatttgtgatgttttaaat
tttgttaaagctttttttttaaaccgtgcatatgtatctgcttctaccaa
gaatgaacattaaatgccaattatcttctcatggattttttagcgtgtat
gtgtagctgtactaagtcttattctgcctttgaataaagggctctgcaag
ctcaacacatgggttaggattaacactggctgtccattatataaggcata
atcattatcaggtcatctagtgtctaactcctataagcaatgtataatgt
ggtgatagtaatatataaaaaaaggttcagtagttcatgtcactgtgat
attaacatgggagatcctttcataattctagtgtcttcctctatctcttt
atttaaagttttaaaaatttcatcatagaggtcttactttcacacctttc
tctagaatatttctggggctattacaaatgatattatttccctgatttct
ttcttggtatgctttaaattggtatgtagaatggctgtctatttttgtaa
gttaattttgtacctggtcactttgctcaaagtcttgatcattctgtttt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90441143_90442208
seq2: B6Ng01-014H14.b_41_1089 (reverse)

seq1  ATCACAGTGACCTGAAACTACTGATACTTTTTTTTTTATAATATTACTAT  50
      ||||||||||| || |||||||||  |||||||| |    ||||||||||
seq2  ATCACAGTGACATG-AACTACTGAACCTTTTTTTAT----ATATTACTAT  45

seq1  CACCACATTATTACCATTTGGCTAATAGGGAGTTAGACACTTAGATTGAA  100
      |||||||||||   ||||  ||| ||| |||||||||||| |||| ||| 
seq2  CACCACATTAT--ACATT--GCTTATA-GGAGTTAGACAC-TAGA-TGAC  88

seq1  CTGAATAATTGATATGCTTTTATTATATGGACAGCAAGTGTTAATCCTAA  150
      ||| |||||   |||||  ||||   ||||||||| ||||||||||||||
seq2  CTG-ATAATGATTATGC-CTTATATAATGGACAGCCAGTGTTAATCCTAA  136

seq1  CCCATGTGTTGAGCTTGCAGAGCCCTTTATTCAAAGGCAGAATAAGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGTTGAGCTTGCAGAGCCCTTTATTCAAAGGCAGAATAAGACTT  186

seq1  AGTAACAGCTACACATACACGCTAAAAAATCCATGAGAAGATATTTGGCA  250
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGT-ACAGCTACACATACACGCTAAAAAATCCATGAGAAGATAATTGGCA  235

seq1  TTTAATGTTCATTCTTGGTAGAAGCAGATACATATGCACGGTTTTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTAATGTTCATTCTTGGTAGAAGCAGATACATATGCACGG-TTTAAAAA  284

seq1  AAAAGCTTTAACAAAATTTAAAACATCACAAATAAGAAATTGTGCAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTAACAAAATTTAAAACATCACAAATAAGAAATTGTGCAAGCT  334

seq1  ACTTTGTCCCTAGTTCAAAGCATTCCAGTCGTCCCCAAACCAGCTGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCCCTAGTTCAAAGCATTCCAGTCGTCCCCAAACCAGCTGCAGA  384

seq1  TGCTTGCTAATGGGCCATGCACTTTGAGATGCTGTTAAATTAGATAAAAA  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCTTGCTAATGGGCCATGCAC-TTGAGATGCTGTTAAATTAGATAAAAA  433

seq1  TCTTATCTTAATATTACACTAACTGTATGGATGGATAGCTTGTGACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTTAATATTACACTAACTGTATGGATGGATAGCTTGTGACAGAT  483

seq1  CTACTCTCACTAGATCTGGAGTTCTGTGCAAGAAAAATCTTAGCAAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTCACTAGATCTGGAGTTCTGTGCAAGAAAAATCTTAGCAAAACC  533

seq1  TTATTTTTATCATGTGCTTCCACAGACCAGTATCTTCAATAGTATCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATCATGTGCTTCCACAGACCAGTATCTTCAATAGTATCATTC  583

seq1  TGCTCACAGAATGAAATCCAGGTTCCTGGCTGGTTCACAGCCAACATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAGAATGAAATCCAGGTTCCTGGCTGGTTCACAGCCAACATCAT  633

seq1  TCCAAGCTGTTTTTACCATTTTGGTCTTTTAAATAACTTCCTTCATTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTGTTTTTACCATTTTGGTCTTTTAAATAACTTCCTTCATTGCA  683

seq1  AAACCACCTACATTAAAAAGCTTATTTTTTTTCTTATTTTTTTTTTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACCTACATTAAAAAGCTTATTTTTTTTCTTATTTTTTTTTTTAGG  733

seq1  ACATGGCTTGTCAAAAGCAGCTGAGAATGTGGGACAATTGTGAGAACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTTGTCAAAAGCAGCTGAGAATGTGGGACAATTGTGAGAACTTC  783

seq1  AACTTTGTTCAAGATGTATTTGCATATATTCTCATTATATAAGCAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTTCAAGATGTATTTGCATATATTCTCATTATATAAGCAATAAT  833

seq1  ATGACCTAATTTGACTTGACATACATGCTATGATTGTAACTAGAGAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTAATTTGACTTGACATACATGCTATGATTGTAACTAGAGAAAAA  883

seq1  AATTTCATAGAACTATTTTACGCCCTTTTAATCATACATGATTTAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATAGAACTATTTTACGCCCTTTTAATCATACATGATTTAAAAAA  933

seq1  AAACCCCAAGAACAAATGCAGTGTAAAAGAGTGGCTTCAAATAAAGTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAAGAACAAATGCAGTGTAAAAGAGTGGCTTCAAATAAAGTATA  983

seq1  AATAGATATTTCATATGTACATTCAAAAGAAAGAAATCAAAACTACACCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATATTTCATATGTACATTCAAAAGAAAGAAATCAAAACTACACCT  1033

seq1  ATATTTTTCAGAATTC  1066
      ||||||||||||||||
seq2  ATATTTTTCAGAATTC  1049

seq1: chr10_6576320_6576439
seq2: B6Ng01-014H14.g_300_356 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  50
                                              ||||||||||
seq2  ----------------------------------------ACACACACAC  10

seq1  ATACACACACATACACACACATACACACCAGTGTTGGTAAATTACCACAA  100
      | ||||||||| |||||||||                        |||||
seq2  ACACACACACACACACACACA------------------------CACAA  36

seq1  AACAGAATGATCCA-ACTTTG  120
      |||||||||||| | ||||||
seq2  AACAGAATGATCAAGACTTTG  57