BAC Information

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BAC

Clone NameB6Ng01-014K16
Chromosome10 (Build37)
Map Location 75,988,836 - 76,144,766
singlet/doubletdoublet
Overlap geneLss, 1700027D21Rik, Ftcd, Col6a2
Upstream geneSnrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap
Downstream geneCol6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014K16.bB6Ng01-014K16.g
ACCDH849144DH849145
length1,032372
definitionDH849144|Mus musculus domesticus DNA, BAC clone: B6Ng01-014K16, 5' end.DH849145|Mus musculus domesticus DNA, BAC clone: B6Ng01-014K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,143,729 - 76,144,766)(75,988,836 - 75,989,207)
sequence
gaattccagatcttcctgtggtctaggggagagccaagaaaggctgtatt
ttgtgaagacaaatgaccctcaaagagaccccacatctgttgctctagca
ctagtatgggccaaccttgcacccccaaagatgaagtgctgggaactgtg
tctgaggttctccctgctgatggtggaagccggccacgcctcagaaacag
gaaccatctctctccctacccaagggtcctcactccctctaagcgagtca
gtttgtctgagccgctcacatagcctaggcctgagaaggggttcagtata
ggatataggacccagggaatgggaaacctacatctatagctacattgcct
gagcagttagaaggtgggggtggggtgtctctctgccatccccctcaagc
caagcacctgacctgctcaccctactctgcttctttcaggtgacacttgg
tgtcagtatggttgaccgaaacctcatactcgtgaactatctctgctgtc
aaaacaccacctcctcaggacctctttggggctcctgcctggacaggcgc
tgtgtgcatagtagaaatgcctgagataaggtcattggactgcctgctac
aggaagcgctatgaagatgtgccgtacctgggaccatcagctaggagtca
tagtactggcctgcagagctgggatgctttgcactacctggtgtgtcctg
caaaaggagacagaggcctggctcataccatggtctgcacatcatggttg
ctccagcctgggtctcagagaacattcccaggacaccagaaagagctagg
agcttaccctgtgcttggcagtacgttttctggagccacccacagatgag
gcccaagtttgatgtcccctccctcaagaagcaagagggaaaactgctta
gaaattagaatggctctggccagcccagagtcacaaggagatccctaaac
tgagccccttgcctttcaggccctcccctcacagaagctgacctctgctg
cctctaggactcatcccttccttggaactgtc
agttcaggctgactttgtttcctcatagcagctgaatctgttactgagtc
atgactttatttcactctggtgcaattttggctctccctgccttgtttta
ttctatgttcttgccactacttcactcaaaactctcagtacatccaacac
agccttgtttgtaaggtagagttctagttccgttttctcatgacaaccct
ttgggaaccatatctctctgtaacggcttttgcatccagaatgtctttat
ttctccttatatttgattcaatatttcagtgagagtaacattttagattg
gcaattattaccttttagtcttctttctttctttctttcttttttttttt
ttttttggttttttgagacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_76143729_76144766
seq2: B6Ng01-014K16.b_48_1079 (reverse)

seq1  GACATGTTCCAGAGAAGGGATGAGTCCTAGCAGGCAGCAGGAGGGTCAGC  50
      |||| ||||||  ||||||||||||||||| |||||||||   |||||||
seq2  GACA-GTTCCAAGGAAGGGATGAGTCCTAG-AGGCAGCAG--AGGTCAGC  46

seq1  TTCCTGTGAGGGGAGGGCCTGGAAAGGCAAGGGGCTCAGTTTAGGGGATC  100
      || ||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TT-CTGTGAGGGGAGGGCCT-GAAAGGCAAGGGGCTCAGTTTA-GGGATC  93

seq1  TCCCTGTGACTCTGGGCTGGCCAGAGCACTTCTAATTTTCTTAGCAGTTT  150
      ||| |||||||||||||||||||||||  |||||| ||||| ||||||||
seq2  TCCTTGTGACTCTGGGCTGGCCAGAGCCATTCTAA-TTTCTAAGCAGTTT  142

seq1  TCCCTCTTGCTTCCTGAGGATGGGGACATC-AACTTGGGCCTCATCTGTG  199
      ||||||||||||| |||||  ||||||||| |||||||||||||||||||
seq2  TCCCTCTTGCTTCTTGAGGGAGGGGACATCAAACTTGGGCCTCATCTGTG  192

seq1  GGTGGCTCCAG-AAACGTACTGCCAAGCACAGGGTAAGCTCCTAGCTCTT  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCCAGAAAACGTACTGCCAAGCACAGGGTAAGCTCCTAGCTCTT  242

seq1  TCTGGTGTCCTGGGAATGTTCTCTGAGACCCAGGCTGGAGCAACCATGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTCCTGGGAATGTTCTCTGAGACCCAGGCTGGAGCAACCATGAT  292

seq1  GTGCAGACCATGGTATGAGCCAGGCCTCTGTCTCCTTTTGCAGGACACAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGACCATGGTATGAGCCAGGCCTCTGTCTCCTTTTGCAGGACACAC  342

seq1  CAGGTAGTGCAAAGCATCCCAGCTCTGCAGGCCAGTACTATGACTCCTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGTGCAAAGCATCCCAGCTCTGCAGGCCAGTACTATGACTCCTAG  392

seq1  CTGATGGTCCCAGGTACGGCACATCTTCATAGCGCTTCCTGTAGCAGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTCCCAGGTACGGCACATCTTCATAGCGCTTCCTGTAGCAGGCA  442

seq1  GTCCAATGACCTTATCTCAGGCATTTCTACTATGCACACAGCGCCTGTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATGACCTTATCTCAGGCATTTCTACTATGCACACAGCGCCTGTCC  492

seq1  AGGCAGGAGCCCCAAAGAGGTCCTGAGGAGGTGGTGTTTTGACAGCAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGCCCCAAAGAGGTCCTGAGGAGGTGGTGTTTTGACAGCAGAG  542

seq1  ATAGTTCACGAGTATGAGGTTTCGGTCAACCATACTGACACCAAGTGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCACGAGTATGAGGTTTCGGTCAACCATACTGACACCAAGTGTCA  592

seq1  CCTGAAAGAAGCAGAGTAGGGTGAGCAGGTCAGGTGCTTGGCTTGAGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGAAGCAGAGTAGGGTGAGCAGGTCAGGTGCTTGGCTTGAGGGG  642

seq1  GATGGCAGAGAGACACCCCACCCCCACCTTCTAACTGCTCAGGCAATGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGAGAGACACCCCACCCCCACCTTCTAACTGCTCAGGCAATGTA  692

seq1  GCTATAGATGTAGGTTTCCCATTCCCTGGGTCCTATATCCTATACTGAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGATGTAGGTTTCCCATTCCCTGGGTCCTATATCCTATACTGAAC  742

seq1  CCCTTCTCAGGCCTAGGCTATGTGAGCGGCTCAGACAAACTGACTCGCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCAGGCCTAGGCTATGTGAGCGGCTCAGACAAACTGACTCGCTT  792

seq1  AGAGGGAGTGAGGACCCTTGGGTAGGGAGAGAGATGGTTCCTGTTTCTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGTGAGGACCCTTGGGTAGGGAGAGAGATGGTTCCTGTTTCTGA  842

seq1  GGCGTGGCCGGCTTCCACCATCAGCAGGGAGAACCTCAGACACAGTTCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGCCGGCTTCCACCATCAGCAGGGAGAACCTCAGACACAGTTCCC  892

seq1  AGCACTTCATCTTTGGGGGTGCAAGGTTGGCCCATACTAGTGCTAGAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCATCTTTGGGGGTGCAAGGTTGGCCCATACTAGTGCTAGAGCA  942

seq1  ACAGATGTGGGGTCTCTTTGAGGGTCATTTGTCTTCACAAAATACAGCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTGGGGTCTCTTTGAGGGTCATTTGTCTTCACAAAATACAGCCT  992

seq1  TTCTTGGCTCTCCCCTAGACCACAGGAAGATCTGGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCTCTCCCCTAGACCACAGGAAGATCTGGAATTC  1032

seq1: chr10_75988836_75989207
seq2: B6Ng01-014K16.g_76_447

seq1  AGTTCAGGCTGACTTTGTTTCCTCATAGCAGCTGAATCTGTTACTGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGGCTGACTTTGTTTCCTCATAGCAGCTGAATCTGTTACTGAGTC  50

seq1  ATGACTTTATTTCACTCTGGTGCAATTTTGGCTCTCCCTGCCTTGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTATTTCACTCTGGTGCAATTTTGGCTCTCCCTGCCTTGTTTTA  100

seq1  TTCTATGTTCTTGCCACTACTTCACTCAAAACTCTCAGTACATCCAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTTCTTGCCACTACTTCACTCAAAACTCTCAGTACATCCAACAC  150

seq1  AGCCTTGTTTGTAAGGTAGAGTTCTAGTTCCGTTTTCTCATGACAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTTTGTAAGGTAGAGTTCTAGTTCCGTTTTCTCATGACAACCCT  200

seq1  TTGGGAACCATATCTCTCTGTAACGGCTTTTGCATCCAGAATGTCTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACCATATCTCTCTGTAACGGCTTTTGCATCCAGAATGTCTTTAT  250

seq1  TTCTCCTTATATTTGATTCAATATTTCAGTGAGAGTAACATTTTAGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTATATTTGATTCAATATTTCAGTGAGAGTAACATTTTAGATTG  300

seq1  GCAATTATTACCTTTTAGTCTTCTTTCTTTCTTTCTTTCTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATTACCTTTTAGTCTTCTTTCTTTCTTTCTTTCTTTTTTTTTTT  350

seq1  TTTTTTGGTTTTTTGAGACAGG  372
      ||||||||||||||||||||||
seq2  TTTTTTGGTTTTTTGAGACAGG  372