BAC Information

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BAC

Clone NameB6Ng01-015B01
Chromosome14 (Build37)10 (Build37)
Map Location 89,750,100 - 89,750,896104,053,576 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015B01.bB6Ng01-015B01.g
ACCDH849429DH849430
length8021,029
definitionDH849429|Mus musculus domesticus DNA, BAC clone: B6Ng01-015B01, 5' end.DH849430|Mus musculus domesticus DNA, BAC clone: B6Ng01-015B01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,750,100 - 89,750,896)(104,053,576 - 104,054,363)
sequence
gaattctactcacacaattcaatggtttaatttactgaaatatatgcata
tctctacagtataaaatgtagttaaatgtattataaaatgatgcagtcag
tagaaaaatgacttactgaactctattatcctaagagtaaagtagtaatt
agactaggtcattctttttacatggccagaaaccatgctgtgctatagtt
acatattgttttattcactgttactagagctttggcgtcacacacactct
gtcacattacaactctctttaattcgttttttcacatcccagacaaaagg
aaatatgattagaatcaatctttattcctatagtatcatttatgcttttc
gttataacttgaacattactcttactttgaagacttttaatgcgttgcag
cccatgtgttattatcaaactaacttatgtcaacaacatgttctcgccat
gtagtcgtgaaaagaaatctcagagttttataatttttgcattgtttggt
aaggacacagggatctattactggtaagcaacttgacagtctcaagttct
ctgaaaaattttgatggagataaacttgaaacaatgggtcatcttttttg
ttccttttgtttctttcaacattgaaatccactaagctatttctagcccc
agattcttcaactggggataatcaaaatgagtttaaatgaaaccctgtca
agcaaatatcacattatgaataataacatgtttctcgaaagttatatcta
aatggaaagaaggatcctgaaagctaagcgaattagaggtcatagctcaa
tg
gaattctcccctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggctgttcctca
ggaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggaattacagagacaaagtttggagctgagatga
aaggatggtccatgtagatacttccatatccagggattcaccccataatc
agcatccaaacgctgacaccatggcatacactagcaatatttttatcgaa
aggacccagatgtagctgtctcttgtgcagtcttttttataataatgaga
agcatgaaagagcccagtctcagcggtatacttctttccaacaggacata
cctcctaatcactccaaagaagttctatatcctgcagaccaagtattgca
cctatctgcctttgggagccattctgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89750100_89750896
seq2: B6Ng01-015B01.b_43_844

seq1  GAATTCTACTCACACAATTCAATGGTTTAATTTACTGAAATATATGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTCACACAATTCAATGGTTTAATTTACTGAAATATATGCATA  50

seq1  TCTCTACAGTATAAAATGTAGTTAAATGTATTATAAAATGATGCAGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACAGTATAAAATGTAGTTAAATGTATTATAAAATGATGCAGTCAG  100

seq1  TAGAAAAATGACTTACTGAACTCTATTATCCTAAGAGTAAAGTAGTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATGACTTACTGAACTCTATTATCCTAAGAGTAAAGTAGTAATT  150

seq1  AGACTAGGTCATTCTTTTTACATGGCCAGAAACCATGCTGTGCTATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGGTCATTCTTTTTACATGGCCAGAAACCATGCTGTGCTATAGTT  200

seq1  ACATATTGTTTTATTCACTGTTACTAGAGCTTTGGCGTCACACACACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGTTTTATTCACTGTTACTAGAGCTTTGGCGTCACACACACTCT  250

seq1  GTCACATTACAACTCTCTTTAATTCGTTTTTTCACATCCCAGACAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTACAACTCTCTTTAATTCGTTTTTTCACATCCCAGACAAAAGG  300

seq1  AAATATGATTAGAATCAATCTTTATTCCTATAGTATCATTTATGCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGATTAGAATCAATCTTTATTCCTATAGTATCATTTATGCTTTTC  350

seq1  GTTATAACTTGAACATTACTCTTACTTTGAAGACTTTTAATGCGTTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAACTTGAACATTACTCTTACTTTGAAGACTTTTAATGCGTTGCAG  400

seq1  CCCATGTGTTATTATCAAACTAACTTATGTCAACAACATGTTCTCGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGTTATTATCAAACTAACTTATGTCAACAACATGTTCTCGCCAT  450

seq1  GTAGTCGTGAAAAGAAATCTCAGAGTTTTATAATTTTTGCATTGTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCGTGAAAAGAAATCTCAGAGTTTTATAATTTTTGCATTGTTTGGT  500

seq1  AAGGACACAGGGATCTATTACTGGTAAGCAACTTGACAGTCTCAAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACACAGGGATCTATTACTGGTAAGCAACTTGACAGTCTCAAGTTCT  550

seq1  CTGAAAAATTTTGATGGAGATAAACTTGAAACAATGGGTCATC-TTTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGAAAAATTTTGATGGAGATAAACTTGAAACAATGGGTCATCTTTTTTG  600

seq1  TTCC-TTTGTTTCTTTCAACATTGAAATCCACTAAGCTATTTCTAGCCCC  648
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTGTTTCTTTCAACATTGAAATCCACTAAGCTATTTCTAGCCCC  650

seq1  AGATTCTTCAACT-GGGATAATCAAAATGAGTTT-AATGAAACCCTGTCA  696
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  AGATTCTTCAACTGGGGATAATCAAAATGAGTTTAAATGAAACCCTGTCA  700

seq1  AGCAAATATCACATTATGAATAATAACATGTATCTCGAAGGTTATATCT-  745
      ||||||||||||||||||||||||||||||| ||||||| ||||||||| 
seq2  AGCAAATATCACATTATGAATAATAACATGTTTCTCGAAAGTTATATCTA  750

seq1  AATGGAAAGAAGGATCCTGAAAGCTAAGCGAATTAGAGGTCATAGCTCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAGAAGGATCCTGAAAGCTAAGCGAATTAGAGGTCATAGCTCAA  800

seq1  TG  797
      ||
seq2  TG  802

seq1: chr10_104053576_104054363
seq2: B6Ng01-015B01.g_67_642 (reverse)

seq1  CAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGTTACCGCACTCA  50
      |||||||||||||||| | |||||||||||||| || |||||| ||||||
seq2  CAGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCA  50

seq1  GGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCA  100
      ||||||| | ||||||||||||||||||| ||||||||||||||||||||
seq2  GGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCA  100

seq1  TTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAATGTAATTACAAT  150
      ||||||||||||||                                    
seq2  TTCTTTTTAATAGC------------------------------------  114

seq1  TAATTAATTTATTAATTAAATAATTTAATAATTTAATTGATAAATTAATT  200
                                                        
seq2  --------------------------------------------------  114

seq1  TAATTAATTAATTTAATTAATTAAATTAAATAATAATTTAATAATAAATT  250
                                                        
seq2  --------------------------------------------------  114

seq1  AAATATTTTAAAATTAATAATAATTTTATAAGTAAATAATTTAATTAATG  300
                                  | ||||                
seq2  ----------------------------TGAGTA----------------  120

seq1  TAATTTAATTAATGTAATTACATTACATTTAATAGCTCCATTGTGTAAAT  350
                   |||                   |||||||||||| ||
seq2  -------------GTA-------------------CTCCATTGTGTAGAT  138

seq1  GTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTT  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTT  188

seq1  TCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCAT  450
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCAT  238

seq1  GTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGG  500
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  GTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCAGGAGAGG  288

seq1  TATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCC  550
      |||||||||||||||||||||||||||||||||||| |||| |||| |||
seq2  TATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTCCTGAGGAACAGCC  338

seq1  AGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGG  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGG  388

seq1  AGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGA  650
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCTGA  438

seq1  ATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTG  488

seq1  TTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGG  538

seq1  TGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  788
      ||||||||||||||||||||||||||||| ||||||||
seq2  TGCTTCTCTGCCATTCGGTATTCCTCAGGGGAGAATTC  576