BAC Information

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BAC

Clone NameB6Ng01-015E18
Chromosome10 (Build37)
Map Location 84,600,796 - 84,740,983
singlet/doubletdoublet
Overlap geneCry1
Upstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3
Downstream geneEG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015E18.bB6Ng01-015E18.g
ACCDH849597DH849598
length5641,058
definitionDH849597|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E18, 5' end.DH849598|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,600,796 - 84,601,365)(84,739,927 - 84,740,983)
sequence
tcaaagacaaaaagattcaggaggaactgcactggaagttcagtaaggac
tacgttagctggaactatacaaggcactcttcctcttttacatttttctg
tgttttctaaattacactgaaaattattattttattgtttcctcctaaaa
tgaatcacttatgcctactgttcattacaggttcatgtgcagtattggaa
aggagcttatgacaggccttctaacacactgtcatttgaatagctatggt
ggttaacactatcaatgtgacaatctctgggcatgcctgtgggtagcatc
ttaccatgggctgggatcccaattgaataaaagaatacagtgagctgagc
agtaacattcgccactgcttctccactgtggatatcatgtgaccagctgc
cttcagtttccgccatcgtcacttccttgccatggcagagtctatccttg
atagtgagctcacgtaacccctctctccctcacacaatgcgatggctgag
aatgtgccataagcttccagttgttgtttttacattaagaacaattttga
gatgtgtgtgtgtg
gaattcattccacccagggttctaggtggttatggggaagaggtaccaga
ccttctactgagtccaacgctgatagacctggtgacgaaacctagcaaga
accttctggatctttcttggtttctctgtgcatcattccttccttcctta
ttagcacagagcaggacctttctgtaatagaaaagttgttagagaatgcc
ttctatttttaatcgtttgattaattaaacttatttaatttctctcaata
caaaacacttagtaactacctctactccccaccttcccactaccccgtca
gcactcctcctacccacaattctctctcacatgtttgactgctttgttct
gtgacccactgagatgaaccaaggttgcctgtgtgataatgactttagag
ttatccattagagcctaataggattggcagttttcaagcaactaaagaca
gtggttccctgtttcactgactctatctttggccaaaagttcagaggtaa
agggtaagactccatgagcccctcccctctcttgttgataggaatggtct
ggtgtgagctcaatgcaggtaatgaaagtcattgtgaattactaattgag
ataattatatcaagtctaaagaagacagtctcaggttgtccttaggtaaa
gttcacctcctttgaaacaaggtctctcactggcctggagctcatcagtt
aagctagactggctgactagcaagccctagaggcaccccccccccccatc
tttccctgaaattacaagcatgttgcctaacatctttatgtagattcttg
gagtccaccttaagacttcatgcttgcaaggcaagttgcttgcagtatct
gagctaatatccctggccacagagtgttttctatggctagttcctctcaa
aaagagcaaaaaagattgagcatattttattttctgtgatcagtcttgag
gacagaaattctgcttctttgtactgccttggggaagaaaagaaacatgg
gaaagaaaaatgggtcaagagaagaaattctcccaaagcttgctcctgag
agtctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_84600796_84601365
seq2: B6Ng01-015E18.b_43_612

seq1  GAATTCTCAAAGACAAAAAGATTCAGGAGGAACTGCACTGGAAGTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAGACAAAAAGATTCAGGAGGAACTGCACTGGAAGTTCAGT  50

seq1  AAGGACTACGTTAGCTGGAACTATACAAGGCACTCTTCCTCTTTTACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTACGTTAGCTGGAACTATACAAGGCACTCTTCCTCTTTTACATT  100

seq1  TTTCTGTGTTTTCTAAATTACACTGAAAATTATTATTTTATTGTTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTTTTCTAAATTACACTGAAAATTATTATTTTATTGTTTCCTC  150

seq1  CTAAAATGAATCACTTATGCCTACTGTTCATTACAGGTTCATGTGCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGAATCACTTATGCCTACTGTTCATTACAGGTTCATGTGCAGTA  200

seq1  TTGGAAAGGAGCTTATGACAGGCCTTCTAACACACTGTCATTTGAATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGGAGCTTATGACAGGCCTTCTAACACACTGTCATTTGAATAGC  250

seq1  TATGGTGGTTAACACTATCAATGTGACAATCTCTGGGCATGCCTGTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGTTAACACTATCAATGTGACAATCTCTGGGCATGCCTGTGGGT  300

seq1  AGCATCTTACCATGGGCTGGGATCCCAATTGAATAAAAGAATACAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTACCATGGGCTGGGATCCCAATTGAATAAAAGAATACAGTGAG  350

seq1  CTGAGCAGTAACATTCGCCACTGCTTCTCCACTGTGGATATCATGTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGTAACATTCGCCACTGCTTCTCCACTGTGGATATCATGTGACC  400

seq1  AGCTGCCTTCAGTTTCCGCCATCGTCACTTCCTTGCCATGGCAGAGTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTTCAGTTTCCGCCATCGTCACTTCCTTGCCATGGCAGAGTCTA  450

seq1  TCCTTGATAGTGAGCTCACGTAACCCCTCTCTCCCTCACACAATGCGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATAGTGAGCTCACGTAACCCCTCTCTCCCTCACACAATGCGATG  500

seq1  GCTGAGAATGTGCCATAAGCTTCCAGTTGTTGTTTTTACATTAAGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAATGTGCCATAAGCTTCCAGTTGTTGTTTTTACATTAAGAACAA  550

seq1  TTTTGAGATGTGTGTGTGTG  570
      ||||||||||||||||||||
seq2  TTTTGAGATGTGTGTGTGTG  570

seq1: chr10_84739927_84740983
seq2: B6Ng01-015E18.g_69_1126 (reverse)

seq1  TTGAG-CTCTCAGAAGCCAGCTTTGGGAGCACTGTCTCTCTGTGACCCAC  49
      ||||| ||||||| ||| ||||||||||| | |   ||||| ||||||| 
seq2  TTGAGACTCTCAGGAGCAAGCTTTGGGAGAATTTCTTCTCT-TGACCCAT  49

seq1  TTTTCTTTCCCATGTTTCTTTTCTTCCCCAAGGCAGTACATAGAAGCCAG  99
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  TTTTCTTTCCCATGTTTCTTTTCTTCCCCAAGGCAGTACAAAGAAG-CAG  98

seq1  AATTTCTTGTCCTCAAGACTGATCACAGAAACTAAAATATGCTCACTCTT  149
      |||||| |||||||||||||||||||||||| ||||||||||||| ||||
seq2  AATTTC-TGTCCTCAAGACTGATCACAGAAAATAAAATATGCTCAATCTT  147

seq1  TTTTGCTCTTTTTGAGAGGAACTAGCCATAGAAAACACTCTGTGGCCAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCTTTTTGAGAGGAACTAGCCATAGAAAACACTCTGTGGCCAGG  197

seq1  GATA-TAGCTCAGATACTGC-AGC-ACTTGCCTTGCAAGCATGAAGTCTT  246
      |||| ||||||||||||||| ||| |||||||||||||||||||||||||
seq2  GATATTAGCTCAGATACTGCAAGCAACTTGCCTTGCAAGCATGAAGTCTT  247

seq1  AAGGTGGACTCCAAGAATCTACATAAAGATGTTAGGCAACATGCTTGTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGACTCCAAGAATCTACATAAAGATGTTAGGCAACATGCTTGTAA  297

seq1  TTCCAGGGAAAGATGGGGGGGGGGGGTGCCTCTAGGGCTTGCTAGTCAGC  346
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGAAAGATGGGGGGGGGGGGTGCCTCTAGGGCTTGCTAGTCAGC  347

seq1  CAGTCTAGCTTAACTGATGAGCTCCAGGCCAGTGAGAGACCTTGTTTCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAGCTTAACTGATGAGCTCCAGGCCAGTGAGAGACCTTGTTTCAA  397

seq1  AGGAGGTGAACTTTACCTAAGGACAACCTGAGACTGTCTTCTTTAGACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGAACTTTACCTAAGGACAACCTGAGACTGTCTTCTTTAGACTT  447

seq1  GATATAATTATCTCAATTAGTAATTCACAATGACTTTCATTACCTGCATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATTATCTCAATTAGTAATTCACAATGACTTTCATTACCTGCATT  497

seq1  GAGCTCACACCAGACCATTCCTATCAACAAGAGAGGGGAGGGGCTCATGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACACCAGACCATTCCTATCAACAAGAGAGGGGAGGGGCTCATGG  547

seq1  AGTCTTACCCTTTACCTCTGAACTTTTGGCCAAAGATAGAGTCAGTGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTACCCTTTACCTCTGAACTTTTGGCCAAAGATAGAGTCAGTGAAA  597

seq1  CAGGGAACCACTGTCTTTAGTTGCTTGAAAACTGCCAATCCTATTAGGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACCACTGTCTTTAGTTGCTTGAAAACTGCCAATCCTATTAGGCT  647

seq1  CTAATGGATAACTCTAAAGTCATTATCACACAGGCAACCTTGGTTCATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGATAACTCTAAAGTCATTATCACACAGGCAACCTTGGTTCATCT  697

seq1  CAGTGGGTCACAGAACAAAGCAGTCAAACATGTGAGAGAGAATTGTGGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTCACAGAACAAAGCAGTCAAACATGTGAGAGAGAATTGTGGGT  747

seq1  AGGAGGAGTGCTGACGGGGTAGTGGGAAGGTGGGGAGTAGAGGTAGTTAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGTGCTGACGGGGTAGTGGGAAGGTGGGGAGTAGAGGTAGTTAC  797

seq1  TAAGTGTTTTGTATTGAGAGAAATTAAATAAGTTTAATTAATCAAACGAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTTTGTATTGAGAGAAATTAAATAAGTTTAATTAATCAAACGAT  847

seq1  TAAAAATAGAAGGCATTCTCTAACAACTTTTCTATTACAGAAAGGTCCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGAAGGCATTCTCTAACAACTTTTCTATTACAGAAAGGTCCTG  897

seq1  CTCTGTGCTAATAAGGAAGGAAGGAATGATGCACAGAGAAACCAAGAAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCTAATAAGGAAGGAAGGAATGATGCACAGAGAAACCAAGAAAG  947

seq1  ATCCAGAAGGTTCTTGCTAGGTTTCGTCACCAGGTCTATCAGCGTTGGAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAAGGTTCTTGCTAGGTTTCGTCACCAGGTCTATCAGCGTTGGAC  997

seq1  TCAGTAGAAGGTCTGGTACCTCTTCCCCATAACCACCTAGAACCCTGGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAAGGTCTGGTACCTCTTCCCCATAACCACCTAGAACCCTGGGT  1047

seq1  GGAATGAATTC  1057
      |||||||||||
seq2  GGAATGAATTC  1058