BAC Information

Click to search

BAC

Clone NameB6Ng01-015M05
Chromosome10 (Build37)
Map Location 20,020,690 - 20,170,181
singlet/doubletdoublet
Overlap geneBclaf1, 2610016C23Rik, LOC382344, Pde7b
Upstream geneOlig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697
Downstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015M05.bB6Ng01-015M05.g
ACCDH849933DH849934
length1,080413
definitionDH849933|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M05, 5' end.DH849934|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,020,690 - 20,021,773)(20,169,763 - 20,170,181)
sequence
gaattctttcagcagcagaggaatctctggtgtcactcctcctccatcct
tcttccttctctccatcttcttcccagaagaatgcctgtggatgttaaag
gacatctttactttgtggatgcaaggatgctgggaaggcttagtaagtga
cccctgcaggactcctatcctatttaccaacaagagcctgacattccaat
ttaatttcatgtttttagcccaaggcatggtgacattgaaaaaaagtagt
tgtgaattactttgtggttagcatgttatttttaataacgtcctgtaact
aggtatgtcatggtattctttctgtgggggtggagaccactatgaattta
tttaactaacccatttctctcatctggaatctctgggaacatgagttgac
ttggttagtttgggctgctagaaaaacttgtatatagtgccttcctttca
aacaggatgctcccagtgctcagttctggagcctggatatctgagaacgg
ggttccagtggggctcccttctgagttgtagactgcgactttcttgtgcc
cacataagaaaagaagtcactagctctctggactttccttgtaaagacat
gagttctactcatgagtgtgcctttctcaagagataatcactatcctgga
gtagcaactggaaatagcattacattaccatgggaattccatagatattc
tgggggacacaagtcttccgtagattgcagtaatctttcttgctttgttc
ttggctgttgtgttttctctactacctgcagcaccatgcctgttacacaa
caaacttcagcaaatgcttattgaatacacagattcataaacagcaacga
ctctggtcctttctaagtaacttcaagaatgtttaagattctatgttcta
agacacaaaaaacatttgattgtcgatttctgatctgggttctgatttca
aatctttagtcctagatgttttatttatttgaatgaaaagtcaacaaacc
ttttgttctgttcgatggactctaatttcaaggaactttaaaaatccgtt
ttatagccagctgtagttacacacctttaa
atctgtgatatcaggcggtgtatgtccactactcatggctgtcttgtcta
cttgtaattccaatatataaataaatgcatattagaggtgacaaagaaat
tttcctatagggctttagaacaggagaatgtttacagaatatgaaaaggg
ggtgggttgttgtgtgcctgtttccttttagatttggtttatataaaatg
gaggaaaattgatttcctttatttattgaaagaattgactcaattctcta
tagaaatataatcatattcctcattcttgcacagtaaaactctctaagga
gttgtccatcctgacatagtcccagacacatttcttcctgttttctctcc
tgtatatatgtacatgtgtgtatgtgtgtttatatatgtacgtatgtgta
tgtgtgtgtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_20020690_20021773
seq2: B6Ng01-015M05.b_46_1125

seq1  GAATTCTTTCAGCAGCAGAGGAATCTCTGGTGTCACTCCTCCTCCATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGCAGCAGAGGAATCTCTGGTGTCACTCCTCCTCCATCCT  50

seq1  TCTTCCTTCTCTCCATCTTCTTCCCAGAAGAATGCCTGTGGATGTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTCTCCATCTTCTTCCCAGAAGAATGCCTGTGGATGTTAAAG  100

seq1  GACATCTTTACTTTGTGGATGCAAGGATGCTGGGAAGGCTTAGTAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTTACTTTGTGGATGCAAGGATGCTGGGAAGGCTTAGTAAGTGA  150

seq1  CCCCTGCAGGACTCCTATCCTATTTACCAACAAGAGCCTGACATTCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCAGGACTCCTATCCTATTTACCAACAAGAGCCTGACATTCCAAT  200

seq1  TTAATTTCATGTTTTTAGCCCAAGGCATGGTGACATTGAAAAAAAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCATGTTTTTAGCCCAAGGCATGGTGACATTGAAAAAAAGTAGT  250

seq1  TGTGAATTACTTTGTGGTTAGCATGTTATTTTTAATAACGTCCTGTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTACTTTGTGGTTAGCATGTTATTTTTAATAACGTCCTGTAACT  300

seq1  AGGTATGTCATGGTATTCTTTCTGTGGGGGTGGAGACCACTATGAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTCATGGTATTCTTTCTGTGGGGGTGGAGACCACTATGAATTTA  350

seq1  TTTAACTAACCCATTTCTCTCATCTGGAATCTCTGGGAACATGAGTTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTAACCCATTTCTCTCATCTGGAATCTCTGGGAACATGAGTTGAC  400

seq1  TTGGTTAGTTTGGGCTGCTAGAAAAACTTGTATATAGTGCCTTCCTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGTTTGGGCTGCTAGAAAAACTTGTATATAGTGCCTTCCTTTCA  450

seq1  AACAGGATGCTCCCAGTGCTCAGTTCTGGAGCCTGGATATCTGAGAACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATGCTCCCAGTGCTCAGTTCTGGAGCCTGGATATCTGAGAACGG  500

seq1  GGTTCCAGTGGGGCTCCCTTCTGAGTTGTAGACTGCGACTTTCTTGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGTGGGGCTCCCTTCTGAGTTGTAGACTGCGACTTTCTTGTGCC  550

seq1  CACATAAGAAAAGAAGTCACTAGCTCTCTGGACTTTCCTTGTAAAGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAGAAAAGAAGTCACTAGCTCTCTGGACTTTCCTTGTAAAGACAT  600

seq1  GAGTTCTACTCATGAGTGTGCCTTTCTCAAGAGATAATCACTATCCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTACTCATGAGTGTGCCTTTCTCAAGAGATAATCACTATCCTGGA  650

seq1  GTAGCAACTGGAAATAGCATTACATTACCATGGGAATTCCATAGATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAGCAACTGGAAATAGCATTACATTACCATGGGAATTCCATAGATA-TT  699

seq1  CTGGGGGACACAAGTCTTCCGTAGATTGCAGTAATCTTTCTTGCTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGACACAAGTCTTCCGTAGATTGCAGTAATCTTTCTTGCTTTGTT  749

seq1  CTTGGCTGTTGTGTTTTCTCTACTACCTGCAGCACCATGCCTGTTACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGTTGTGTTTTCTCTACTACCTGCAGCACCATGCCTGTTACACA  799

seq1  ACAAACTTCAGCAAATGCTTATTGAATACACAGATTCATAAACAGCAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTCAGCAAATGCTTATTGAATACACAGATTCATAAACAGCAACG  849

seq1  ACTCTGGTCCTTTCTAAGTAACTTCAAGAATGTTTAAGATTCTATGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTCCTTTCTAAGTAACTTCAAGAATGTTTAAGATTCTATGTTCT  899

seq1  AAGACACAAAAAAACATTTGATGTCCGATTTTCTGATCTGGGTTCTGAAT  950
      ||||||| ||||||||||||||   ||| |||||||||||||||||| ||
seq2  AAGACAC-AAAAAACATTTGATTGTCGA-TTTCTGATCTGGGTTCTG-AT  946

seq1  TTCAAATCTTTAGTCTCTAGATGTTTTATTTATTTGAATGAAAAGTC-AC  999
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  TTCAAATCTTTAGTC-CTAGATGTTTTATTTATTTGAATGAAAAGTCAAC  995

seq1  AAAACCTTTGTTCTGTTCGATGGACTCTAATTTCCAAAGGAACTTTAAAA  1049
      ||| | ||||||||||||||||||||||||||||  ||||||||||||||
seq2  AAACCTTTTGTTCTGTTCGATGGACTCTAATTTC--AAGGAACTTTAAAA  1043

seq1  ATCC-TTTTATAGCCAGCTGTAG-TACACACCTTTAA  1084
      |||| |||||||||||||||||| |||||||||||||
seq2  ATCCGTTTTATAGCCAGCTGTAGTTACACACCTTTAA  1080

seq1: chr10_20169763_20170181
seq2: B6Ng01-015M05.g_67_485 (reverse)

seq1  ATATACACACACATACACATACGTACATATATAAACACACATACACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACACACATACACATACGTACATATATAAACACACATACACACAT  50

seq1  GTACATATATACAGGAGAGAAAACAGGAAGAAATGTGTCTGGGACTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATATACAGGAGAGAAAACAGGAAGAAATGTGTCTGGGACTATGT  100

seq1  CAGGATGGACAACTCCTTAGAGAGTTTTACTGTGCAAGAATGAGGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGACAACTCCTTAGAGAGTTTTACTGTGCAAGAATGAGGAATAT  150

seq1  GATTATATTTCTATAGAGAATTGAGTCAATTCTTTCAATAAATAAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATTTCTATAGAGAATTGAGTCAATTCTTTCAATAAATAAAGGAA  200

seq1  ATCAATTTTCCTCCATTTTATATAAACCAAATCTAAAAGGAAACAGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTCCTCCATTTTATATAAACCAAATCTAAAAGGAAACAGGCAC  250

seq1  ACAACAACCCACCCCCTTTTCATATTCTGTAAACATTCTCCTGTTCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACCCACCCCCTTTTCATATTCTGTAAACATTCTCCTGTTCTAAA  300

seq1  GCCCTATAGGAAAATTTCTTTGTCACCTCTAATATGCATTTATTTATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATAGGAAAATTTCTTTGTCACCTCTAATATGCATTTATTTATATA  350

seq1  TTGGAATTACAAGTAGACAAGACAGCCATGAGTAGTGGACATACACCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTACAAGTAGACAAGACAGCCATGAGTAGTGGACATACACCGCC  400

seq1  TGATATCACAGATGAATTC  419
      |||||||||||||||||||
seq2  TGATATCACAGATGAATTC  419