BAC Information

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BAC

Clone NameB6Ng01-016B21
Chromosome10 (Build37)
Map Location 88,131,388 - 88,249,806
singlet/doubletdoublet
Overlap geneLOC100042998, EG435236, Spic, EG237433, Arl1, Utp20
Upstream geneLOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414
Downstream geneSlc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016B21.bB6Ng01-016B21.g
ACCDH850187DH850188
length1,201912
definitionDH850187|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B21, 5' end.DH850188|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,131,388 - 88,132,606)(88,248,895 - 88,249,806)
sequence
gaattctacattttcatttgaagactgctagaagaatactggtctccagg
cagctaggataagggtctcaaaatccacacccacagcgccacgcctactt
caaaaaggtcacacctacttgaacagggccacaccttctagtagtgccac
tccctgggccaagcatatacaaaccatcacaccatctcaacaataacaac
agaggatattgaggaaagacaataaacatggccagccaagggctcagtcc
tctcccaggcaggaatctcaccattcctacatttagacagatgctacact
caagggactagagcttatttgtggctcttgtcttttccaaattagactct
atatcgtggtccatcacagggcagtcatgagcaaatgcagcaatgaacaa
aggagaccaatgatcgttccggaactcccggtgattggatatagtagctc
agtgggagtttcaagtgctgccccttgggttgtgtgactaacttccacat
aagcatgaacagttttgaaatgcatgtgaatatatcagacagacaaaggc
tggaccatggtgttctgattcctccctgacatctgcactttctcctttcg
ggcaatatctgttttaagcaggtgttctttcctgctcctttctgggagag
tgacctttcccttcttcagaaggagttcctatcgtgtttgtactctgagg
cttgagatattctaggagattctggaaactgttcttatggtcacatgggc
acaaacacacatacacacacacacacacacacacacacacaccttaggtg
cactgtaacaatgattctcaatctttgggtcatgacccttgcagtcacat
atcagatatcctgcatatctaatgtctacatttcaatccataacagtgat
gaagtagcaaggacataattttatggttggggtcatcacaactgtattaa
agggttgaagcattaggagagtgaagaccactgctctataaccctatctg
aagatggttcaggcaggttagaaaaacatcccttctttgtgataaccaca
gatgaattatgaagccaatggtggtagagtacatcattcttcaagggttt
ctttaggacaatgttgaaaataagtcaagctttctttcgattgccaaatc
agatcctcctcaatatgtgctgatcctgcccttatcagctgagagaataa
a
gaattctcatgacgtaattgtccccagtttacaaatgagaacactggtag
aggtaggatttttaactcagacatttctgactataaaatcctttgttcga
gttccaaaatttattggctttagcctaatataaatatttctttggtagtg
taatgcgttttgtttcagctcagtgaatagcagagtgaccctcatgagta
ccagcattttgttgggtgggtggcccccggatggaaggtgtacaaatgat
acagtttaagaggtctggttaagttgtacatcagtaatttattgtcttat
tgtaggtggctgtgcaaagcctaagcagtatcaattcagatcttttaagt
ttttataactcgtcaaactcagcatagctcagtaactccagtgttcagga
atagtattttttaaaattgggtgagccaggtgtgatggtgcataccatta
attccaacacttgggagagagagggaggtggatctctgataggtcacaga
cagcctggtttatataatgagtatcaggacagccagagctacatagtaga
aaaaccctgtctcaagaaagaaaataacagtagtaaataaaataaaactg
ggtgggatttacactcagagtcagctctcagactactttcttatctttct
ttgtccctcagtttccctatctgaaatacgaacagtaaaacagctccctg
agcatctgataagagttgggagacagtacctgagagaagaatgctggcac
ctgtaactaacacatcactagagaaactgtgctgtttagggagctggggg
aggatgccgtgatcagcagcagactaacatttcacctcatggcacatcct
ctccatttcactaggagactgctgttctgctggcatccaggcatagagga
tttagatgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88131388_88132606
seq2: B6Ng01-016B21.b_32_1232

seq1  GAATTCTACATTTTCATTTGAAGACTGCTAGAAGAATACTGGTCTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTTTCATTTGAAGACTGCTAGAAGAATACTGGTCTCCAGG  50

seq1  CAGCTAGGATAAGGGTCTCAAAATCCACACCCACAGCGCCACGCCTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGATAAGGGTCTCAAAATCCACACCCACAGCGCCACGCCTACTT  100

seq1  CAAAAAGGTCACACCTACTTGAACAGGGCCACACCTTCTAGTAGTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGTCACACCTACTTGAACAGGGCCACACCTTCTAGTAGTGCCAC  150

seq1  TCCCTGGGCCAAGCATATACAAACCATCACACCATCTCAACAATAACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGCCAAGCATATACAAACCATCACACCATCTCAACAATAACAAC  200

seq1  AGAGGATATTGAGGAAAGACAATAAACATGGCCAGCCAAGGGCTCAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATATTGAGGAAAGACAATAAACATGGCCAGCCAAGGGCTCAGTCC  250

seq1  TCTCCCAGGCAGGAATCTCACCATTCCTACATTTAGACAGATGCTACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGGCAGGAATCTCACCATTCCTACATTTAGACAGATGCTACACT  300

seq1  CAAGGGACTAGAGCTTATTTGTGGCTCTTGTCTTTTCCAAATTAGACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGACTAGAGCTTATTTGTGGCTCTTGTCTTTTCCAAATTAGACTCT  350

seq1  ATATCGTGGTCCATCACAGGGCAGTCATGAGCAAATGCAGCAATGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTGGTCCATCACAGGGCAGTCATGAGCAAATGCAGCAATGAACAA  400

seq1  AGGAGACCAATGATCGTTCCGGAACTCCCGGTGATTGGATATAGTAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCAATGATCGTTCCGGAACTCCCGGTGATTGGATATAGTAGCTC  450

seq1  AGTGGGAGTTTCAAGTGCTGCCCCTTGGGTTGTGTGACTAACTTCCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGTTTCAAGTGCTGCCCCTTGGGTTGTGTGACTAACTTCCACAT  500

seq1  AAGCATGAACAGTTTTGAAATGCATGTGAATATATCAGACAGACAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGAACAGTTTTGAAATGCATGTGAATATATCAGACAGACAAAGGC  550

seq1  TGGACCATGGTGTTCTGATTCCTCCCTGACATCTGCACTTTCTCCTTTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCATGGTGTTCTGATTCCTCCCTGACATCTGCACTTTCTCCTTTCG  600

seq1  GGCAATATCTGTTTTAAGCAGGTGTTCTTTCCTGCTCCTTTCTGGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATCTGTTTTAAGCAGGTGTTCTTTCCTGCTCCTTTCTGGGAGAG  650

seq1  TGACCTTTCCCTTCTTCAGAAGGAGTTCCTATCGTGTTTGTACTCTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTCCCTTCTTCAGAAGGAGTTCCTATCGTGTTTGTACTCTGAGG  700

seq1  CTTGAGATATTCTAGGAGATTCTGGAAACTGTTCTTATGGTCACATGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATATTCTAGGAGATTCTGGAAACTGTTCTTATGGTCACATGGGC  750

seq1  ACAAACACACATACACACACACACACACACACACACACACACCTTAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACACATACACACACACACACACACACACACACACACCTTAGGTG  800

seq1  CACTGTAACAATGATTCTCAATCTTTGGGTCATGACCCTTGCAGTCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAACAATGATTCTCAATCTTTGGGTCATGACCCTTGCAGTCACAT  850

seq1  ATCAGATATCCTGCATATCTAATGTCTACATTTCAATCCATAACAGTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATCCTGCATATCTAATGTCTACATTTCAATCCATAACAGTGAT  900

seq1  GAAGTAGCAAGGACATAATTTTATGGTTGGGGTCATCACAACTGTATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCAAGGACATAATTTTATGGTTGGGGTCATCACAACTGTATTAA  950

seq1  AGGGTTGAAGCATTAGGAAGAGTGAAGACCACTGCTCTATAACCCTATCT  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGGTTGAAGCATTAGG-AGAGTGAAGACCACTGCTCTATAACCCTATCT  999

seq1  GAAGATGGTTCAGGCAGGTTAG-AAAACATCCCTTCTTTGTGATAA-CAC  1048
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GAAGATGGTTCAGGCAGGTTAGAAAAACATCCCTTCTTTGTGATAACCAC  1049

seq1  AGATGAATTATGAAGCCAAATGGTGGTAAGAGGTACATCATTTCCTTCCA  1098
      ||||||||||||||||| ||||||||| ||| ||||||||||  |||| |
seq2  AGATGAATTATGAAGCC-AATGGTGGT-AGA-GTACATCATT--CTTCAA  1094

seq1  GGGTTCCTT--AGACCATGTGGAAAATAAGTCATAGCTTTCTTTTCTAAT  1146
      ||||| |||   ||| |||| |||||||||||| ||||||||||    ||
seq2  GGGTTTCTTTAGGACAATGTTGAAAATAAGTCA-AGCTTTCTTT--CGAT  1141

seq1  TGCCCATATTCAGATTCCTCCCTCAATGTATTGTTTGCTGATCTCTAATC  1196
      ||||   | ||||| |||| ||||||     | | |||||||| ||   |
seq2  TGCC--AAATCAGA-TCCT-CCTCAA-----TATGTGCTGATC-CT--GC  1179

seq1  TTTTATCAGCTCGAGAGATTAAA  1219
        ||||||||| |||||| ||||
seq2  CCTTATCAGCT-GAGAGAATAAA  1201

seq1: chr10_88248895_88249806
seq2: B6Ng01-016B21.g_68_979 (reverse)

seq1  GACACATCTAAATCCTCTACTGCCTGGATGACAGCAGAACAGCAGTCTCC  50
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  GACACATCTAAATCCTCTA-TGCCTGGATGCCAGCAGAACAGCAGTCTCC  49

seq1  TAGTGAAATGGAGAGGATGTGCCATGAGGTGAAATGTTAGTCTGCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAATGGAGAGGATGTGCCATGAGGTGAAATGTTAGTCTGCTGCTG  99

seq1  ATCACGGCATCCT-CCCCAGCTCCCTAAACAGCACAGTTTCTCTAGTGAT  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCACGGCATCCTCCCCCAGCTCCCTAAACAGCACAGTTTCTCTAGTGAT  149

seq1  GTGTTAGTTACAGGTGCCAGCATTCTTCTCTCAGGTACTGTCTCCCAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTTACAGGTGCCAGCATTCTTCTCTCAGGTACTGTCTCCCAACT  199

seq1  CTTATCAGATGCTCAGGGAGCTGTTTTACTGTTCGTATTTCAGATAGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAGATGCTCAGGGAGCTGTTTTACTGTTCGTATTTCAGATAGGGA  249

seq1  AACTGAGGGACAAAGAAAGATAAGAAAGTAGTCTGAGAGCTGACTCTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGGACAAAGAAAGATAAGAAAGTAGTCTGAGAGCTGACTCTGAG  299

seq1  TGTAAATCCCACCCAGTTTTATTTTATTTACTACTGTTATTTTCTTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATCCCACCCAGTTTTATTTTATTTACTACTGTTATTTTCTTTCTT  349

seq1  GAGACAGGGTTTTTCTACTATGTAGCTCTGGCTGTCCTGATACTCATTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTTTCTACTATGTAGCTCTGGCTGTCCTGATACTCATTAT  399

seq1  ATAAACCAGGCTGTCTGTGACCTATCAGAGATCCACCTCCCTCTCTCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCAGGCTGTCTGTGACCTATCAGAGATCCACCTCCCTCTCTCTCC  449

seq1  CAAGTGTTGGAATTAATGGTATGCACCATCACACCTGGCTCACCCAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTGGAATTAATGGTATGCACCATCACACCTGGCTCACCCAATTT  499

seq1  TAAAAAATACTATTCCTGAACACTGGAGTTACTGAGCTATGCTGAGTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATACTATTCCTGAACACTGGAGTTACTGAGCTATGCTGAGTTTG  549

seq1  ACGAGTTATAAAAACTTAAAAGATCTGAATTGATACTGCTTAGGCTTTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTTATAAAAACTTAAAAGATCTGAATTGATACTGCTTAGGCTTTGC  599

seq1  ACAGCCACCTACAATAAGACAATAAATTACTGATGTACAACTTAACCAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACCTACAATAAGACAATAAATTACTGATGTACAACTTAACCAGA  649

seq1  CCTCTTAAACTGTATCATTTGTACACCTTCCATCCGGGGGCCACCCACCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAACTGTATCATTTGTACACCTTCCATCCGGGGGCCACCCACCC  699

seq1  AACAAAATGCTGGTACTCATGAGGGTCACTCTGCTATTCACTGAGCTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGCTGGTACTCATGAGGGTCACTCTGCTATTCACTGAGCTGAA  749

seq1  ACAAAACGCATTACACTACCAAAGAAATATTTATATTAGGCTAAAGCCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACGCATTACACTACCAAAGAAATATTTATATTAGGCTAAAGCCAA  799

seq1  TAAATTTTGGAACTCGAACAAAGGATTTTATAGTCAGAAATGTCTGAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGGAACTCGAACAAAGGATTTTATAGTCAGAAATGTCTGAGTT  849

seq1  AAAAATCCTACCTCTACCAGTGTTCTCATTTGTAAACTGGGGACAATTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTACCTCTACCAGTGTTCTCATTTGTAAACTGGGGACAATTAC  899

seq1  GTCATGAGAATTC  912
      |||||||||||||
seq2  GTCATGAGAATTC  912