BAC Information

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BAC

Clone NameB6Ng01-016D02
Chromosome10 (Build37)
Map Location 83,852,551 - 83,944,513
singlet/doubletdoublet
Overlap geneNuak1
Upstream geneLOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik, LOC432482
Downstream geneCkap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016D02.bB6Ng01-016D02.g
ACCDH850232DH850233
length1,1191,125
definitionDH850232|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D02, 5' end.DH850233|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,852,551 - 83,853,679)(83,943,383 - 83,944,513)
sequence
gaattctatgactccacaggaagctatgcaccttatcacttctggggcta
cagcatgggaccaagaggtcccactgtaccacagaacccaatccccaggc
gagaggctcacattccagaccttgtatagtctacatttagttccgagggc
tcccggcgacaggtggcaggaagaatctggacagggtatcactgagatca
acagatgatatggaacccttagaaggcaagggtccaaactgacagcaggc
ccgaccaccaccccatcccagaaccacttgcccaagcttctggctttcca
tgcatttcctcctgcaggggccagacacttagacttaggcaagctcttgg
gatggacacagctaagcaccacctcctctgaatgcatttctaactacttt
cacatttattgtcggtacctagaactggggattgcccacagaaactctcg
ggaaaaaattgactggggaaaataaacaaacagtacacagctcttcttcc
tacctgacaggagaagctaagttcagtgcgtgagaaatttatcctgaacc
ctgctatcagcaagagacagggctaccacacaaacctgggccatccaact
ccagagcctccactcctagactggactcatttgcagacggttgattctga
cagtttaattctgaacatagaaaatacctagagcaagtctgtggctgtta
ttattatgtattttgtaacaggaggaactgggttatgtggggtttttcca
aggtcaaggagctgggaagccccacagcccataagttggctttttggttt
ttttccccctgtcaatacaattttcaattttagcaagtgaaatctgaaat
ctgaaacacatccccaatccataatttttacacttgatagttagtgctcc
ttctagaataatccagccacttgccaaaaagggatttgagatttcatttc
ttgttctgaaggagaactgtttcaaccatcattttcaccaggctcgtgga
ctggacagaaatatgtaactgagtcaactctttcgtgagtgtcagccatg
ggatgtgtctcctcaagacgctcaagatgctcgtgacagcatgttctacg
accctaaaacagctctagc
gaattcactttgtagaccaggctggcctcgaactcagaaattcacccgtc
tctgcctcccaagtgctgggattaaaggcgtgcgccaccaccgcccagct
ggattctttatatcaatcataacaatagacattttttacttgcatagaac
tgtcaactttaaaatggattttaagcccacagatggaatgccagatctca
tgttttgctgtcccacatttccagctgggactatgatctgtctcctctcg
tgtgtttgtaattacttcccctttgaacccttttcttatccggccccgcc
cccacctcatgcttgcaagctttcctctctactggaattgtggacattgc
tcattaattttctagtccttgaggcaacatttcactgatgcaggctccta
tgtccctgaaatgaagtctcgggtagccacgggtgttagaggagagctct
ctgagttgcagaacagctcaagcaaggacctggggtggtgggtctccacg
cttctgtggtcaaggctgtggacagagggatgctgttactgggatttctg
accttggtcatgctaagcttcctggctcagcctcctggctggttttcatt
gcatcttggcttggccaaagccaagcagtttgtgctgggccagcagttgt
gaaatctccagcagagtggtattgtttatctatttttagaagtgtgtcct
tgaggctaccaagaatggagcgtggaggggttcctgtggtatctcactgc
ctctcttgggacttgccatccgaggactgacctcattttcattcgccctc
actaattgactgcagagccacgtctgtgtttccccagaatcatctcagct
gcttttttctgcgtgcacccatgtctgagctacacacacactgggcttct
cccccaatagaaactgatcttgttgccaggcacttgcttccagtacattt
ctctatagccacaggaggagttgcttgtagaccagtgatcccgatttacc
cacggtctccactttccattagctgtagtaggaaaatgcagacctgtgac
agtttgattctattctgcccatgcagctagtttgaaattgtgctacattc
cccctttggttctctacaaccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_83852551_83853679
seq2: B6Ng01-016D02.b_44_1162

seq1  GAATTCTATGACTCCACAGGAAGCTATGCACCTTATCACTTCTGGGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGACTCCACAGGAAGCTATGCACCTTATCACTTCTGGGGCTA  50

seq1  CAGCATGGGACCAAGAGGTCCCACTGTACCACAGAACCCAATCCCCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGGACCAAGAGGTCCCACTGTACCACAGAACCCAATCCCCAGGC  100

seq1  GAGAGGCTCACATTCCAGACCTTGTATAGTCTACATTTAGTTCCGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTCACATTCCAGACCTTGTATAGTCTACATTTAGTTCCGAGGGC  150

seq1  TCCCGGCGACAGGTGGCAGGAAGAATCTGGACAGGGTATCACTGAGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGCGACAGGTGGCAGGAAGAATCTGGACAGGGTATCACTGAGATCA  200

seq1  ACAGATGATATGGAACCCTTAGAAGGCAAGGGTCCAAACTGACAGCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGATATGGAACCCTTAGAAGGCAAGGGTCCAAACTGACAGCAGGC  250

seq1  CCGACCACCACCCCATCCCAGAACCACTTGCCCAAGCTTCTGGCTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCACCACCCCATCCCAGAACCACTTGCCCAAGCTTCTGGCTTTCCA  300

seq1  TGCATTTCCTCCTGCAGGGGCCAGACACTTAGACTTAGGCAAGCTCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCCTCCTGCAGGGGCCAGACACTTAGACTTAGGCAAGCTCTTGG  350

seq1  GATGGACACAGCTAAGCACCACCTCCTCTGAATGCATTTCTAACTACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACACAGCTAAGCACCACCTCCTCTGAATGCATTTCTAACTACTTT  400

seq1  CACATTTATTGTCGGTACCTAGAACTGGGGATTGCCCACAGAAACTCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTATTGTCGGTACCTAGAACTGGGGATTGCCCACAGAAACTCTCG  450

seq1  GGAAAAAATTGACTGGGGAAAATAAACAAACAGTACACAGCTCTTCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATTGACTGGGGAAAATAAACAAACAGTACACAGCTCTTCTTCC  500

seq1  TACCTGACAGGAGAAGCTAAGTTCAGTGCGTGAGAAATTTATCCTGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGACAGGAGAAGCTAAGTTCAGTGCGTGAGAAATTTATCCTGAACC  550

seq1  CTGCTATCAGCAAGAGACAGGGCTACCACACAAACCTGGGCCATCCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCAGCAAGAGACAGGGCTACCACACAAACCTGGGCCATCCAACT  600

seq1  CCAGAGCCTCCACTCCTAGACTGGACTCATTTGCAGACGGTTGATTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCTCCACTCCTAGACTGGACTCATTTGCAGACGGTTGATTCTGA  650

seq1  CAGTTTAATTCTGAACATAGAAAATACCTAGAGCAAGTCTGTGGCTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAATTCTGAACATAGAAAATACCTAGAGCAAGTCTGTGGCTGTTA  700

seq1  TTATTATGTATTTTGTAACAGGAGGAACTGGGTTATGTGGGGTTTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTATTTTGTAACAGGAGGAACTGGGTTATGTGGGGTTTTTCCA  750

seq1  AGGTCAAGGAGCTGGGAAGCCCCACAGCCCATAAGTTGGCTTTTTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGGAGCTGGGAAGCCCCACAGCCCATAAGTTGGCTTTTTGGTTT  800

seq1  TTTTCCCCCTGTCAATACAATTTTCAATTTTAGCAAGTGAAATCTGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCCTGTCAATACAATTTTCAATTTTAGCAAGTGAAATCTGAAAT  850

seq1  CTGAAACACATCCCCAATCCATAATTTTTACACTTGATAGTTAGTGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACACATCCCCAATCCATAATTTTTACACTTGATAGTTAGTGCTCC  900

seq1  TTCTAGAATAATCCAGCCACTTGCCAAAAAGGGATTTGAGATTTCATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAATAATCCAGCCACTTGCCAAAAAGGGATTTGAGATTTCATTTC  950

seq1  CTGTTCTGAAGGAGAACTGTTTCAACCCATCATTTTCACCAGGCTCGGTG  1000
       |||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  TTGTTCTGAAGGAGAACTGTTTCAA-CCATCATTTTCACCAGGCTC-GTG  998

seq1  GACTGGACAGAAATATGTAACTGAGGTCAACTCTTCCGTGAGTGGCAGGC  1050
      |||||||||||||||||||||||| |||||||||| |||||||| || ||
seq2  GACTGGACAGAAATATGTAACTGA-GTCAACTCTTTCGTGAGTGTCA-GC  1046

seq1  CATGGGGATGTGTCT-CTCAAGGACGGCTCAAAGGATGCTCGTGACAGCC  1099
      ||| ||||||||||| ||||| ||| ||||||  |||||||||||||| |
seq2  CAT-GGGATGTGTCTCCTCAA-GAC-GCTCAA--GATGCTCGTGACAG-C  1090

seq1  ATGTTCTACAGACCCTAAAACAGCTCTAGC  1129
      ||||||||| ||||||||||||||||||||
seq2  ATGTTCTAC-GACCCTAAAACAGCTCTAGC  1119

seq1: chr10_83943383_83944513
seq2: B6Ng01-016D02.g_68_1192 (reverse)

seq1  GGAAGGGTGGTAGAGAACAGAAGTGGGGAATGTAAGCCACATTTTC-AAC  49
      |||| ||| |||||||||  ||| ||||||||||   |||| |||| |||
seq2  GGAA-GGTTGTAGAGAACCAAAG-GGGGAATGTA--GCACAATTTCAAAC  46

seq1  TAGCTGCCTTGTGTCAGATTAGAATC-AACTGTCACAGGTCTGCATTTTC  98
      ||||||| |   | |||| ||||||| |||||||||||||||||||||||
seq2  TAGCTGCAT--GGGCAGAATAGAATCAAACTGTCACAGGTCTGCATTTTC  94

seq1  CCCTTACTTAACAGCTTATGGAAAGTGGAGACCCGTGGGTAAATCGGGAT  148
      |   ||||  |||||| |||||||||||||| ||||||||||||||||||
seq2  C---TACT--ACAGCTAATGGAAAGTGGAGA-CCGTGGGTAAATCGGGAT  138

seq1  CCACTGGTCTAC-AGCATCTCCT-CTGTGGCTATAGAGAAATGTACTGG-  195
       ||||||||||| |||| ||||| ||||||||||||||||||||||||| 
seq2  -CACTGGTCTACAAGCAACTCCTCCTGTGGCTATAGAGAAATGTACTGGA  187

seq1  AGC-AGTGCCTGGCACCAGGATCAGTTTCTATTGGGGGAGAAG-CCAGTG  243
      ||| ||||||||||| || |||||||||||||||||||||||| ||||||
seq2  AGCAAGTGCCTGGCAACAAGATCAGTTTCTATTGGGGGAGAAGCCCAGTG  237

seq1  TGTGTGTAGCTCAGACATGGGTGCACGCAGGAAAAAGCAGCTGAGATGAT  293
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGTGTAGCTCAGACATGGGTGCACGCAGAAAAAAGCAGCTGAGATGAT  287

seq1  TCTGGGGAAACACAGACGTGGCTCTGCAGTCAATTAGTGAGGGCGAATGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAAACACAGACGTGGCTCTGCAGTCAATTAGTGAGGGCGAATGA  337

seq1  AAATGAGGTCAGTCCTCGGATGGCAAGTCCCAAGAGAGGCAGTGAGATAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGTCAGTCCTCGGATGGCAAGTCCCAAGAGAGGCAGTGAGATAC  387

seq1  CACAGGAACCCCTCCACGCTCCATTCTTGGTAGCCTCAAGGACACACTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAACCCCTCCACGCTCCATTCTTGGTAGCCTCAAGGACACACTTC  437

seq1  TAAAAATAGATAAACAATACCACTCTGCTGGAGATTTCACAACTGCTGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGATAAACAATACCACTCTGCTGGAGATTTCACAACTGCTGGC  487

seq1  CCAGCACAAACTGCTTGGCTTTGGCCAAGCCAAGATGCAATGAAAACCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAAACTGCTTGGCTTTGGCCAAGCCAAGATGCAATGAAAACCAG  537

seq1  CCAGGAGGCTGAGCCAGGAAGCTTAGCATGACCAAGGTCAGAAATCCCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGCTGAGCCAGGAAGCTTAGCATGACCAAGGTCAGAAATCCCAG  587

seq1  TAACAGCATCCCTCTGTCCACAGCCTTGACCACAGAAGCGTGGAGACCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCATCCCTCTGTCCACAGCCTTGACCACAGAAGCGTGGAGACCCA  637

seq1  CCACCCCAGGTCCTTGCTTGAGCTGTTCTGCAACTCAGAGAGCTCTCCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAGGTCCTTGCTTGAGCTGTTCTGCAACTCAGAGAGCTCTCCTC  687

seq1  TAACACCCGTGGCTACCCGAGACTTCATTTCAGGGACATAGGAGCCTGCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCCGTGGCTACCCGAGACTTCATTTCAGGGACATAGGAGCCTGCA  737

seq1  TCAGTGAAATGTTGCCTCAAGGACTAGAAAATTAATGAGCAATGTCCACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAATGTTGCCTCAAGGACTAGAAAATTAATGAGCAATGTCCACA  787

seq1  ATTCCAGTAGAGAGGAAAGCTTGCAAGCATGAGGTGGGGGCGGGGCCGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTAGAGAGGAAAGCTTGCAAGCATGAGGTGGGGGCGGGGCCGGA  837

seq1  TAAGAAAAGGGTTCAAAGGGGAAGTAATTACAAACACACGAGAGGAGACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGGGTTCAAAGGGGAAGTAATTACAAACACACGAGAGGAGACA  887

seq1  GATCATAGTCCCAGCTGGAAATGTGGGACAGCAAAACATGAGATCTGGCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAGTCCCAGCTGGAAATGTGGGACAGCAAAACATGAGATCTGGCA  937

seq1  TTCCATCTGTGGGCTTAAAATCCATTTTAAAGTTGACAGTTCTATGCAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTGTGGGCTTAAAATCCATTTTAAAGTTGACAGTTCTATGCAAG  987

seq1  TAAAAAATGTCTATTGTTATGATTGATATAAAGAATCCAGCTGGGCGGTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGTCTATTGTTATGATTGATATAAAGAATCCAGCTGGGCGGTG  1037

seq1  GTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGACGGGTGAATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGACGGGTGAATT  1087

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1125