BAC Information

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BAC

Clone NameB6Ng01-016I11
Chromosome10 (Build37)6 (Build37)
Map Location 104,053,906 - 104,054,3637,358,273 - 7,359,370
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016I11.bB6Ng01-016I11.g
ACCDH850466DH850467
length4561,091
definitionDH850466|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I11, 5' end.DH850467|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,906 - 104,054,363)(7,358,273 - 7,359,370)
sequence
gaattctcaactgaggaataccgaagggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagctggtacaaccactctggaaatcagtctggtggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctggac
atatacccagaagatgctccaaagtttaagaaggatacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaattacccagat
atccctcaactgaggaatggatacagaaaatgtggtacatttacacaatg
gctatt
gaattctttagccatttcataatataagcagttacgtgtctctagatatg
gcacaaaaagaggagcattgtgtggtagcattggtaacaatcctggtagc
actgccaatcacagtatccccatctcatggctacaaggactgtgggaatg
agacacaggaaagtcaatgacctatggagcagctacagtgagacttaaag
gacttcacaacccaggcctgaggaagcaaggatatctgcaagtgagaacg
tggggttctgtatgcccgattgcttggattctctttggattgcctgatgg
attgaagggctatctgatatacttcttagagctgctctgcatttttgtct
taacatagctgtagacattttttttcatttcctttgccagacaaatagca
ctgataaataatggaagaagaaagaatacaacttaagggctttgagaatt
cttccttaagttatccttcagttaagaggaaaagctagcagaaattctaa
gatcagtggattgtgagaattagcttaagtccatctcttatttcattatc
accatgttagtgatattcatcaaacttcagcaatttcttccaggatcgat
catctgacacaaatatcctttaaaagcacttgtgacaatataagtgctgc
gttctttcttctctctcatagttctttaaaagtccatttaatccatcata
ttaaaattacagttacagcttcactgtggttgataataccatttacaaaa
tcaaggcacaaattcaactatgtgacactgaaagcattttgaaaatctat
ccgcattttggtgttttgtatttgaatgtcatttctctcagtaaacttat
ataagcatttaagaaagcattaccttgttatctgtgaataaacatatttg
gaaggcacttgtttcatactctaaattgcatatgggttataactaccatt
ctcccgatgataatctagaggaaagaatataatacagctttgcttcataa
cttattgtggtaactggctcctagttggatcagcttactgtcacagttac
aacaaaagtctcctggggttccagaatcttcagtagacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053906_104054363
seq2: B6Ng01-016I11.b_43_498 (reverse)

seq1  AATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGT  50
      |||||  |||||||||||||||||||||||||||||||| ||||||| ||
seq2  AATAG--CCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCAGT  48

seq1  TGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTG  100
      ||||||  ||||||||  ||||||||| ||||||||||||||||||||||
seq2  TGAGGGATATCTGGGTAATTTCCAGCTTCTGGCTATTATAAATAAGGCTG  98

seq1  CTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCT  150
      ||||||| |||||||||||||| |||||||||    |||| |||||||||
seq2  CTATGAACATAGTGGAGCATGTATCCTTCTTAAACTTTGGAGCATCTTCT  148

seq1  GGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTC  200
      || |||||| |||| |||||||||||||||||||||||||||||||||||
seq2  GGGTATATGTCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTC  198

seq1  CAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCC  250
      || |||||||| ||||| |||||| |||||||||||||||||||| ||| 
seq2  CAGTTTTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTACCAGCT  248

seq1  TGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTTGC  298

seq1  CAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGT  348

seq1  GAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGG  398

seq1  ATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGT  450
      ||| |||||||||||||||||||||||| ||| ||||||||||||||| |
seq2  ATGCTGAACATTTTTTCAGGTGCTTCTCAGCCCTTCGGTATTCCTCAGTT  448

seq1  GAGAATTC  458
      ||||||||
seq2  GAGAATTC  456

seq1: chr6_7358273_7359370
seq2: B6Ng01-016I11.g_67_1157

seq1  GAATTCTTTAGCCATTTCATAATATAAGCAGTTACGTGTCTCTAGATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGCCATTTCATAATATAAGCAGTTACGTGTCTCTAGATATG  50

seq1  GCACAAAAAGAGGAGCATTGTGTGGTAGCATTGGTAACAATCCTGGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAAGAGGAGCATTGTGTGGTAGCATTGGTAACAATCCTGGTAGC  100

seq1  ACTGCCAATCACAGTATCCCCATCTCATGGCTACAAGGACTGTGGGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAATCACAGTATCCCCATCTCATGGCTACAAGGACTGTGGGAATG  150

seq1  AGACACAGGAAAGTCAATGACCTATGGAGCAGCTACAGTGAGACTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGGAAAGTCAATGACCTATGGAGCAGCTACAGTGAGACTTAAAG  200

seq1  GACTTCACAACCCAGGCCTGAGGAAGCAAGGATATCTGCAAGTGAGAACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCACAACCCAGGCCTGAGGAAGCAAGGATATCTGCAAGTGAGAACG  250

seq1  TGGGGTTCTGTATGCCCGATTGCTTGGATTCTCTTTGGATTGCCTGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCTGTATGCCCGATTGCTTGGATTCTCTTTGGATTGCCTGATGG  300

seq1  ATTGAAGGGCTATCTGATATACTTCTTAGAGCTGCTCTGCATTTTTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGGCTATCTGATATACTTCTTAGAGCTGCTCTGCATTTTTGTCT  350

seq1  TAACATAGCTGTAGACATTTTTTTTCATTTCCTTTGCCAGACAAATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGCTGTAGACATTTTTTTTCATTTCCTTTGCCAGACAAATAGCA  400

seq1  CTGATAAATAATGGAAGAAGAAAGAATACAACTTAAGGGCTTTGAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAATAATGGAAGAAGAAAGAATACAACTTAAGGGCTTTGAGAATT  450

seq1  CTTCCTTAAGTTATCCTTCAGTTAAGAGGAAAAGCTAGCAGAAATTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTAAGTTATCCTTCAGTTAAGAGGAAAAGCTAGCAGAAATTCTAA  500

seq1  GATCAGTGGATTGTGAGAATTAGCTTAAGTCCATCTCTTATTTCATTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGGATTGTGAGAATTAGCTTAAGTCCATCTCTTATTTCATTATC  550

seq1  ACCATGTTAGTGATATTCATCAAACTTCAGCAATTTCTTCCAGGATCGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTAGTGATATTCATCAAACTTCAGCAATTTCTTCCAGGATCGAT  600

seq1  CATCTGACACAAATATCCTTTAAAAGCACTTGTGACAATATAAGTGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACACAAATATCCTTTAAAAGCACTTGTGACAATATAAGTGCTGC  650

seq1  GTTCTTTCTTCTCTCTCATAGTTC-TTAAAAGTCCATTTAATCCATCATA  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTCTTTCTTCTCTCTCATAGTTCTTTAAAAGTCCATTTAATCCATCATA  700

seq1  TTAAAATTACAGTTACAGCTTCACTGTGGTTGATAATACCATTTACAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTACAGTTACAGCTTCACTGTGGTTGATAATACCATTTACAAAA  750

seq1  TCAAGGCACAAATTCAACTATGTGACACTGAAAGCATTTTGAAAATCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCACAAATTCAACTATGTGACACTGAAAGCATTTTGAAAATCTAT  800

seq1  CCGCATTTTGGTGTTTTGTATTTGAATGTCATTTCTCTCAAGTAAACTTA  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCGCATTTTGGTGTTTTGTATTTGAATGTCATTTCTCTC-AGTAAACTTA  849

seq1  TATAAGCATTTAAGAAAGCATTACCTTGTTATCTGTGAATAAAACATATT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATAAGCATTTAAGAAAGCATTACCTTGTTATCTGTGAAT-AAACATATT  898

seq1  TGGAAGGCACTTGTTTCATACTCTAAATTGCAATAT-GGTTATAACTACC  948
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  TGGAAGGCACTTGTTTCATACTCTAAATTGC-ATATGGGTTATAACTACC  947

seq1  AATTCTCCCGATGATAATCTAGAGGAAAGATATA-AATACAGCTTTGCTT  997
       ||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  -ATTCTCCCGATGATAATCTAGAGGAAAGA-ATATAATACAGCTTTGCTT  995

seq1  CCAATAACTTATGGTGGTAACTGGCTCCTAGTTTGAACCAGCTTAACTGT  1047
      |  ||||||||| |||||||||||||||||| ||| | |||||| |||||
seq2  C--ATAACTTATTGTGGTAACTGGCTCCTAG-TTGGATCAGCTT-ACTGT  1041

seq1  CACAGTTACAACAAAAGTCTCCTGGGGTTCACAGAATCTTCAGTAGACAT  1097
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CACAGTTACAACAAAAGTCTCCTGGGGTTC-CAGAATCTTCAGTAGACTT  1090

seq1  C  1098
      |
seq2  C  1091