BAC Information

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BAC

Clone NameB6Ng01-016K15
Chromosome10 (Build37)
Map Location 127,344,188 - 127,469,775
singlet/doubletdoublet
Overlap geneSdro, LOC382468, Hsd17b6, LOC100043618, Prim1
Upstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7
Downstream geneLOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016K15.bB6Ng01-016K15.g
ACCDH850566DH850567
length883393
definitionDH850566|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K15, 5' end.DH850567|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,344,188 - 127,345,068)(127,469,377 - 127,469,775)
sequence
gaattccacgcaaaattggagctaacaaatatgtcaaaaaaacagtgtaa
aagcctacagcctctgtatccagacacctccttccacatgcccctgagga
cctctgctactttccctcagcctgcatgggctctatgtccctaagggagg
caatgtgcagaaccccgagtacctacctagtcaccctcctgcccaggcct
cgctggggagagattcatgctgggtacaatgttggaggtgtctgagagcc
acatcactaaaaggacagcctgacttgtgagagtgagcaaggctcttcaa
ggggtgggggtggcaatgtgcagctagaggctggctaaggattcttgagt
gcccacccactatctacaagcatcctggcccagaattaatgggtgattta
ctcacctagagcatgccagagtcaggagacctttgttattgttctccagc
tttttttttttagaagttattttctttatttacatttcaaatgttattcc
ctttcctggcagctttaatgctttgtcatggaagtctgaccctcaaaccc
attttctctggagtcctttctcttcctgaggtttgaatcccactccaccc
ccattcaaatgcctatctctgtcccagagtctgggaggaggggcatggtg
aggtgcctgaggcctgcctgttgtttatgtcatgagccccaacaggtgtg
aactgctcagctgccaatctgtatctcctccacacctgtgtgcagaaatc
actaattttaatactttttccccagatatttttgtagacaatatagaact
cacagaagaaaaattaacagcaataactaggcatcccactagccaaatag
tttcacttagttttaatgtgtgtgtgtgtgtgt
ttaaattacccccatataggagagactgcaagtgactagggacagatgtg
gatctgagactatagctcagcagtcacacttttgcagcataggtgacagc
accattccatgcccggtacttcacacaatcaggcatgatggtgagagctt
gtaatggcagcacttgggacacagaggttatccttagctacaccaacctt
catccccataaaatctatttgcaatctcttttgactctcatgtggatcat
ttaggctatttagcctattattgccttcatctgtaaaatagggatactgc
tccataggattgctaggaaggcaacaggtagtatatgcacatgacttagt
gtttgttactactaaaagtgtgtttaaaaggctctgtgggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127344188_127345068
seq2: B6Ng01-016K15.b_45_927

seq1  GAATTCCACGCAAAATTGGAGCTAACAAATATGTCAAAAAAACAGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGCAAAATTGGAGCTAACAAATATGTCAAAAAAACAGTGTAA  50

seq1  AAGCCTACAGCCTCTGTATCCAGACACCTCCTTCCACATGCCCCTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTACAGCCTCTGTATCCAGACACCTCCTTCCACATGCCCCTGAGGA  100

seq1  CCTCTGCTACTTTCCCTCAGCCTGCATGGGCTCTATGTCCCTAAGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTACTTTCCCTCAGCCTGCATGGGCTCTATGTCCCTAAGGGAGG  150

seq1  CAATGTGCAGAACCCCGAGTACCTACCTAGTCACCCTCCTGCCCAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGCAGAACCCCGAGTACCTACCTAGTCACCCTCCTGCCCAGGCCT  200

seq1  CGCTGGGGAGAGATTCATGCTGGGTACAATGTTGGAGGTGTCTGAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGGGAGAGATTCATGCTGGGTACAATGTTGGAGGTGTCTGAGAGCC  250

seq1  ACATCACTAAAAGGACAGCCTGACTTGTGAGAGTGAGCAAGGCTCTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTAAAAGGACAGCCTGACTTGTGAGAGTGAGCAAGGCTCTTCAA  300

seq1  GGGGTGGGGGTGGCAATGTGCAGCTAGAGGCTGGCTAAGGATTCTTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGGTGGCAATGTGCAGCTAGAGGCTGGCTAAGGATTCTTGAGT  350

seq1  GCCCACCCACTATCTACAAGCATCCTGGCCCAGAATTAATGGGTGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCACTATCTACAAGCATCCTGGCCCAGAATTAATGGGTGATTTA  400

seq1  CTCACCTAGAGCATGCCAGAGTCAGGAGACCTTTGTTATTGTTCTCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTAGAGCATGCCAGAGTCAGGAGACCTTTGTTATTGTTCTCCAGC  450

seq1  TTTTTTTTTTTAGAAGTTATTTTCTTTATTTACATTTCAAATGTTATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAGAAGTTATTTTCTTTATTTACATTTCAAATGTTATTCC  500

seq1  CTTTCCTGGCAGCTTTAATGCTTTGTCATGGAAGTCTGACCCTCAAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGCAGCTTTAATGCTTTGTCATGGAAGTCTGACCCTCAAACCC  550

seq1  ATTTTCTCTGGAGTCCTTTCTCTTCCTGAGGTTTGAATCCCACTCCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTGGAGTCCTTTCTCTTCCTGAGGTTTGAATCCCACTCCACCC  600

seq1  CCATTCAAATGCCTATCTCTGTCCCAGAGTCTGGGAGGAGGGGCATGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAAATGCCTATCTCTGTCCCAGAGTCTGGGAGGAGGGGCATGGTG  650

seq1  AGGTGCCTGAGGCCTGCCTGTTGTTTATGTCATGAGCCCCAACAGGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCTGAGGCCTGCCTGTTGTTTATGTCATGAGCCCCAACAGGTGTG  700

seq1  AACTGCTCAGCTGCCAATCTGTATCTCCTCCACACCTGTGTGCAG-AATC  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTGCTCAGCTGCCAATCTGTATCTCCTCCACACCTGTGTGCAGAAATC  750

seq1  ACTAATTTTAATACTTTTTCCCCAGATATTTTTGTAGACAATATAGAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTAATACTTTTTCCCCAGATATTTTTGTAGACAATATAGAACT  800

seq1  CACAGAAGAAAAATTAACAGCAATAACTAGGCATCCCACTAGCC-AATAG  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACAGAAGAAAAATTAACAGCAATAACTAGGCATCCCACTAGCCAAATAG  850

seq1  TTTCACTTAGTTTTAATGTGTGTGTGTGTGTGT  881
      |||||||||||||||||||||||||||||||||
seq2  TTTCACTTAGTTTTAATGTGTGTGTGTGTGTGT  883

seq1: chr10_127469377_127469775
seq2: B6Ng01-016K15.g_69_467 (reverse)

seq1  GCCCCCACAGAGCCTTTTAAACACACTTTTAGTAGTAACAAACACTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACAGAGCCTTTTAAACACACTTTTAGTAGTAACAAACACTAAGT  50

seq1  CATGTGCATATACTACCTGTTGCCTTCCTAGCAATCCTATGGAGCAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCATATACTACCTGTTGCCTTCCTAGCAATCCTATGGAGCAGTAT  100

seq1  CCCTATTTTACAGATGAAGGCAATAATAGGCTAAATAGCCTAAATGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTTACAGATGAAGGCAATAATAGGCTAAATAGCCTAAATGATCC  150

seq1  ACATGAGAGTCAAAAGAGATTGCAAATAGATTTTATGGGGATGAAGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAGTCAAAAGAGATTGCAAATAGATTTTATGGGGATGAAGGTTG  200

seq1  GTGTAGCTAAGGATAACCTCTGTGTCCCAAGTGCTGCCATTACAAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTAAGGATAACCTCTGTGTCCCAAGTGCTGCCATTACAAGCTCT  250

seq1  CACCATCATGCCTGATTGTGTGAAGTACCGGGCATGGAATGGTGCTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCATGCCTGATTGTGTGAAGTACCGGGCATGGAATGGTGCTGTCA  300

seq1  CCTATGCTGCAAAAGTGTGACTGCTGAGCTATAGTCTCAGATCCACATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTGCAAAAGTGTGACTGCTGAGCTATAGTCTCAGATCCACATCT  350

seq1  GTCCCTAGTCACTTGCAGTCTCTCCTATATGGGGGTGATTTAAGAATTC  399
      |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTCCCTAGTCACTTGCAGTCTCTCCTATATGGGGGTAATTTAAGAATTC  399