BAC Information

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BAC

Clone NameB6Ng01-016L20
Chromosome10 (Build37)
Map Location 36,754,370 - 36,868,822
singlet/doubletdoublet
Overlap geneMarcks, LOC100040846
Upstream geneLOC667860, Hs3st5, Hdac2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016L20.bB6Ng01-016L20.g
ACCDH850616DH850617
length1,1781,128
definitionDH850616|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L20, 5' end.DH850617|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,754,370 - 36,755,568)(36,867,684 - 36,868,822)
sequence
gaattcccagattaggctggcctgtggacatgcctgtgatttttgggttt
gaggtgagaagacctactctaccaggggcagtatcattggttaagttgga
gtcctagactctttcaagaatagagaacgtgtgttaaatttcaagcatgc
acacattcattgttaaattccaagcattcacattcattgctccatgctgt
gggtataatatgaccagaggcttcaggttcctgctgcctcaactctcctg
aaataattgactctacctggaactataagttaaaactaagatttttttct
aacccaaattagttattaccagggtattttatcatggcaaatgatgtgag
accaggacaatgagtttgaagctagcctggactacatgagactttatcac
aaaaaataaagactattaaaaaaaaatttcaaacaatcaaaaagtatgaa
actaaaaggtttaaaatcaacaagcacaaacaaatgacccttcagctcag
gtgacatctccaaaggaatagattctggggaaagactgagcaagcaggta
ctgcctgcttcccatctctttccttctacacaccacgggaaggcgggccc
ctccctgaagcacaagaaagcatgtctgggaaacctaccaacaatctatg
atggaaactggaaaaggagactaatgttttgattcagcgaatatttgaaa
tgatttcatcccaaagaaaactatcccaattaaagtgccaagcattcaaa
aatcccaaacagaaaacagatgcgacatgtgttcagttcagaactggctt
gggaataactctcctgaaattgagtgaggacacatttaaacaatataatt
cataccagagcgttggagacgtatttcagaacagacaaagcgggtattat
gcacacatttggttatccctagagcatgtacatgcaccaaattcaagaaa
tatggctgctatttagtcctgacatttccacatgcttttaagtgagtgaa
ttactgattgcatagaccacgtaaacaggaaactaaatatatatgcctgg
tatgtttttagtaagattttcaataactatcaggaggtgaggaaaactac
ttcctactcatacttttcttaaaatattctgctctgtttgaatgaacttg
gtatcacgttactttgtcttagaagacc
gaattctcaccttggtgtgatggtgacctgataggtgataatttccaagg
agatttacttgtttctatgagttctgattcagtaccaatgggaatcaatc
tcagcttcatgttgctgtcttctttatgcatagacacccactgtaataag
aattatgttactatctttataacatcacaaaacccactttaatgttccat
taaatatgctcaaatttgctaaatactcggtaatgatggactctcagtag
agaattaagctacaattattgcctaaactagatacttgcataatgtgaaa
taatttttaccctacacccaccaaattgaatgaatccttcaatttttcta
gtaaatggaagataaaatgaaaatgattttcaaaaactgtgacatttcaa
gtataacagttctttcttcagtcattattggagattcctaaaacattact
tttttaaaaatgtaaatactgtggatgaaaatttgcagggtttctggtct
tctgtttttcccctctggctaaagaacaggaattcacattcaggggaaat
tgctatgtatttttatttaactatatagtcactgtatagtttaagctcaa
agccctcaggacatttagaaacaggcaacagcagcagagaaagctgctaa
gggaactgttagcatgagaaacaccacaatgaagatgggaaaaattctct
gacccagaaggaaaactagaatcaataacaaactgatgtcgttttgatgt
gaaatgcaactgatgcaactgttgctgtggtaaagacaagcaagccaaga
gttcaaaggtcgaaagttcaaagtcaaggctctgttctgaaaagctgcac
cttcttcaaagaaaggggagacaagctgacagagatctatctggcttcct
tcaggggtttcagaatttcagttaggaactaccttggaaagagttcttct
atcttcattttataaaatctatcaatacgaaagtcttgttaatatagttt
ggctgaagggaaactaatcaattacagcagaattagagcttatagtcagt
gacccagaacaatctgtatcatggagtctgtgggatctaaaagctgtaaa
cacactagtgaatgacttcgaaagcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_36754370_36755568
seq2: B6Ng01-016L20.b_47_1224

seq1  GAATTCCCAGATTAGGCTGGCCTGTGGACATGCCTGTGATTTTTGGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGATTAGGCTGGCCTGTGGACATGCCTGTGATTTTTGGGTTT  50

seq1  GAGGTGAGAAGACCTACTCTACCAGGGGCAGTATCATTGGTTAAGTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGAAGACCTACTCTACCAGGGGCAGTATCATTGGTTAAGTTGGA  100

seq1  GTCCTAGACTCTTTCAAGAATAGAGAACGTGTGTTAAATTTCAAGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGACTCTTTCAAGAATAGAGAACGTGTGTTAAATTTCAAGCATGC  150

seq1  ACACATTCATTGTTAAATTCCAAGCATTCACATTCATTGCTCCATGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCATTGTTAAATTCCAAGCATTCACATTCATTGCTCCATGCTGT  200

seq1  GGGTATAATATGACCAGAGGCTTCAGGTTCCTGCTGCCTCAACTCTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAATATGACCAGAGGCTTCAGGTTCCTGCTGCCTCAACTCTCCTG  250

seq1  AAATAATTGACTCTACCTGGAACTATAAGTTAAAACTAAGATTTTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTGACTCTACCTGGAACTATAAGTTAAAACTAAGATTTTTTTCT  300

seq1  AACCCAAATTAGTTATTACCAGGGTATTTTATCATGGCAAATGATGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAATTAGTTATTACCAGGGTATTTTATCATGGCAAATGATGTGAG  350

seq1  ACCAGGACAATGAGTTTGAAGCTAGCCTGGACTACATGAGACTTTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGACAATGAGTTTGAAGCTAGCCTGGACTACATGAGACTTTATCAC  400

seq1  AAAAAATAAAGACTATTAAAAAAAAATTTCAAACAATCAAAAAGTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAGACTATTAAAAAAAAATTTCAAACAATCAAAAAGTATGAA  450

seq1  ACTAAAAGGTTTAAAATCAACAAGCACAAACAAATGACCCTTCAGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGGTTTAAAATCAACAAGCACAAACAAATGACCCTTCAGCTCAG  500

seq1  GTGACATCTCCAAAGGAATAGATTCTGGGGAAAGACTGAGCAAGCAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCTCCAAAGGAATAGATTCTGGGGAAAGACTGAGCAAGCAGGTA  550

seq1  CTGCCTGCTTCCCATCTCTTTCCTTCTACACACCACGGGAAGGCGGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCTTCCCATCTCTTTCCTTCTACACACCACGGGAAGGCGGGCCC  600

seq1  CTCCCTGAAGCACAAGAAAGCATGTCTGGGAAACCTACCAACAATCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGAAGCACAAGAAAGCATGTCTGGGAAACCTACCAACAATCTATG  650

seq1  ATGGAAACTGGAAAAGGAGACTAATGTTTTGATTCAGCGAATATTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACTGGAAAAGGAGACTAATGTTTTGATTCAGCGAATATTTGAAA  700

seq1  TGATTTCATCCCAAAGAAAACTATCCCAATTAAAGTGCCAAGCATTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATCCCAAAGAAAACTATCCCAATTAAAGTGCCAAGCATTCAAA  750

seq1  AATCCCAAACAGAAAACAGATGCGACATGTGTTCAGTTCAGAACTGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAACAGAAAACAGATGCGACATGTGTTCAGTTCAGAACTGGCTT  800

seq1  GGGAATAACTCTCCTGAAATTGAGTGAGGACACATTTAAACAATATAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAACTCTCCTGAAATTGAGTGAGGACACATTTAAACAATATAATT  850

seq1  CATACCAGAGCGTTGGAGACGTATTTCAGAACAGACAAAGC-GGTATTAT  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATACCAGAGCGTTGGAGACGTATTTCAGAACAGACAAAGCGGGTATTAT  900

seq1  GCACACATTTGGTTATCCCTAGAGCATGTACATGCACCAAATTCAAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATTTGGTTATCCCTAGAGCATGTACATGCACCAAATTCAAGAAA  950

seq1  TATGGCTGCTATTTAGTCCTGACATTTCCACATGCTTTTTAAGTGAGTGA  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATGGCTGCTATTTAGTCCTGACATTTCCACATGC-TTTTAAGTGAGTGA  999

seq1  ATTACTGATTGCATAAGACACGTAAACAGGAAACTTAAATATATATGCCT  1049
      |||||||||||||||   |||||||||||||||| |||||||||||||||
seq2  ATTACTGATTGCATAGACCACGTAAACAGGAAAC-TAAATATATATGCCT  1048

seq1  GGTAATGTTTTTAGTACAGAATTTTTCAAATAACTAACCAAGAGGTGAGG  1099
      ||| |||||||||||| |||  ||||| ||||||| | || |||||||||
seq2  GGT-ATGTTTTTAGTA-AGA--TTTTC-AATAACT-ATCAGGAGGTGAGG  1092

seq1  AAAAACTACTTCCCTACTTCAATACTTTCCTAAAAATATTCTGCTTCCTG  1149
       |||||||||| ||||||   ||||||| || |||||||||||||  || 
seq2  -AAAACTACTT-CCTACT--CATACTTTTCTTAAAATATTCTGCT--CT-  1135

seq1  GTTTGGAAAATGACTTTGGAACCAACGTTTACTTTGTCTTTAAGAAGACC  1199
      |||||   |||||  |||| | | ||| ||||||||||||  ||||||||
seq2  GTTTG---AATGAACTTGGTATC-ACG-TTACTTTGTCTT--AGAAGACC  1178

seq1: chr10_36867684_36868822
seq2: B6Ng01-016L20.g_71_1198 (reverse)

seq1  TTTGCTTCTGAAGTCATCCACCTTGTGTGTTTTCCAAGGCTTTTAAGATC  50
      |||||||  |||||||| || || ||||||||   |  |||||| |||||
seq2  TTTGCTTTCGAAGTCATTCA-CTAGTGTGTTT---ACAGCTTTT-AGATC  45

seq1  CCACAGACTCCACTGATACAGATTG-TCTGGGTCACTGACCTATAAGCTC  99
      |||||||||||| |||||||||||| ||||||||||||| ||||||||||
seq2  CCACAGACTCCA-TGATACAGATTGTTCTGGGTCACTGA-CTATAAGCTC  93

seq1  TAATTCTTGCCTGTAATTGATTTAAGTTTCCCTTCAGCCAAAACCTATAA  149
      |||||||   ||||||||||||  ||||||||||||||||||  ||||| 
seq2  TAATTCT--GCTGTAATTGATT--AGTTTCCCTTCAGCCAAA--CTATAT  137

seq1  TTACAAGACTTTCGTATTGATAGATTTTATAAAATGAAGATAGAAGAACT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGACTTTCGTATTGATAGATTTTATAAAATGAAGATAGAAGAACT  187

seq1  CTTT-CAAGGTAGTTCCTAACTGAAATTCTGAAACCCCTGAAGGAAGCCA  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAGGTAGTTCCTAACTGAAATTCTGAAACCCCTGAAGGAAGCCA  237

seq1  GATAGATCTCTGTCAGCTTGTCTCCCCTTTCTTTGAAGAAGGTGCAGCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATCTCTGTCAGCTTGTCTCCCCTTTCTTTGAAGAAGGTGCAGCTT  287

seq1  TTCAGAACAGAGCCTTGACTTTGAACTTTCGACCTTTGAACTCTTGGCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACAGAGCCTTGACTTTGAACTTTCGACCTTTGAACTCTTGGCTT  337

seq1  GCTTGTCTTTACCACAGCAACAGTTGCATCAGTTGCATTTCACATCAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTTACCACAGCAACAGTTGCATCAGTTGCATTTCACATCAAAA  387

seq1  CGACATCAGTTTGTTATTGATTCTAGTTTTCCTTCTGGGTCAGAGAATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATCAGTTTGTTATTGATTCTAGTTTTCCTTCTGGGTCAGAGAATTT  437

seq1  TTCCCATCTTCATTGTGGTGTTTCTCATGCTAACAGTTCCCTTAGCAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTTCATTGTGGTGTTTCTCATGCTAACAGTTCCCTTAGCAGCT  487

seq1  TTCTCTGCTGCTGTTGCCTGTTTCTAAATGTCCTGAGGGCTTTGAGCTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTGCTGTTGCCTGTTTCTAAATGTCCTGAGGGCTTTGAGCTTA  537

seq1  AACTATACAGTGACTATATAGTTAAATAAAAATACATAGCAATTTCCCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACAGTGACTATATAGTTAAATAAAAATACATAGCAATTTCCCCT  587

seq1  GAATGTGAATTCCTGTTCTTTAGCCAGAGGGGAAAAACAGAAGACCAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAATTCCTGTTCTTTAGCCAGAGGGGAAAAACAGAAGACCAGAA  637

seq1  ACCCTGCAAATTTTCATCCACAGTATTTACATTTTTAAAAAAGTAATGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCAAATTTTCATCCACAGTATTTACATTTTTAAAAAAGTAATGTT  687

seq1  TTAGGAATCTCCAATAATGACTGAAGAAAGAACTGTTATACTTGAAATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATCTCCAATAATGACTGAAGAAAGAACTGTTATACTTGAAATGT  737

seq1  CACAGTTTTTGAAAATCATTTTCATTTTATCTTCCATTTACTAGAAAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTTTGAAAATCATTTTCATTTTATCTTCCATTTACTAGAAAAAT  787

seq1  TGAAGGATTCATTCAATTTGGTGGGTGTAGGGTAAAAATTATTTCACATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATTCATTCAATTTGGTGGGTGTAGGGTAAAAATTATTTCACATT  837

seq1  ATGCAAGTATCTAGTTTAGGCAATAATTGTAGCTTAATTCTCTACTGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGTATCTAGTTTAGGCAATAATTGTAGCTTAATTCTCTACTGAGA  887

seq1  GTCCATCATTACCGAGTATTTAGCAAATTTGAGCATATTTAATGGAACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCATTACCGAGTATTTAGCAAATTTGAGCATATTTAATGGAACAT  937

seq1  TAAAGTGGGTTTTGTGATGTTATAAAGATAGTAACATAATTCTTATTACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGGGTTTTGTGATGTTATAAAGATAGTAACATAATTCTTATTACA  987

seq1  GTGGGTGTCTATGCATAAAGAAGACAGCAACATGAAGCTGAGATTGATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTCTATGCATAAAGAAGACAGCAACATGAAGCTGAGATTGATTC  1037

seq1  CCATTGGTACTGAATCAGAACTCATAGAAACAAGTAAATCTCCTTGGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGTACTGAATCAGAACTCATAGAAACAAGTAAATCTCCTTGGAAA  1087

seq1  TTATCACCTATCAGGTCACCATCACACCAAGGTGAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACCTATCAGGTCACCATCACACCAAGGTGAGAATTC  1128