BAC Information

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BAC

Clone NameB6Ng01-017D01
Chromosome10 (Build37)2 (Build37)
Map Location 104,053,639 - 104,054,580139,014,373 - 139,015,354
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017D01.bB6Ng01-017D01.g
ACCDH850944DH850945
length1,146980
definitionDH850944|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D01, 5' end.DH850945|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,639 - 104,054,580)(139,014,373 - 139,015,354)
sequence
gaattcttattatctcagtctggccttttacccatccagcatcactgggt
tcagtagtgagatactcccaatattttggaacagtctcggtgacttcata
ttctttttgttttctttttgtttctatagtgtgctttttgtatcttttag
cttggatatctcttatttagcagtctactctacagtgctcattttcagta
caactaagagagaaggaaacaaattgctatcataccaacaacaccagact
ccttagagcatgtagaaatccgcttacgtcaaatctaagtggatcaagga
acttcacataaaaccagagacactgaaacttatagaggagaaagtgggga
aaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagca
atggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaact
ccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagactac
caacagattgggaaaggatctttacctatcctaaatcagataggggacta
atatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaa
taaccccattaaaaaatggggctcagaactgaacaaagaattctcacctg
aggaataccgaatggcagagaggcacctgaaaaaaatgttcaacatcctt
aatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacac
cagtcagaatggctaagatcaaaaattcatgtgacagcagatgctggcgt
ggatgtggagaaagaggaacactcctccattgttggtgggattgcaggct
tgtacaaccactctggaaatcagtctggcggttcctcagaaattggacat
agtactaccggaggatccagcaatacctctcctgggcatatatccagaag
atgccccaactggtagaaggacacatgctccactatgttcatagaagcct
tacttatatagccagaagctggaaagaacccagatgcccctcaacagaga
atgcatacagaaaatgtggtacatctaccaatgggagtactactcaggct
atttaaaaggatgatttatgaaattcctagccaattgatggacctg
gaattcagcatagtgacacactattggtttattcaaacatcagcaaaaag
attacatgtcagcaaaagaatacatgcagttccaggtgtcagggttctgt
gagttgctgactccgttcagatagccctgttatgtcctcacattcctctt
tatctttatggtcaagctgttcctaggaatgctttaacaacggggcatgc
ccaggtttgcttttctttgttctcagccccaggcagcctctaggctcaca
aacaaccagcaatttctgagtactttatatgacttacaggtctttaaatt
tcatctttctttcagaatcaagtgattcagactatgttatggtgtggagg
gataaaacattaaaaccatgatacatggaagatggaatgatggtcatcag
gaaaggatttgcttgctcattttgcataagaaagacaaaatacaatttct
gaccatggacaacacctaaggacctattcttttcctagaatggatgggat
gggaagataaccacacactaggtaactgatgctagtcattgcaaaaggaa
gtctttcagcagtttaaacactgtgtggttgtattttatttaatatgggg
tcccaaaaaatcattaagtttctaataaaagctgagttacttctcagatg
acttgaagatatcaggtaaaatattatatcagagatttctcatatcatca
gaagttgagataagtaaattttagttttaaaaaatgccttttttacattc
aaataaaatcaacaaattatttgctttaaacataagaacagcaatgagat
ttgcttattaataatttgtacatatcctttccatgtatcttgacaatgat
ttaaaaaactctacctatgcaataaatcagagtcagatactccagaagga
aattctaacgaagtcttttcttatatgataatcaaataaggctggcatct
gcagtgtatcactgggagaaaatgaagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053639_104054580
seq2: B6Ng01-017D01.b_468_1193 (reverse)

seq1  CAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCATTTACATTTAATTTAATTAATGTAATTACAATTAATTAATTTATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AATTAAATAATTTAATAATTTAATTGATAAATTAATTTAATTAATTAATT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAATTAATTAAATTAAATAATAATTTAATAATAAATTAAATATTTTAAAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTAATAATAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATTAAT  250
                      | ||  || | ||   ||  | ||||| || || 
seq2  ---------------CAGGTCCATCAATTGGCTA--GGAATTTCATAAA-  32

seq1  GTAATTACATTACAT----TTAATAG--CT-CCATTGTGTAAATGTACCA  293
       | ||    ||| ||    | | |||  || |||||| ||| ||||||||
seq2  -TCATCCTTTTAAATAGCCTGAGTAGTACTCCCATTG-GTAGATGTACCA  80

seq1  CATTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGC  343
      ||||||||||||  ||| ||||||||||||||||||||||||||||||||
seq2  CATTTTCTGTATGCATT-CTCTGTTGAGGGGCATCTGGGTTCTTTCCAGC  129

seq1  TCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCC  393
      | ||||||| ||||| ||||||| ||||||| ||||||||||||||||||
seq2  TTCTGGCTA-TATAAGTAAGGCTTCTATGAACATAGTGGAGCATGTGTCC  178

seq1  TTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGC  443
      ||| |||| ||||||||||||||||||||||||||||| |||||||||||
seq2  TTC-TACCAGTTGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGC  227

seq1  TGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGG  493
      ||||||||||||||||||||||||||| ||||||| |||||||||||| |
seq2  TGGATCCTCCGGTAGTACTATGTCCAA-TTTCTGAGGAACCGCCAGACTG  276

seq1  ATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGT  326

seq1  GTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTT  593
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACATGAATTTTT  376

seq1  GATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGA  426

seq1  TTTGCATTTCCCTGATGATTAAGGATGTTGAACA-TTTTTTCAGGTGCTT  692
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTTCAGGTGCCT  476

seq1  CTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGC  526

seq1  CCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGT  792
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGT  576

seq1  TCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGGATAGGTAAA  842
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAA  626

seq1  GATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTT  892
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  GATCCTTTCCCAATCTGTTGGTAGTCTTTTTGTCTTATTGACGGTGTCTT  676

seq1  TTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAACTCTC  942
      ||||||||||||| ||||| | ||| || ||||||||||| |||| ||||
seq2  TTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTC  726

seq1: chr2_139014373_139015354
seq2: B6Ng01-017D01.g_68_1047

seq1  GAATTCAGCATAGTGACACACTATTGGTTTATTCAAACATCAGCAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGTGACACACTATTGGTTTATTCAAACATCAGCAAAAAG  50

seq1  ATTACATGTCAGCAAAAGAATACATGCAGTTCCAGGTGTCAGGGTTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTCAGCAAAAGAATACATGCAGTTCCAGGTGTCAGGGTTCTGT  100

seq1  GAGTTGCTGACTCCGTTCAGATAGCCCTGTTATGTCCTCACATTCCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTGACTCCGTTCAGATAGCCCTGTTATGTCCTCACATTCCTCTT  150

seq1  TATCTTTATGGTCAAGCTGTTCCTAGGAATGCTTTAACAACGGGGCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATGGTCAAGCTGTTCCTAGGAATGCTTTAACAACGGGGCATGC  200

seq1  CCAGGTTTGCTTTTCTTTGTTCTCAGCCCCAGGCAGCCTCTAGGCTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTGCTTTTCTTTGTTCTCAGCCCCAGGCAGCCTCTAGGCTCACA  250

seq1  AACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTTAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTTAAATT  300

seq1  TCATCTTTCTTTCAGAATCAAGTGATTCAGACTATGTTATGGTGTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCTTTCAGAATCAAGTGATTCAGACTATGTTATGGTGTGGAGG  350

seq1  GATAAAACATTAAAACCATGATACATGGAAGATGGAATGATGGTCATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACATTAAAACCATGATACATGGAAGATGGAATGATGGTCATCAG  400

seq1  GAAAGGATTTGCTTGCTCATTTTGCATAAGAAAGACAAAATACAATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATTTGCTTGCTCATTTTGCATAAGAAAGACAAAATACAATTTCT  450

seq1  GACCATGGACAACACCTAAGGACCTATTCTTTTCCTAGAATGGATGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGACAACACCTAAGGACCTATTCTTTTCCTAGAATGGATGGGAT  500

seq1  GGGAAGATAACCACACACTAGGTAACTGATGCTAGTCATTGCAAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATAACCACACACTAGGTAACTGATGCTAGTCATTGCAAAAGGAA  550

seq1  GTCTTTCAGCAGTTTAAACACTGTGTGGTTGTATTTTATTTAATATGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAGCAGTTTAAACACTGTGTGGTTGTATTTTATTTAATATGGGG  600

seq1  TCCCAAAAAATCATTAAGTTTCTAATAAAAGCTGAGTTACTTCTCAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAAATCATTAAGTTTCTAATAAAAGCTGAGTTACTTCTCAGATG  650

seq1  ACTTGAAGATATCAGGTAAAATATTATATCAGAGATTTCTCATATCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGATATCAGGTAAAATATTATATCAGAGATTTCTCATATCATCA  700

seq1  GAAGTTGAGATAAGTAAATTTTAGTTTTAAAAAATGCCTTTTTAACATTC  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAGTTGAGATAAGTAAATTTTAGTTTTAAAAAATGCCTTTTTTACATTC  750

seq1  AAATAAAATCAACAAATTATTTGCTTTAAACATAAGAACAGCAATGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATAAAATCAACAAATTATTTGCTTTAAACATAAGAACAGCAATGAGAT  800

seq1  TTGCTTATTAATAA-TTGTACATATCCTTTCCCATGTATCTTGAACAATG  849
      |||||||||||||| ||||||||||||||| |||||||||||| ||||||
seq2  TTGCTTATTAATAATTTGTACATATCCTTT-CCATGTATCTTG-ACAATG  848

seq1  AGTTTAAAAAACTCTACCTATGCAATAAAATCAGAGTCAGAATACTCCAG  899
      | |||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  A-TTTAAAAAACTCTACCTATGCAAT-AAATCAGAGTCAG-ATACTCCAG  895

seq1  AA-GAAATTCTCACGAAGTC-TTTCTTATATGAT-ATCAAATAAGGCTGG  946
      || |||||||| |||||||| ||||||||||||| |||||||||||||||
seq2  AAGGAAATTCTAACGAAGTCTTTTCTTATATGATAATCAAATAAGGCTGG  945

seq1  CATCTTGCAGTGGTATCACT-GGAGAAAATGAAGCTC  982
      |||| |||||| |||||||| ||||||||||||||||
seq2  CATC-TGCAGT-GTATCACTGGGAGAAAATGAAGCTC  980