BAC Information

Click to search

BAC

Clone NameB6Ng01-017E08
Chromosome10 (Build37)
Map Location 18,345,966 - 18,515,210
singlet/doubletdoublet
Overlap geneD10Bwg1379e, EG237300
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729
Downstream genePerp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017E08.bB6Ng01-017E08.g
ACCDH851002DH851003
length796520
definitionDH851002|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E08, 5' end.DH851003|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,514,648 - 18,515,210)(18,345,966 - 18,346,489)
sequence
gaattcattgactgatatagtcataaaaagaaatatttataaataggtat
actatatacacatgtattttgttgcttggtcagctgccagggcctaatca
aaatagcatgtacagcatgaggttttgttttcaaacatcctctctaaagg
gagcagggcttgttgaaatagatacttttggggacaagaaataaaaccca
acctacaaaattccactatatattttatctgagctcaaattgatataatg
attaaatatgagagaagaaagatgacatttatatagaataattaaaaaat
aatccaagggacctttgatcccaaggaaaaattcttgtttgaaatatttg
ctgagttcctcccagagtacagttcagtaaagggagaagagaaactgagc
aacttcaccttagccaggtgactacaataacgtcacagtgaatgcaccac
ccatctgcaatgaaaatgaacattcacctctgcagccttcctcctcagta
ctgacagtctcagtctcagctgaagaaaacatagatgaacccaactgaga
cactctgcaaaatgtctgaggagtactgaccaaagctgtcagtgtcatca
aaacaaggacaacctgggagacagccaccatacagaggagcctatgggac
ctgaaggggaggggtaggacacgggcaggatagaaaagtcaaggatcagc
atggtgggtaataaggggtagatgtggctttcacggatccaggtaaatgt
ggcacagtaagaagctcaaactaggatgggctggagagatggctca
acatatatttgcttgcgtgtcacctgaatctcttccctttgttttttttt
gtaaggccaaggcaaaacatcaggttatcagcttctctttctcactccac
tttgctccaggctgctacatcctggtcctttcacatgttcctttcacgat
ggttggtgtagggggaggtgctgatactaaggtccggttccctaactagt
tcttgattttgtcagtgaagaaggctttccaagttccaggaggaaaaggt
agatggagggaaaaagagggtcttttctgcacgcttttaaacaagaaagc
agcagcagtcatgttcggcctcagggcagctagggcctgcaacttctgct
atgggcaggggccaaggaggttggtgggggctagctgatacagggtagct
aataagtttagggcaggaggaaaaaatggggataattgatgagggcatgc
ctttccaggcaggagattctgtgcccagaaattgtgctagccagcaagtt
ctaaagtaataaagccgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18514648_18515210
seq2: B6Ng01-017E08.b_283_846 (reverse)

seq1  TGAGCCATCTCTCCAGCCCATCCTAGTTTGAGCTTCTTACTGTGCCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCTCCAGCCCATCCTAGTTTGAGCTTCTTACTGTGCCACAT  50

seq1  TTACCTGGATCCGTG-AAGCCACATCTACCCCTTATTACCCACCATGCTG  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTACCTGGATCCGTGAAAGCCACATCTACCCCTTATTACCCACCATGCTG  100

seq1  ATCCTTGACTTTTCTATCCTGCCCGTGTCCTACCCCTCCCCTTCAGGTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGACTTTTCTATCCTGCCCGTGTCCTACCCCTCCCCTTCAGGTCC  150

seq1  CATAGGCTCCTCTGTATGGTGGCTGTCTCCCAGGTTGTCCTTGTTTTGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTCCTCTGTATGGTGGCTGTCTCCCAGGTTGTCCTTGTTTTGAT  200

seq1  GACACTGACAGCTTTGGTCAGTACTCCTCAGACATTTTGCAGAGTGTCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGACAGCTTTGGTCAGTACTCCTCAGACATTTTGCAGAGTGTCTC  250

seq1  AGTTGGGTTCATCTATGTTTTCTTCAGCTGAGACTGAGACTGTCAGTACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGTTCATCTATGTTTTCTTCAGCTGAGACTGAGACTGTCAGTACT  300

seq1  GAGGAGGAAGGCTGCAGAGGTGAATGTTCATTTTCATTGCAGATGGGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAAGGCTGCAGAGGTGAATGTTCATTTTCATTGCAGATGGGTGG  350

seq1  TGCATTCACTGTGACGTTATTGTAGTCACCTGGCTAAGGTGAAGTTGCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCACTGTGACGTTATTGTAGTCACCTGGCTAAGGTGAAGTTGCTC  400

seq1  AGTTTCTCTTCTCCCTTTACTGAACTGTACTCTGGGAGGAACTCAGCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCTTCTCCCTTTACTGAACTGTACTCTGGGAGGAACTCAGCAAA  450

seq1  TATTTCAAACAAGAATTTTTCCTTGGGATCAAAGGTCCCTTGGATTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAACAAGAATTTTTCCTTGGGATCAAAGGTCCCTTGGATTATTT  500

seq1  TTTAATTATTCTATATAAATGTCATCTTTCTTCTCTCATATTTAATCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATTCTATATAAATGTCATCTTTCTTCTCTCATATTTAATCATT  550

seq1  ATATCAATTTGAGC  563
      ||||||||||||||
seq2  ATATCAATTTGAGC  564

seq1: chr10_18345966_18346489
seq2: B6Ng01-017E08.g_36_560

seq1  GAATTCACATATA-TTGCTTGCGTGTCACCTGAATCTCTTCCCTTTGTTT  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATATTTGCTTGCGTGTCACCTGAATCTCTTCCCTTTGTTT  50

seq1  TTTTTTGTAAGGCCAAGGCAAAACATCAGGTTATCAGCTTCTCTTTCTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTAAGGCCAAGGCAAAACATCAGGTTATCAGCTTCTCTTTCTCA  100

seq1  CTCCACTTTGCTCCAGGCTGCTACATCCTGGTCCTTTCACATGTTCCTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTTGCTCCAGGCTGCTACATCCTGGTCCTTTCACATGTTCCTTT  150

seq1  CACGATGGTTGGTGTAGGGGGAGGTGCTGATACTAAGGTCCGGTTCCCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATGGTTGGTGTAGGGGGAGGTGCTGATACTAAGGTCCGGTTCCCTA  200

seq1  ACTAGTTCTTGATTTTGTCAGTGAAGAAGGCTTTCCAAGTTCCAGGAGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTCTTGATTTTGTCAGTGAAGAAGGCTTTCCAAGTTCCAGGAGGA  250

seq1  AAAGGTAGATGGAGGGAAAAAGAGGGTCTTTTCTGCACGCTTTTAAACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGATGGAGGGAAAAAGAGGGTCTTTTCTGCACGCTTTTAAACAA  300

seq1  GAAAGCAGCAGCAGTCATGTTCGGCCTCAGGGCAGCTAGGGCCTGCAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCAGCAGTCATGTTCGGCCTCAGGGCAGCTAGGGCCTGCAACT  350

seq1  TCTGCTATGGGCAGGGGCCAAGGAGGTTGGTGGGGGCTAGCTGATACAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATGGGCAGGGGCCAAGGAGGTTGGTGGGGGCTAGCTGATACAGG  400

seq1  GTAGCTAATAAGTTTAGGGCAGGAGGAAAAAATGGGGATAATTGATGAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAATAAGTTTAGGGCAGGAGGAAAAAATGGGGATAATTGATGAGG  450

seq1  GCATGCCTTTCCAGGCAGGAGATTCTGTGCCCAGAAATTGTGCTAGCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTTTCCAGGCAGGAGATTCTGTGCCCAGAAATTGTGCTAGCCAG  500

seq1  CAAGTTCTAAAGTAATAAAGCCGTC  524
      |||||||||||||||||||||||||
seq2  CAAGTTCTAAAGTAATAAAGCCGTC  525