BAC Information

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BAC

Clone NameB6Ng01-018F10
Chromosome10 (Build37)12 (Build37)
Map Location 106,532,265 - 106,533,19132,631,616 - 32,631,842
singlet/doubletsingletsinglet
Overlap gene8430416H19Rik
Upstream geneEG639162, Ppfia2, Olfr1556-ps1
Downstream geneLin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018F10.bB6Ng01-018F10.g
ACCDH851768DH851769
length927690
definitionDH851768|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F10, 5' end.DH851769|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,532,265 - 106,533,191)(32,631,616 - 32,631,842)
sequence
gaattcaagtagaaaaaaaagaagatttggttcaatgtggaagaaagatg
ttacagttaacttgatgtaaagggtcagaagtaaatagtaagaccaaata
caataaaaatttaaattctgtgtttattaaaatgaaccataagccaaatg
gacatagtaaagtagttccttaaggatgagcaaacttcttccttcaacta
gtctccccatggcagcatgtacgatatgttaggaacaggctcctccctgt
actgactcagaaaataaaatgtcatgaggtcacagagaagtagattgcaa
agttgaacaagttattttttaagagagcacctataactcatgatgccaca
gagattccaagctggcaccctgcaagagattgcagaataatcccgtgaga
taaaaagctggctaatagcaaaatgtattcatcagtactgatgtgtgttt
gttggaagaggaagaagatgccttccagaatttaatcccagtgatggtga
gaatcatgaatcaatgaaggaaggaaagaacaggcaaagggaagatgaga
aaagcaatcctggcagcatcaggaaggagtctaactcatttacttgttgt
tataatattcttaattactggaagtgaaaagcgggtcagatatatagaga
tgaaaataaatgtgctaccatgtaatgtgcagtctcctagaattgcttgc
tgtatggggttataactcatgagaattatggaaggagatctgttagggtc
agggagagccctggaaattacagccaatatagctgagaagtaacagagat
gagtggaaacaagaggcttacttcaatatttccacagctaaaaatagaaa
cagaggggtgtccaggggctactttgcacaaatccatgatgttggatatg
atttaatttgcattttaagtacagagt
gaattcatgaaattcctaggcaaatggatggacctggagggcatcatcct
gagtgagtcaacccaatcacaaaagaactcacatgatatgtatcactgat
cagtggatattagcccagaaacagaatacccaagatgcaagatacaatct
gcaaaacacataaaactcaagaagagcgaagaccaaagtgtggaaatttt
gccccttcttagaattgggaacaaaacacccatggaaggagttacagaga
cgaagtttggagctgagacaaaaggattgaccatctagagactgccatac
tcagggatccatcccataatcagcctccaaactctgacaccattgcacac
actagcaagattttgctgaaaggaccctgatataactgtctcttgtgagg
ctatgctggggcctaacaaacacagaagtggatgctcacagtcagctatt
ggatagatcacagggcccccaatggaggagctagagaaagttctcaagga
gctaaaggggtctgcaaccctataggtagaacaacaatataaactaatca
gtaccccccggagctcgtgtctctagctgcatatatatcagaagatggcc
tagtcggccatcattgggaagagaggcccattggtcttgcaaactttata
tgcctcagtacaggggaattccagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106532265_106533191
seq2: B6Ng01-018F10.b_43_969

seq1  GAATTCAAGTAGAAAAAAAAGAAGATTTGGTTCAATGTGGAAGAAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAGAAAAAAAAGAAGATTTGGTTCAATGTGGAAGAAAGATG  50

seq1  TTACAGTTAACTTGATGTAAAGGGTCAGAAGTAAATAGTAAGACCAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTAACTTGATGTAAAGGGTCAGAAGTAAATAGTAAGACCAAATA  100

seq1  CAATAAAAATTTAAATTCTGTGTTTATTAAAATGAACCATAAGCCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAATTTAAATTCTGTGTTTATTAAAATGAACCATAAGCCAAATG  150

seq1  GACATAGTAAAGTAGTTCCTTAAGGATGAGCAAACTTCTTCCTTCAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTAAAGTAGTTCCTTAAGGATGAGCAAACTTCTTCCTTCAACTA  200

seq1  GTCTCCCCATGGCAGCATGTACGATATGTTAGGAACAGGCTCCTCCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCCATGGCAGCATGTACGATATGTTAGGAACAGGCTCCTCCCTGT  250

seq1  ACTGACTCAGAAAATAAAATGTCATGAGGTCACAGAGAAGTAGATTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTCAGAAAATAAAATGTCATGAGGTCACAGAGAAGTAGATTGCAA  300

seq1  AGTTGAACAAGTTATTTTTTAAGAGAGCACCTATAACTCATGATGCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAACAAGTTATTTTTTAAGAGAGCACCTATAACTCATGATGCCACA  350

seq1  GAGATTCCAAGCTGGCACCCTGCAAGAGATTGCAGAATAATCCCGTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCAAGCTGGCACCCTGCAAGAGATTGCAGAATAATCCCGTGAGA  400

seq1  TAAAAAGCTGGCTAATAGCAAAATGTATTCATCAGTACTGATGTGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCTGGCTAATAGCAAAATGTATTCATCAGTACTGATGTGTGTTT  450

seq1  GTTGGAAGAGGAAGAAGATGCCTTCCAGAATTTAATCCCAGTGATGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGAGGAAGAAGATGCCTTCCAGAATTTAATCCCAGTGATGGTGA  500

seq1  GAATCATGAATCAATGAAGGAAGGAAAGAACAGGCAAAGGGAAGATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGAATCAATGAAGGAAGGAAAGAACAGGCAAAGGGAAGATGAGA  550

seq1  AAAGCAATCCTGGCAGCATCAGGAAGGAGTCTAACTCATTTACTTGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCCTGGCAGCATCAGGAAGGAGTCTAACTCATTTACTTGTTGT  600

seq1  TATAATATTCTTAATTACTGGAAGTGAAAAGCGGGTCAGATATATAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTCTTAATTACTGGAAGTGAAAAGCGGGTCAGATATATAGAGA  650

seq1  TGAAAATAAATGTGCTACCATGTAATGTGCAGTCTCCTAGAATTGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAATGTGCTACCATGTAATGTGCAGTCTCCTAGAATTGCTTGC  700

seq1  TGTATGGGGTTATAACTCATGAGAATTATGGAAGGAGATCTGTTAGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGGTTATAACTCATGAGAATTATGGAAGGAGATCTGTTAGGGTC  750

seq1  AGGGAGAGCCCTGGAAATTACAGCCAATATAGCTGAGAAGTAACAGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGCCCTGGAAATTACAGCCAATATAGCTGAGAAGTAACAGAGAT  800

seq1  GAGTGGAAACAAGAGGCTTAC-TCAATATTTCCACAGCTAAAAA-AGAAA  848
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  GAGTGGAAACAAGAGGCTTACTTCAATATTTCCACAGCTAAAAATAGAAA  850

seq1  CAGAGGGGTGTCCAGGGGCTACTTTGCACAAATCCATGATGTTGGATCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGAGGGGTGTCCAGGGGCTACTTTGCACAAATCCATGATGTTGGAT-AT  899

seq1  GATATAAGTTTGCATTTTAAGTACAGAGT  927
      ||| ||| |||||||||||||||||||||
seq2  GATTTAA-TTTGCATTTTAAGTACAGAGT  927

seq1: chr12_32631616_32631842
seq2: B6Ng01-018F10.g_482_755 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGAATTCCCCTGTACTGAGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| ||||||||||||| ||| |||                ||||
seq2  GCAAGACCAATGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCC-GGGGGTACTGGTCAGTTC  102
      ||||| ||| ||||||||||||||||||||| |||||||||| | |||| 
seq2  TGATATATATGCAGCTAGAGACACGAGCTCCGGGGGGTACTGATTAGTTT  150

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTA  152
      ||| |||||||| ||||||||||||||||||||||||||||||||| | |
seq2  ATATTGTTGTTCTACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGAGAA  200

seq1  CTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGA  202
      ||||||||| |||||||||||||| ||||||||| |||||||||||||||
seq2  CTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGAT-CTATCCAATAGCTGA  249

seq1  CTGTGAGCATCCACTTCTGTGTTTG  227
      |||||||||||||||||||||||||
seq2  CTGTGAGCATCCACTTCTGTGTTTG  274