BAC Information

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BAC

Clone NameB6Ng01-018G04
Chromosome3 (Build37)10 (Build37)
Map Location 62,665,644 - 62,666,471104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
Downstream geneLOC676984, LOC666967, Mme, Plch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018G04.bB6Ng01-018G04.g
ACCDH851804DH851805
length1,012997
definitionDH851804|Mus musculus domesticus DNA, BAC clone: B6Ng01-018G04, 5' end.DH851805|Mus musculus domesticus DNA, BAC clone: B6Ng01-018G04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,665,644 - 62,666,471)(104,053,903 - 104,054,363)
sequence
gaattcaaaagagccactatttttaattggctagtgtgatattactgtat
ggagcatttgttgctcttataactaatgttctacttaggcaataacacta
aatttttaccaagtacaatatctaggaactgttttatgaactacacattt
aatactccacttcaaagtcccatttggatagtgcaagtagttcaattgaa
aaatatacaaaatgatatgagatgtataaatcctaattcagtaagacaaa
aaaaaatggaaaatcaagacaatgttaattctctggaaataattttaacc
ctatagaaatggcacttgatgaaagcaagttaaatgaaataccagaaaga
gaactcagaataactaaatgcctacattaataagtcataaatctcaaata
tataacccaatgatactgtttagagttctggaagcagaaaaatgagccaa
actccaggtcagccgtctaaaagaaattatcaagataaggaaagaaactt
ctgaaatagaaacaataaaaacaatataaagaacaaatgagaaaaataat
tggtcctttgaaaagataaccagtataaacaagcctttaggcaaagtaac
aagcagaaaaatgacccaaattaatgaactttgagacaaaaataatggag
tcattgcaacagataccatgaaattgtatctgttgtagattttactaaaa
aaatttacatgaaattgtagatttacatgaaattgtagattttactaaaa
aaaattccaattaactaaaagtttaaaataattttaggtgcatgtgtctt
accaaaattaaactaagatagggttgaaatgatgatttaaaatctctcaa
ccaaaaaaaatgtcaggtctagatggattcactagtaaattttatcaact
tcaatctcacacctgaaaaagatgggctgagggaggacataagcaaacac
tttctacagcactaccattaccctaggcccaaataaatgagattcacaca
aaagaaatttta
gaattctcacctgaggaataccaaatggctgagaaccacctgaaaaaatg
ttcatcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaatttcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccattctggaaatcagtctggtgcttactca
gaaaactggatatagtactactggaggatcctgcaatacctctcttgggc
atataccaataagatattccaactggtaaggacacatgctccactatgtt
catagcagccttatttataatggccataagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacccaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatggacctggagggtatcatcctgagttaggtaacccaatcacaaagga
acttaggaacttacacaatatgtactcactgataagtggatattagccca
gaaacttaggatacccaagatataagatacaatttgctaaaagcatgaaa
ctcaagaagaatgaagactgaagtgtggacactatgccccttcttagaat
tgggaacaaaacacccatggaaggagttacagagacaaagtttggagctg
tgtcaaaaggatggaccatctatagcctgccatgtccagagttccatccc
ataatcagcttccaaactctgacaccattgcatacactagcaagattttg
ctgaaaggacccagatatagctgtctcttgtgagactaggccggggtcta
gcaaacacagaagtggatgctcacagtcagctatggatggatcacaggct
cccaatggagagctagagaagtacccaaggagctaaagggatctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_62665644_62666471
seq2: B6Ng01-018G04.b_44_871

seq1  GAATTCAAAAGAGCCACTATTTTTAATTGGCTAGTGTGATATTACTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGAGCCACTATTTTTAATTGGCTAGTGTGATATTACTGTAT  50

seq1  GGAGCATTTGTTGCTCTTATAACTAATGTTCTACTTAGGCAATAACACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTTGTTGCTCTTATAACTAATGTTCTACTTAGGCAATAACACTA  100

seq1  AATTTTTACCAAGTACAATATCTAGGAACTGTTTTATGAACTACACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTACCAAGTACAATATCTAGGAACTGTTTTATGAACTACACATTT  150

seq1  AATACTCCACTTCAAAGTCCCATTTGGATAGTGCAAGTAGTTCAATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCCACTTCAAAGTCCCATTTGGATAGTGCAAGTAGTTCAATTGAA  200

seq1  AAATATACAAAATGATATGAGATGTATAAATCCTAATTCAGTAAGACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACAAAATGATATGAGATGTATAAATCCTAATTCAGTAAGACAAA  250

seq1  AAAAAATGGAAAATCAAGACAATGTTAATTCTCTGGAAATAATTTTAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGGAAAATCAAGACAATGTTAATTCTCTGGAAATAATTTTAACC  300

seq1  CTATAGAAATGGCACTTGATGAAAGCAAGTTAAATGAAATACCAGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAATGGCACTTGATGAAAGCAAGTTAAATGAAATACCAGAAAGA  350

seq1  GAACTCAGAATAACTAAATGCCTACATTAATAAGTCATAAATCTCAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAATAACTAAATGCCTACATTAATAAGTCATAAATCTCAAATA  400

seq1  TATAACCCAATGATACTGTTTAGAGTTCTGGAAGCAGAAAAATGAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCAATGATACTGTTTAGAGTTCTGGAAGCAGAAAAATGAGCCAA  450

seq1  ACTCCAGGTCAGCCGTCTAAAAGAAATTATCAAGATAAGGAAAGAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGTCAGCCGTCTAAAAGAAATTATCAAGATAAGGAAAGAAACTT  500

seq1  CTGAAATAGAAACAATAAAAACAATATAAAGAACAAATGAGAAAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAGAAACAATAAAAACAATATAAAGAACAAATGAGAAAAATAAT  550

seq1  TGGTCCTTTGAAAAGATAACCAGTATAAACAAGCCTTTAGGCAAAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTTGAAAAGATAACCAGTATAAACAAGCCTTTAGGCAAAGTAAC  600

seq1  AAGCAGAAAAATGACCCAAATTAATGAACTTTGAGACAAAAATAATGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAAAATGACCCAAATTAATGAACTTTGAGACAAAAATAATGGAG  650

seq1  TCATTGCAACAGATACCATGAAATTGTATCTGTTGTAGATTTTACTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAACAGATACCATGAAATTGTATCTGTTGTAGATTTTACTAAAA  700

seq1  AAATTTACATGAAATTGTAGATTTACATGAAATTGTAGATTTTACTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACATGAAATTGTAGATTTACATGAAATTGTAGATTTTACTAAAA  750

seq1  AAAATTCCAATTAACTAAAAGTTTAAAATAATTTTAGGTGCATGTGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCAATTAACTAAAAGTTTAAAATAATTTTAGGTGCATGTGTCTT  800

seq1  ACCAAAATTAAACTAAGATAGGGTTGAA  828
      ||||||||||||||||||||||||||||
seq2  ACCAAAATTAAACTAAGATAGGGTTGAA  828

seq1: chr10_104053903_104054363
seq2: B6Ng01-018G04.g_68_535 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||| |||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGGGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||||||||||||||||||  |||| |||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTATGGCCATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||   |||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC---CTTACCAGT  147

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||   ||||| | | ||||||||||  ||||||||||| ||||||||| 
seq2  TGGAATATCTTATTGGTATATGCCCAAGAGAGGTATTGCAGGATCCTCCA  197

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||| |||| ||||||||  || | |||||| |||||||||| |
seq2  GTAGTACTATATCCAGTTTTCTGAGTAAGCACCAGACTGATTTCCAGAAT  247

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  297

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAAATTTTGATCTTAGCCA  347

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCT  397

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||||||| |||||||||||||||||| ||||| |||||| |
seq2  CTGATGATTAAGGATGATGAACATTTTTTCAGGTGGTTCTCAGCCATTTG  447

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  468