BAC Information

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BAC

Clone NameB6Ng01-018J12
Chromosome10 (Build37)
Map Location 42,390,631 - 42,554,665
singlet/doubletdoublet
Overlap geneOstm1, Sec63
Upstream geneEG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389
Downstream geneScml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018J12.bB6Ng01-018J12.g
ACCDH851947DH851948
length1,132451
definitionDH851947|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J12, 5' end.DH851948|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,390,631 - 42,391,758)(42,554,210 - 42,554,665)
sequence
gaattcttctgacaaatagagattccccacagatactttaaagaacagcc
aagttatactcatgcaagaatttatcaaggcctaggaaatagggggtttg
tggtattgcattattcatgagaaggtctgctagagcagaaccccctagtg
ctagctttcacaaggctcaaaggagtagcacaaattgtgactagggtgtg
aaatccttacctgtcattagctgaccctaggcagggctgttttatcttta
ctgtaaatattacctggttcttgtaagtccttttgaagtcattcctctgt
tttgtgtcagataacttcaatgtattttgcctgccgtgacattctacccc
tttgttttctgtattatataagactggtgttcactttgtgaaaatacact
cagattctacacactctctcgtgtctcttctgtttgtcattcgctgactc
cttcgcccacttgccaccagagacccgttccacacagataggagacccaa
aaagggaatagtctgcggcaacatcacagatgacaacccaagagaagttg
tgtcacagaaccccacttttacttaaagtttgcttcctggaaactctgac
atcccccaatatcacttgcagtagcggggtttagagaaagagcaattagg
agtaatgctggactcacaatatggggccctgtgacccaaccctccgtcct
tctattagagagcatcactagctccattaccatccccacaggcctagcta
tcactacactgtttagctggactagttgccatggctacagagccactgtc
taatccaagatggtagtcatgttatgccccaaggaaaaatcgatactata
gcattaatacatttataactcacaaattcagcatgggcatggagaaaaga
aacttggctgtgcacacatgtcgggatgagctgcagctgcacaatctcca
aagcaatggggtctctcggtggtctgaaagctcccttgtgatagccagaa
cagccttctcaattgagctggtgtgtctgcatttttgtacagtaacagat
gagaacaatgctaagagagcgccattgaactgaacagactaagtcacacg
tgggagacttcccacgacaccctggattagaa
tactccacccttagtactgctaaacttaaaactccatgtgaaaaatgcgc
tcctgaggtgtctgtcactcctgacatttggtgggataccctgtcattaa
gtcagaacacttgaaagacacaggggcttgtcttgtgcaaagaaatactg
cagtagatcataacaccagtctcacccccactctcaaaggcacttctcag
ataatcacattaatcctgataatttccatcataatagatgcagacctgtg
aataggggtggggaggtggggcaggcgctcctagggatcgtgggaaaact
tacccacaagttctgaagccggagctttgagccaaagagggtgccttgaa
gcctgtcacatgggcatttctcctgccctctccattctccttgccactgc
cctgtgtgtttaatgtgttttcaagaggaacagtaagcttttgatgggaa
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42390631_42391758
seq2: B6Ng01-018J12.b_63_1173

seq1  ATTCCCCACAGATACTTTAAAGAACAGCCAAGTTATACTCATGCAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCACAGATACTTTAAAGAACAGCCAAGTTATACTCATGCAAGAAT  50

seq1  TTATCAAGGCCTAGGAAATAGGGGGTTTGTGGTATTGCATTATTCATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGGCCTAGGAAATAGGGGGTTTGTGGTATTGCATTATTCATGAG  100

seq1  AAGGTCTGCTAGAGCAGAACCCCCTAGTGCTAGCTTTCACAAGGCTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGCTAGAGCAGAACCCCCTAGTGCTAGCTTTCACAAGGCTCAAA  150

seq1  GGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGTCATTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGTCATTAGC  200

seq1  TGACCCTAGGCAGGGCTGTTTTATCTTTACTGTAAATATTACCTGGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTAGGCAGGGCTGTTTTATCTTTACTGTAAATATTACCTGGTTCT  250

seq1  TGTAAGTCCTTTTGAAGTCATTCCTCTGTTTTGTGTCAGATAACTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCCTTTTGAAGTCATTCCTCTGTTTTGTGTCAGATAACTTCAAT  300

seq1  GTATTTTGCCTGCCGTGACATTCTACCCCTTTGTTTTCTGTATTATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGCCTGCCGTGACATTCTACCCCTTTGTTTTCTGTATTATATAA  350

seq1  GACTGGTGTTCACTTTGTGAAAATACACTCAGATTCTACACACTCTCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGTTCACTTTGTGAAAATACACTCAGATTCTACACACTCTCTCG  400

seq1  TGTCTCTTCTGTTTGTCATTCGCTGACTCCTTCGCCCACTTGCCACCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCTGTTTGTCATTCGCTGACTCCTTCGCCCACTTGCCACCAGA  450

seq1  GACCCGTTCCACACAGATAGGAGACCCAAAAAGGGAATAGTCTGCGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGTTCCACACAGATAGGAGACCCAAAAAGGGAATAGTCTGCGGCAA  500

seq1  CATCACAGATGACAACCCAAGAGAAGTTGTGTCACAGAACCCCACTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGATGACAACCCAAGAGAAGTTGTGTCACAGAACCCCACTTTTA  550

seq1  CTTAAAGTTTGCTTCCTGGAAACTCTGACATCCCCCAATATCACTTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTTTGCTTCCTGGAAACTCTGACATCCCCCAATATCACTTGCAG  600

seq1  TAGCGGGGTTTAGAGAAAGAGCAATTAGGAGTAATGCTGGACTCACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGGGGTTTAGAGAAAGAGCAATTAGGAGTAATGCTGGACTCACAATA  650

seq1  TGGGGCCCTGTGACCCAACCCTCCGTCCTTCTATTAGAGAGCATCACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCCTGTGACCCAACCCTCCGTCCTTCTATTAGAGAGCATCACTAG  700

seq1  CTCCATTACCATCCCCACAGGCCTAGCTATCACTACACTGTTTAGCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTACCATCCCCACAGGCCTAGCTATCACTACACTGTTTAGCTGGA  750

seq1  CTAGTTGCCATGGCTACAGAGCCACTGTCTAATCCAAGATGGTAGTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGCCATGGCTACAGAGCCACTGTCTAATCCAAGATGGTAGTCATG  800

seq1  TTATGCCCCAAGGAAAAATCGATACTATAGCATTAATACATTTATAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCCCAAGGAAAAATCGATACTATAGCATTAATACATTTATAACTC  850

seq1  ACAAATTCAGCATGGGCATGGAGAAAAAGAAACTTGGCTGTGCACACCAT  900
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  ACAAATTCAGCATGGGCATGGAG-AAAAGAAACTTGGCTGTGCACA-CAT  898

seq1  GTCGGGATGAGCTGCAGCTGCCACAATCTCCAAAGCAATGGGGTCTCTCG  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTCGGGATGAGCTGCAGCTG-CACAATCTCCAAAGCAATGGGGTCTCTCG  947

seq1  GTGGTCTGAAAGCTCCCTGGTGATAAGCCAGAACAAGCCTTCTCAATATG  1000
      |||||||||||||||||| ||||| ||||||||| |||||||||||| ||
seq2  GTGGTCTGAAAGCTCCCTTGTGAT-AGCCAGAAC-AGCCTTCTCAAT-TG  994

seq1  AGCTGGTGTGTCTTGCATATTTGTTACAGTAACAGATGTAGAACATTGCT  1050
      |||||||||||| ||||| |||| |||||||||||||| |||||| ||||
seq2  AGCTGGTGTGTC-TGCATTTTTG-TACAGTAACAGATG-AGAACAATGCT  1041

seq1  ACAGAGAAGCGGCCATTAGACTGAACCAGACTAAGTCACACAGTGTGAGA  1100
      | |||| ||| ||||||  |||||| ||||||||||||||| ||| ||||
seq2  A-AGAG-AGC-GCCATTGAACTGAA-CAGACTAAGTCACAC-GTGGGAGA  1086

seq1  CTTCCCACCAGCACCCCTGGATTTAGAA  1128
      |||||||| | || ||||||| ||||||
seq2  CTTCCCACGA-CA-CCCTGGA-TTAGAA  1111

seq1: chr10_42554210_42554665
seq2: B6Ng01-018J12.g_67_522 (reverse)

seq1  TTCCCTTCAAAAGCTTACTGTTCCTCTTGACAACACATTAAACACACAGG  50
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCCCATCAAAAGCTTACTGTTCCTCTTGAAAACACATTAAACACACAGG  50

seq1  GCAGTGGCAAGGAGAATGGAGAGGGCAGGAGAAATGCCCATGTGACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCAAGGAGAATGGAGAGGGCAGGAGAAATGCCCATGTGACAGGC  100

seq1  TTCAAGGCACCCTCTTTGGCTCAAAGCTCCGGCTTCAGAACTTGTGGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCACCCTCTTTGGCTCAAAGCTCCGGCTTCAGAACTTGTGGGTA  150

seq1  AGTTTTCCCACGATCCCTAGGAGCGCCTGCCCCACCTCCCCACCCCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCCACGATCCCTAGGAGCGCCTGCCCCACCTCCCCACCCCTATT  200

seq1  CACAGGTCTGCATCTATTATGATGGAAATTATCAGGATTAATGTGATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCTGCATCTATTATGATGGAAATTATCAGGATTAATGTGATTAT  250

seq1  CTGAGAAGTGCCTTTGAGAGTGGGGGTGAGACTGGTGTTATGATCTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTGCCTTTGAGAGTGGGGGTGAGACTGGTGTTATGATCTACTG  300

seq1  CAGTATTTCTTTGCACAAGACAAGCCCCTGTGTCTTTCAAGTGTTCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTCTTTGCACAAGACAAGCCCCTGTGTCTTTCAAGTGTTCTGAC  350

seq1  TTAATGACAGGGTATCCCACCAAATGTCAGGAGTGACAGACACCTCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACAGGGTATCCCACCAAATGTCAGGAGTGACAGACACCTCAGGA  400

seq1  GCGCATTTTTCACATGGAGTTTTAAGTTTAGCAGTACTAAGGGTGGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATTTTTCACATGGAGTTTTAAGTTTAGCAGTACTAAGGGTGGAGTA  450

seq1  GAATTC  456
      ||||||
seq2  GAATTC  456