BAC Information

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BAC

Clone NameB6Ng01-018J14
Chromosome10 (Build37)
Map Location 36,600,587 - 36,767,255
singlet/doubletdoublet
Overlap geneHdac2
Upstream geneLOC667860, Hs3st5
Downstream geneMarcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018J14.bB6Ng01-018J14.g
ACCDH851951DH851952
length1,0801,080
definitionDH851951|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J14, 5' end.DH851952|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,600,587 - 36,601,448)(36,766,180 - 36,767,255)
sequence
gaattctatcagaccttcaaagaagacctaattctagttctcctcaaact
attccacaaaatagaaacagaaggttctctacccaatttattctatgaag
ccacaattactctgatacctaaaccatataaagacctaacaaagggacag
aacttcagaccaatttcccttatgaatatcaatgcaaaaatattcaataa
aattcttactaactgaatccaaaaacacatcaaatcaatcatccatcatg
atcaagtaggcttcatcccagggatgcagggatggtttaatatatggaaa
tccatcaatgtaatccactatataagcaaactcaaagacaaaaaacacat
gatcatctcattagatgctgagaaagtatttcacaaaatccaacacccat
ccatgataaaagtcttggaaagatcaggaaatcaaggcccatacctaaac
atgataaaagcaatctacagcaaaccagtagccaacatcaaactaaatgg
agagaagctggaagcaatcccactaaaatcagggactagacaaggctgcc
cactttctccctacctactcaatatagtacttgaagtcctagccagagca
attagacaacaaaaggaggttacggggatacaaattggaaaggaagaagt
caaaataccactattttgcagatgaagtgatagtttatataagtgatcct
aaaagttccaccagagaactccttaaacagcaagcggtcttagccactga
agcatactgtagcagctcgccttggttatctcagatcagtggtattcact
gggcaaggattatatgtttcccttctgagtatatgctaagtctaaaaaac
aaatttcttattttatggaccttcacatcagagtcacttagaaaaaaaaa
gtctgagaataggtgtgcttagacacttgaagaagtcttagaaggagtgt
ttgggcatttgggattttattatgggatgagaatgagactgttagtcttc
tagactcagaagaaaatctcagcagctgtcttaaagagaagctagaacat
gcagtgtcttgagatttgtgggctcatgga
gaattctgtgctcttcagaaagtttcctgataaaattagaaaactgtaaa
gagtaaaaaaagaaaaaataaaagttttggatattgatgtggaacgtctt
ttgtttcaggctcagtcttgtggagcacagtgttacagaagagtaccctg
cctgctcagccgactctgcaccacatccacatctacactccattcctggg
caggagagcatcctgcacttcagaggccacttcagaagcctcagctctgc
tcttagcatcatgcttgttttaacttgctgagcattgcgccaaggccaaa
catatcaccctcttcgtgcttgttaaagccatctgtatgaggctgtcatg
aggagctggagtaaaataatagtttccacatgtattactgtcttcatttt
aggtaaaaatatggtttcaaactttttttaatataaaaaatcatgaaaaa
attagaattagagtgtagatctaatctactaatttaaatttatttaccca
agactttatgagtactaacattatcttgggaaaaaatattataaaactta
agacaatttaaaacttataaaatgcctttatgtaaaactctgagtatatg
tgtaaaaatctgcaaaggttttgtgttataaataagaaaataatttaaat
ggatttaatactactgatttgtggatcaggcggggacaaattatcagcag
aacttatttttagttttatattcagctatattttctatctttgataatta
tagaaaatattactttatactcagtaaaaattgactcaaataacgtcata
tgtatactttttattttattttgaggcagagtctctggcagccaatgcta
gtgtagcttgtggagataaggatgaccttgaactactagttctcctgtct
ccacttcccaaatgcttggtttaatgatatgcaccatcataaccagctat
tagcaataatctttaagaaaacattgtatgggggttagagagactgatct
ccagaggtcctgagttcatttccagcaacatatggtggttcaaatcactg
taatgggatctgatgcctccttctaagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_36600587_36601448
seq2: B6Ng01-018J14.b_273_1123

seq1  TCAAATCAATCATCCATCATGATCAAGTAGGCTTCATCCCAGGGATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAATCATCCATCATGATCAAGTAGGCTTCATCCCAGGGATGCAG  50

seq1  GGATGGTTTAATATATGGAAATCCATCAATGTAATCCACTATATAAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTTAATATATGGAAATCCATCAATGTAATCCACTATATAAGCAA  100

seq1  ACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCTGAGAAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCTGAGAAAGTAT  150

seq1  TTCACAAAATCCAACACCCATCCATGATAAAAGTCTTGGAAAGATCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAATCCAACACCCATCCATGATAAAAGTCTTGGAAAGATCAGGA  200

seq1  AATCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGT  250

seq1  AGCCAACATCAAACTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACATCAAACTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAAT  300

seq1  CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTACTCAATATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTACTCAATATAGTA  350

seq1  CTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGGTTACGGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGGTTACGGGGAT  400

seq1  ACAAATTGGAAAGGAAGAAGTCAAAATACCACTA-TTTGCAGATGAAGTG  449
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAATTGGAAAGGAAGAAGTCAAAATACCACTATTTTGCAGATGAAGTG  450

seq1  ATAGTTTATATAAGTGATCCTAAAAGTTCCACCAGAGAACTCCTTAAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTATATAAGTGATCCTAAAAGTTCCACCAGAGAACTCCTTAAACA  500

seq1  GCAAGCGGTCTTAGCCACTGAAGCATACTGTAGCAGCTCGCCTTGGTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCGGTCTTAGCCACTGAAGCATACTGTAGCAGCTCGCCTTGGTTAT  550

seq1  CTCAGGATCAGTGGTATTCACTGGGCAAGGATTATATGTTTCCCTTCTGA  599
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCA-GATCAGTGGTATTCACTGGGCAAGGATTATATGTTTCCCTTCTGA  599

seq1  GTTATATGCTAAGGTCTAAAAAACAAATTCCTTATTTTATGGACCTTCAC  649
      | |||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  G-TATATGCTAA-GTCTAAAAAACAAATTTCTTATTTTATGGACCTTCAC  647

seq1  ATCAGAGTCACTTAGAAAAAAAAAGTCTGAGAATAGGTGTGCTTAGACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTCACTTAGAAAAAAAAAGTCTGAGAATAGGTGTGCTTAGACAC  697

seq1  TTGAAGAAGTC-TAGAAGGAGTGTTTGGGCATTGGGAATATAATTAT-GG  747
      ||||||||||| ||||||||||||||||||||| || || | ||||| ||
seq2  TTGAAGAAGTCTTAGAAGGAGTGTTTGGGCATTTGGGATTTTATTATGGG  747

seq1  ATGAGAAATGAGACTGATAGTCCTCTAGACTCAGAAAGAAAAAATCTCAG  797
      ||||| |||||||||| ||||| ||||||||||||   | ||||||||||
seq2  ATGAG-AATGAGACTGTTAGTCTTCTAGACTCAGA---AGAAAATCTCAG  793

seq1  CCAAGCTGTCTTAAAGAAGAAAGCTAAGAACATGCAGGTGTC-TGAGATC  846
      |  ||||||||||||||   ||||| |||||||||| ||||| |||||| 
seq2  C--AGCTGTCTTAAAGA--GAAGCT-AGAACATGCA-GTGTCTTGAGAT-  836

seq1  TGGTGGTGCTCATGAA  862
      | |||| ||||||| |
seq2  TTGTGG-GCTCATGGA  851

seq1: chr10_36766180_36767255
seq2: B6Ng01-018J14.g_68_1147 (reverse)

seq1  ACAC-TAGAAGAGAGCATCAGATCCCATTACAGTGATTTTGAGCCACCAT  49
      |||| ||||||   |||||||||||||||||||||| ||||| |||||||
seq2  ACACTTAGAAGGAGGCATCAGATCCCATTACAGTGA-TTTGAACCACCAT  49

seq1  ATGGTTGCTGGAAATTGAACTCAGGACCTCTGGAAGATCAGTCTCTCTAA  99
      || ||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  AT-GTTGCTGGAAA-TGAACTCAGGACCTCTGG-AGATCAGTCTCTCTAA  96

seq1  CCCCCATACAATGTTTTCTTAAAGATTATTGCT-ATAGCTGGTTATGATG  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCCCATACAATGTTTTCTTAAAGATTATTGCTAATAGCTGGTTATGATG  146

seq1  GTGCATATCATTAATCCAAGCATTTGGGAAGTGGAGACAGGAGAACTAGT  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGCATATCATTAAACCAAGCATTTGGGAAGTGGAGACAGGAGAACTAGT  196

seq1  AGTTCAAGGTCATCCTTATCTCCACAAGCTACACTAGCATTGGCTGCCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGTCATCCTTATCTCCACAAGCTACACTAGCATTGGCTGCCAG  246

seq1  AGACTCTGCCTC-AAATAAAAT-AAAAGTATACATATGACGTTATTTGAG  296
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  AGACTCTGCCTCAAAATAAAATAAAAAGTATACATATGACGTTATTTGAG  296

seq1  TCAATTTTTACTGAGTATAAAGTAATATTTTCTATAATTATC-AAGATAG  345
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAATTTTTACTGAGTATAAAGTAATATTTTCTATAATTATCAAAGATAG  346

seq1  AAAATATAGCTGAATAT-AAACTAAAAATAAGTTCTGCTGATAATTTGTC  394
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAATATAGCTGAATATAAAACTAAAAATAAGTTCTGCTGATAATTTGTC  396

seq1  CCCGCCTGATCCAC-AATCAGTAGTATTAAATCCATTTAAATTATTTTCT  443
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCGCCTGATCCACAAATCAGTAGTATTAAATCCATTTAAATTATTTTCT  446

seq1  TATTTATAACAC-AAACCTTTGCAGATTTTTACACATATACTCAGAGTTT  492
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATTTATAACACAAAACCTTTGCAGATTTTTACACATATACTCAGAGTTT  496

seq1  TACATAAAGGCATTTTATAAGTTTTAAATTGTCTTAAGTTTTATAATATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAGGCATTTTATAAGTTTTAAATTGTCTTAAGTTTTATAATATT  546

seq1  TTTTCCCAAGATAATGTTAGTACTCATAAAGTCTTGGGTAAATAAATTTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAAGATAATGTTAGTACTCATAAAGTCTTGGGTAAATAAATTTA  596

seq1  AATTAGTAGATTAGATCTACACTCTAATTCTAATTTTTTCATGATTTTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTAGATTAGATCTACACTCTAATTCTAATTTTTTCATGATTTTTT  646

seq1  ATATTAAAAAAAGTTTGAAACCATATTTTTACCTAAAATGAAGACAGTAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAAAAGTTTGAAACCATATTTTTACCTAAAATGAAGACAGTAA  696

seq1  TACATGTGGAAACTATTATTTTACTCCAGCTCCTCATGACAGCCTCATAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGGAAACTATTATTTTACTCCAGCTCCTCATGACAGCCTCATAC  746

seq1  AGATGGCTTTAACAAGCACGAAGAGGGTGATATGTTTGGCCTTGGCGCAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTTTAACAAGCACGAAGAGGGTGATATGTTTGGCCTTGGCGCAA  796

seq1  TGCTCAGCAAGTTAAAACAAGCATGATGCTAAGAGCAGAGCTGAGGCTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCAAGTTAAAACAAGCATGATGCTAAGAGCAGAGCTGAGGCTTC  846

seq1  TGAAGTGGCCTCTGAAGTGCAGGATGCTCTCCTGCCCAGGAATGGAGTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGCCTCTGAAGTGCAGGATGCTCTCCTGCCCAGGAATGGAGTGT  896

seq1  AGATGTGGATGTGGTGCAGAGTCGGCTGAGCAGGCAGGGTACTCTTCTGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGATGTGGTGCAGAGTCGGCTGAGCAGGCAGGGTACTCTTCTGT  946

seq1  AACACTGTGCTCCACAAGACTGAGCCTGAAACAAAAGACGTTCCACATCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTGCTCCACAAGACTGAGCCTGAAACAAAAGACGTTCCACATCA  996

seq1  ATATCCAAAACTTTTATTTTTTCTTTTTTTACTCTTTACAGTTTTCTAAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAAAACTTTTATTTTTTCTTTTTTTACTCTTTACAGTTTTCTAAT  1046

seq1  TTTATCAGGAAACTTTCTGAAGAGCACAGAATTC  1076
      ||||||||||||||||||||||||||||||||||
seq2  TTTATCAGGAAACTTTCTGAAGAGCACAGAATTC  1080