BAC Information

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BAC

Clone NameB6Ng01-018M24
Chromosome10 (Build37)
Map Location 102,376,469 - 102,442,736
singlet/doubletdoublet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413
Downstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018M24.bB6Ng01-018M24.g
ACCDH852104DH852105
length1,0641,079
definitionDH852104|Mus musculus domesticus DNA, BAC clone: B6Ng01-018M24, 5' end.DH852105|Mus musculus domesticus DNA, BAC clone: B6Ng01-018M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,376,469 - 102,377,547)(102,441,649 - 102,442,736)
sequence
gaattcactctgcagtgcctgaagagtcctgaactctgtgttttcctgat
gactggatttgcccttcagtaacatttgctcatcatcaatattctacgaa
atgggggtggtgttccattggcagaaacagattgaaaacttgtgtctccc
actttgtcacatctgcgtgaagctccctacgcgattgtttttactttcta
ttaatcttacagagaaatgttaaaattgaaggactgaccctgtgttcaaa
gttagtgtcagaaacagtgaagtcataggcttctgttttcaataatgcct
cgcaaaacacagagcttcattaatcataaatgactgcagatttcctagat
cctggcgtggccatggggcttgcgcatttttaagggtcttataaatttga
tcagacaacagcctcatgacattgcataaaaatttagctgttatgggaag
atgaaacagccgttgaaagcattaaaatacttaaaaactgaagatagttt
tattgcatttcaataaaatattagtctgattttgactacttttagttttt
atgttccactaacatatcaatcaatcaacagctatttattgagtggcaac
aatgccttcaaccccacttagcactatagggaacacagagacatgagagt
tccattatttaagaggcattatgtgaaacatctgagagcaaggtgcggtc
ctctctactttggaagctgctctctggtttgtaaagacaaagaagatata
atttctgcaagaaaactacatccaagccaggcatgatggccaacgtctaa
aattcctgctcccaggctgctgaactaggaggacagtaagttcggggata
acttgaactaaaaagggagacactacctgaagacagacaagtgccgaaag
agacaaacatacctccacttagcaataggtctgctggagaaggaactgcc
atgtttctgttctacccataacatcaacatggagaatctctgacattacg
gaaaccctcccccaccagcccagtaatacacagtcacacatgcaaattct
acagtgaagagtgg
gaattcccttaattctaattactccagcagagctcatttttcctctattt
tctccagaatttttgtgggacagagagaagaacttgattattgtgtcaag
accatacctttgcctatttcctctgagtgtttcatccgtgccttagatgg
catgcacatatacctgcacaatacttctttgggtatacaaactgatgcaa
ttgttttgtctttcctagtcacatcaattaccccccccccccaaaaaaaa
agtccttatttttccctaaactgactaaaccaatcaacatgtcaaacagg
taagggatgtgatcacataattcttgtgtcttgttttctaaaacaggcag
tgggttccctgacatttgataaatttcaagttacattttctttgaaatct
gctgcttctctttaaggaagatatctgtgaaatctctaggctttcaacct
gctcccccacacgagttggaacttgtcagactttctgtaatgtttctact
acactttgatcataccctcattacttcacgcaatacagtcagatgaatac
acaaatgttttccctgccagattcttcactcttaataaagtaatttctgt
atacctttggtatgttattgagttctttttatttagtatgttttaatgaa
aagagtctgtaaatggtaaaagcttgcatcataattgtaaaaaagatggt
aaattatcactatgcaaaataaaatggtaaattatcactatgcaaaagac
taagaaatggcagcaagatatatgatatctgatttcaaacaaaaacatcc
tttgtgctgttagttctttgattagattatactaaaagttggaaatagat
catctttgcttattcctattcatggctttatagatttgcaggaaagaata
ccaaagattcttaggcttatttatggaaactgtattttttcattgaattt
aagctaatgtatgttgttcaagagccaacgtgctttgagctttacttaga
cttaagctgtgtaactttaatgggtagcatatgttctctggagtcatgta
gatgacttgtacaagttaccttctgaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102376469_102377547
seq2: B6Ng01-018M24.b_47_1110

seq1  GAATTCACTCTGCAGTGCCTGAAGAGTCCTGAACTCTGTGTTTTCCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGCAGTGCCTGAAGAGTCCTGAACTCTGTGTTTTCCTGAT  50

seq1  GACTGGATTTGCCCTTCAGTAACATTTGCTCATCATCAATATTCTACGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATTTGCCCTTCAGTAACATTTGCTCATCATCAATATTCTACGAA  100

seq1  ATGGGGGTGGTGTTCCATTGGCAGAAACAGATTGAAAACTTGTGTCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGTGGTGTTCCATTGGCAGAAACAGATTGAAAACTTGTGTCTCCC  150

seq1  ACTTTGTCACATCTGCGTGAAGCTCCCTACGCGATTGTTTTTACTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCACATCTGCGTGAAGCTCCCTACGCGATTGTTTTTACTTTCTA  200

seq1  TTAATCTTACAGAGAAATGTTAAAATTGAAGGACTGACCCTGTGTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTACAGAGAAATGTTAAAATTGAAGGACTGACCCTGTGTTCAAA  250

seq1  GTTAGTGTCAGAAACAGTGAAGTCATAGGCTTCTGTTTTCAATAATGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGTCAGAAACAGTGAAGTCATAGGCTTCTGTTTTCAATAATGCCT  300

seq1  CGCAAAACACAGAGCTTCATTAATCATAAATGACTGCAGATTTCCTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAACACAGAGCTTCATTAATCATAAATGACTGCAGATTTCCTAGAT  350

seq1  CCTGGCGTGGCCATGGGGCTTGCGCATTTTTAAGGGTCTTATAAATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCGTGGCCATGGGGCTTGCGCATTTTTAAGGGTCTTATAAATTTGA  400

seq1  TCAGACAACAGCCTCATGACATTGCATAAAAATTTAGCTGTTATGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAACAGCCTCATGACATTGCATAAAAATTTAGCTGTTATGGGAAG  450

seq1  ATGAAACAGCCGTTGAAAGCATTAAAATACTTAAAAACTGAAGATAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAGCCGTTGAAAGCATTAAAATACTTAAAAACTGAAGATAGTTT  500

seq1  TATTGCATTTCAATAAAATATTAGTCTGATTTTGACTACTTTTAGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATTTCAATAAAATATTAGTCTGATTTTGACTACTTTTAGTTTTT  550

seq1  ATGTTCCACTAACATATCAATCAATCAACAGCTATTTATTGAGTGGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCACTAACATATCAATCAATCAACAGCTATTTATTGAGTGGCAAC  600

seq1  AATGCCTTCAACCCCACTTAGCACTATAGGGAACACAGAGACATGAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCAACCCCACTTAGCACTATAGGGAACACAGAGACATGAGAGT  650

seq1  TCCATTATTTAAGAGGCATTATGTGAAACATCTGAGAGCAAGGTGCGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATTTAAGAGGCATTATGTGAAACATCTGAGAGCAAGGTGCGGTC  700

seq1  CTCTCTACTTTGGAAGCTGCTCTCTGGTTTGTAAAGACAAAGAAGATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACTTTGGAAGCTGCTCTCTGGTTTGTAAAGACAAAGAAGATATA  750

seq1  ATTTCTGCAAGAAAACTACATCCAAGCCAGGCATGATGGCCAACGTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCAAGAAAACTACATCCAAGCCAGGCATGATGGCCAACGTCTAA  800

seq1  AATTCCTGCTCCCAGGCTGCTGAACTAGGAGGACAGTAAGTTCGGGGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGCTCCCAGGCTGCTGAACTAGGAGGACAGTAAGTTCGGGGATA  850

seq1  ACTTGAACTAAAAAGGGAGACACTACCTGAAGACAGACAAGTGCCGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACTAAAAAGGGAGACACTACCTGAAGACAGACAAGTGCCGAAAG  900

seq1  AGACAAACATACCTCCACTTAGGCAAATAGGTCTGCTGGAAGAAGGAACT  950
      ||||||||||||||||||||||   |||||||||||||| ||||||||||
seq2  AGACAAACATACCTCCACTTAG--CAATAGGTCTGCTGG-AGAAGGAACT  947

seq1  GCCCATGTTTCCTGTTCCTACCCCATAACAATCAACAATGGAGAATTCTC  1000
      | |||||||| ||||| ||| |||||||| |||||| |||||||| ||||
seq2  G-CCATGTTT-CTGTT-CTA-CCCATAAC-ATCAAC-ATGGAGAA-TCTC  990

seq1  TGACATTACGGAAACCCTCCCCCACCCAGCCCCAGTAATACACAGTCACA  1050
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  TGACATTACGGAAACCCTCCCCCA-CCAG-CCCAGTAATACACAGTCACA  1038

seq1  CATGGCAAATTCTACAGTGGAAAGAGTGG  1079
      ||| |||||||||||||||  ||||||||
seq2  CAT-GCAAATTCTACAGTG--AAGAGTGG  1064

seq1: chr10_102441649_102442736
seq2: B6Ng01-018M24.g_66_1144 (reverse)

seq1  TATTCAGAAGTAAACTTTGTACAAGTCATCTACATGGACATCCAGAGAAC  50
      ||||||||||  ||| ||||||||||||||||||| ||| ||||||||||
seq2  TATTCAGAAGGTAAC-TTGTACAAGTCATCTACAT-GAC-TCCAGAGAAC  47

seq1  ATATGCTACCAATTAAAAGTTACACAAGCTTAAGTCTAAGTAAAAGCTTC  100
      |||||||||| ||| |||||||||| ||||||||||||||| ||||| ||
seq2  ATATGCTACCCATT-AAAGTTACAC-AGCTTAAGTCTAAGT-AAAGC-TC  93

seq1  AAAGCACGTTGGCTTCTGAACAACATACATTAGCTTAAATTCAATGAAAA  150
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  AAAGCACGTTGGCTCTTGAACAACATACATTAGCTTAAATTCAATGAAAA  143

seq1  AATACAGTTTCCATAAATAAGCCTAAGAATTCTTTGGTATTCTTTCCTGC  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATACAGTTTCCATAAATAAGCCTAAGAA-TCTTTGGTATTCTTTCCTGC  192

seq1  AAATCTATAAAGCCATGAATAGGAATAAGCAAAGATGATCTATTTCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATAAAGCCATGAATAGGAATAAGCAAAGATGATCTATTTCCAAC  242

seq1  TTTTAGTATAATCTAATCAAAGAACTAACAGCACAAAGGATGTTTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTATAATCTAATCAAAGAACTAACAGCACAAAGGATGTTTTTGTT  292

seq1  TGAAATCAGATATCATATATCTTGCTGCCATTTCTTAGTCTTTTGCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAGATATCATATATCTTGCTGCCATTTCTTAGTCTTTTGCATAG  342

seq1  TGATAATTTACCATTTTATTTTGCATAGTGATAATTTACCATCTTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTACCATTTTATTTTGCATAGTGATAATTTACCATCTTTTTTA  392

seq1  CAATTATGATGCAAGCTTTTACCATTTACAGACTCTTTTCATTAAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGATGCAAGCTTTTACCATTTACAGACTCTTTTCATTAAAACAT  442

seq1  ACTAAATAAAAAGAACTCAATAACATACCAAAGGTATACAGAAATTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATAAAAAGAACTCAATAACATACCAAAGGTATACAGAAATTACTT  492

seq1  TATTAAGAGTGAAGAATCTGGCAGGGAAAACATTTGTGTATTCATCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAGTGAAGAATCTGGCAGGGAAAACATTTGTGTATTCATCTGAC  542

seq1  TGTATTGCGTGAAGTAATGAGGGTATGATCAAAGTGTAGTAGAAACATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGCGTGAAGTAATGAGGGTATGATCAAAGTGTAGTAGAAACATTA  592

seq1  CAGAAAGTCTGACAAGTTCCAACTCGTGTGGGGGAGCAGGTTGAAAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTCTGACAAGTTCCAACTCGTGTGGGGGAGCAGGTTGAAAGCCT  642

seq1  AGAGATTTCACAGATATCTTCCTTAAAGAGAAGCAGCAGATTTCAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTCACAGATATCTTCCTTAAAGAGAAGCAGCAGATTTCAAAGAA  692

seq1  AATGTAACTTGAAATTTATCAAATGTCAGGGAACCCACTGCCTGTTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACTTGAAATTTATCAAATGTCAGGGAACCCACTGCCTGTTTTAG  742

seq1  AAAACAAGACACAAGAATTATGTGATCACATCCCTTACCTGTTTGACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGACACAAGAATTATGTGATCACATCCCTTACCTGTTTGACATG  792

seq1  TTGATTGGTTTAGTCAGTTTAGGGAAAAATAAGGACTTTTTTTTTGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGATTGGTTTAGTCAGTTTAGGGAAAAATAAGGACTTTTTTTTT-GGGG  841

seq1  GGGGGGGGTAATTGATGTGACTAGGAAAGACAAAACAATTGCATCAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGTAATTGATGTGACTAGGAAAGACAAAACAATTGCATCAGTTT  891

seq1  GTATACCCAAAGAAGTATTGTGCAGGTATATGTGCATGCCATCTAAGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCCAAAGAAGTATTGTGCAGGTATATGTGCATGCCATCTAAGGCA  941

seq1  CGGATGAAACACTCAGAGGAAATAGGCAAAGGTATGGTCTTGACACAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGAAACACTCAGAGGAAATAGGCAAAGGTATGGTCTTGACACAATA  991

seq1  ATCAAGTTCTTCTCTCTGTCCCACAAAAATTCTGGAGAAAATAGAGGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTTCTTCTCTCTGTCCCACAAAAATTCTGGAGAAAATAGAGGAAA  1041

seq1  AATGAGCTCTGCTGGAGTAATTAGAATTAAGGGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTCTGCTGGAGTAATTAGAATTAAGGGAATTC  1079