BAC Information

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BAC

Clone NameB6Ng01-018N01
Chromosome10 (Build37)
Map Location 126,194,448 - 126,361,606
singlet/doubletdoublet
Overlap geneLOC668336, Xrcc6bp1, LOC622567
Upstream geneLrig3, LOC100043547
Downstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018N01.bB6Ng01-018N01.g
ACCDH852106DH852107
length613818
definitionDH852106|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N01, 5' end.DH852107|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,194,448 - 126,195,060)(126,360,794 - 126,361,606)
sequence
gaattcaaagccagcctggtctacatagtgagttccatgacagatactac
tgtatagaaatatctggtttcaagagggggagtacccaaggttatatgaa
cacgagatctagagctgatccatatttgtatgaagctcgatccctctgca
gttgtgatcctggacaaatcgtggaaatgtgcctcagctttgtcatccat
aaaagtgggaagagacaaacagacgatgtcttagatactttccagttgcc
gtgagaagacacggtgaccaaggcagcttataggaaaagaagtgtttatt
tggggcaaatagttctccggaaggttagagcccatgaccaccatggcaga
gaacatggtgggagcatggtgggaacatgatggcaggctagtgtgacact
agagcaggaactgagagctcatatcttgagacaaccaccatgaggcagag
tgagaattagatgtgaatagtgtgggctttggaaaccttgaagactacca
ctcccagtgacacgcctcctccaacaaggccacacctcccaatctttccc
aaacagttttaccaattgtgaaccaagtattcaaacagatgggcctatgg
gggtggggggagc
gaattctcagagatccccctgcctgtgcctctgaagtgctaggattagag
gcatgcaccactcctgccctgctgcccctggttcatctctttatgaagtg
ggagcacactgcactgctggccagactggctctgaacccccacatccaag
gccatgacccacctgactcagcctaccagatggctgagactcgtcacaca
gcatggtgtctggcttagatagacattgcatttacaggatgttgttctat
gttggtaagacacataaaagactaaagaaagaaaacacgaggctggagag
atggctcagcagtaaagaatgcttgctgttcttccaggggctcagaagcc
agggaggttggcttacagccacctggactccagctctaggagatctgatt
ctaccttctggcttatgtgtgaagctacccacgcatgtgcacaaacatac
atgcatacacataaatgaaaaataaatcttaaaaaggaaagaacaccttg
aaaagctacattgtcactaacatctgcctgatatgcctggtccctgaatc
tggtgtttatctctctgacgaagcgatttggatatctttactgtatgagt
ttttcttaaacgtgcatcttttccccatatatttttgtttctcagagtct
tcatgttgatagctttttcagggccagttgactcagagtgcagtaaactg
aattatttgaatagaccacaactaaagttttccatttctggttagtgcac
atcaaattgggttccgtttcccccctgttgcaaagactgggaacattcct
caaacagctctttatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126194448_126195060
seq2: B6Ng01-018N01.b_44_656

seq1  GAATTCAAAGCCAGCCTGGTCTACATAGTGAGTTCCATGACAGATACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCAGCCTGGTCTACATAGTGAGTTCCATGACAGATACTAC  50

seq1  TGTATAGAAATATCTGGTTTCAAGAGGGGGAGTACCCAAGGTTATATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGAAATATCTGGTTTCAAGAGGGGGAGTACCCAAGGTTATATGAA  100

seq1  CACGAGATCTAGAGCTGATCCATATTTGTATGAAGCTCGATCCCTCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGATCTAGAGCTGATCCATATTTGTATGAAGCTCGATCCCTCTGCA  150

seq1  GTTGTGATCCTGGACAAATCGTGGAAATGTGCCTCAGCTTTGTCATCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGATCCTGGACAAATCGTGGAAATGTGCCTCAGCTTTGTCATCCAT  200

seq1  AAAAGTGGGAAGAGACAAACAGACGATGTCTTAGATACTTTCCAGTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGGAAGAGACAAACAGACGATGTCTTAGATACTTTCCAGTTGCC  250

seq1  GTGAGAAGACACGGTGACCAAGGCAGCTTATAGGAAAAGAAGTGTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGACACGGTGACCAAGGCAGCTTATAGGAAAAGAAGTGTTTATT  300

seq1  TGGGGCAAATAGTTCTCCGGAAGGTTAGAGCCCATGACCACCATGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAATAGTTCTCCGGAAGGTTAGAGCCCATGACCACCATGGCAGA  350

seq1  GAACATGGTGGGAGCATGGTGGGAACATGATGGCAGGCTAGTGTGACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGTGGGAGCATGGTGGGAACATGATGGCAGGCTAGTGTGACACT  400

seq1  AGAGCAGGAACTGAGAGCTCATATCTTGAGACAACCACCATGAGGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGAACTGAGAGCTCATATCTTGAGACAACCACCATGAGGCAGAG  450

seq1  TGAGAATTAGATGTGAATAGTGTGGGCTTTGGAAACCTTGAAGACTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTAGATGTGAATAGTGTGGGCTTTGGAAACCTTGAAGACTACCA  500

seq1  CTCCCAGTGACACGCCTCCTCCAACAAGGCCACACCTCCCAATCTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTGACACGCCTCCTCCAACAAGGCCACACCTCCCAATCTTTCCC  550

seq1  AAACAGTTTTACCAATTGTGAACCAAGTATTCAAACAGATGGGCCTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTTACCAATTGTGAACCAAGTATTCAAACAGATGGGCCTATGG  600

seq1  GGGTGGGGGGAGC  613
      |||||||||||||
seq2  GGGTGGGGGGAGC  613

seq1: chr10_126360794_126361606
seq2: B6Ng01-018N01.g_69_886 (reverse)

seq1  TACATAAAGAGCTGTTTGAGGAATGTTCCCAGTCTTTGCAACA-GGGGGA  49
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACATAAAGAGCTGTTTGAGGAATGTTCCCAGTCTTTGCAACAGGGGGGA  50

seq1  AACGGACCCAACTTTGATGTGCACTAACCAGAAATGG-AAACTTTAGTTG  98
      |||||| || | ||||||||||||||||||||||||| ||||||||||||
seq2  AACGGAACCCAATTTGATGTGCACTAACCAGAAATGGAAAACTTTAGTTG  100

seq1  TGGTCTATTCAAATAATTCAGTTTACTGCACTCTGAGTCAACTGGCCCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTATTCAAATAATTCAGTTTACTGCACTCTGAGTCAACTGGCCCTG  150

seq1  -AAAAGCTATCAACATGAAGACTCTGAGAAAC-AAAATATATGGGG-AAA  195
       ||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  AAAAAGCTATCAACATGAAGACTCTGAGAAACAAAAATATATGGGGAAAA  200

seq1  GATGCACGTTTAAGAAAAACTCATACAGTAAAGATATCCAAATCGCTTCG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACGTTTAAGAAAAACTCATACAGTAAAGATATCCAAATCGCTTCG  250

seq1  TCAGAGAGATAAACACCAGATTCAGGGACCAGGCATATCAGGCAGATGTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGATAAACACCAGATTCAGGGACCAGGCATATCAGGCAGATGTT  300

seq1  AGTGACAATGTAGCTTTTCAAGGTGTTCTTTCCTTTTTAAGATTTATTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAATGTAGCTTTTCAAGGTGTTCTTTCCTTTTTAAGATTTATTTT  350

seq1  TCATTTATGTGTATGCATGTATGTTTGTGCACATGCGTGGGTAGCTTCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATGTGTATGCATGTATGTTTGTGCACATGCGTGGGTAGCTTCAC  400

seq1  ACATAAGCCAGAAGGTAGAATCAGATCTCCTAGAGCTGGAGTCCAGGTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGCCAGAAGGTAGAATCAGATCTCCTAGAGCTGGAGTCCAGGTGG  450

seq1  CTGTAAGCCAACCTCCCTGGCTTCTGAGCCCCTGGAAGAACAGCAAGCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGCCAACCTCCCTGGCTTCTGAGCCCCTGGAAGAACAGCAAGCAT  500

seq1  TCTTTACTGCTGAGCCATCTCTCCAGCCTCGTGTTTTCTTTCTTTAGTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTGCTGAGCCATCTCTCCAGCCTCGTGTTTTCTTTCTTTAGTCT  550

seq1  TTTATGTGTCTTACCAACATAGAACAACATCCTGTAAATGCAATGTCTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTCTTACCAACATAGAACAACATCCTGTAAATGCAATGTCTAT  600

seq1  CTAAGCCAGACACCATGCTGTGTGACGAGTCTCAGCCATCTGGTAGGCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCAGACACCATGCTGTGTGACGAGTCTCAGCCATCTGGTAGGCTG  650

seq1  AGTCAGGTGGGTCATGGCCTTGGATGTGGGGGTTCAGAGCCAGTCTGGCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTGGGTCATGGCCTTGGATGTGGGGGTTCAGAGCCAGTCTGGCC  700

seq1  AGCAGTGCAGTGTGCTCCCACTTCATAAAGAGATGAACCAGGGGCAGCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCAGTGTGCTCCCACTTCATAAAGAGATGAACCAGGGGCAGCAG  750

seq1  GGCAGGAGTGGTGCATGCCTCTAATCCTAGCACTTCAGAGGCACAGGCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGTGGTGCATGCCTCTAATCCTAGCACTTCAGAGGCACAGGCAG  800

seq1  GGGGATCTCTGAGAATTC  813
      ||||||||||||||||||
seq2  GGGGATCTCTGAGAATTC  818