BAC Information

Click to search

BAC

Clone NameB6Ng01-019H02
Chromosome10 (Build37)
Map Location 49,709,216 - 49,710,097
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik2
Downstream geneLOC629652, Ascc3, Sim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019H02.bB6Ng01-019H02.g
ACCDH852526DH852527
length888530
definitionDH852526|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H02, 5' end.DH852527|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgtacttgatcaacacttctaaataactgttttttgtcttatg
tgctattccttttcccctactaaaaaagcaatgattctccatcctctttg
aaccattgtaatctgatttgaccatggaatgtttgtcaccatgaggaaag
ctctccttttcagacctgaagctgacttaaatctcacccacaaagagaca
gtgaacctgaggatgacagaatcctaaaccaagtttagcaatccctaacc
aaactcgggtgcctgggttgttttgtatgatgatgcaaagctttcaaatt
aattctgtgggactttcacactgtgtattatgatgattttcatttcctct
ccctagattccttacagatgtatttcctttccctaactgtccaattattt
ttatttgtagctatactttcttactatgtgtcatagcaattcaaaagtta
tgatcaaacttgctttacttccagagataataacttctccagtaaccact
ttgattctgctattaaacttagcctgcctaacaagaggactgaataaaaa
ctttagccatgaactcagttctgttcacccgtgtttgttggacattggga
tatacacagacagtctggtctccagttgagctgaggactgaaccctggaa
tgctgataattcacctacatggcacagtaggcattccctcatgctcctgg
aactctggctcctgtctaagttaccaacccccccccccagcccccacagg
gaaaagaatagctaatagtcacataggcaatgtccctagcttctgacctt
caggctaaactcctccctagttccctagcaacagtaaagataacccaaca
ccataaagagtggctgcttggcccacaccttcactccc

tctgtttagctctgtaccccattttttaacttggttatttacttgttggt
gtcaaatttcttgagttctatatattttagatattagtcctctgttggat
atagggttagtgaagattcatttccaattaggaggctgacattttgtcct
atgttctttgcattacagaagcttttaagtttcacaaggacccatttgtc
aattgttggacttagagccttagtcattgatgttctgttcaggaaactgt
ctcctattctgatgtggttaaggctatttcccactttcttttctattaga
attaactatgtccagttttgtgttagagtctttgatccacttggaattga
gatgtgtagggtgataaatatggttctacttgtattcttctacacagagg
catccagttagactaggaccttttgttaaagatgctttttttcttctatt
gtgtggttttgagttttttttttttttttttttgtaaaaaattaaagtgt
ccatagttctgctggtttatttctgtggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49709216_49710097
seq2: B6Ng01-019H02.b_38_925 (reverse)

seq1  GAGAGTG-AGGTGT-GGCCAAGCAGCCACTC-TTATGGTG-TGGGTTATC  46
      | ||||| |||||| |||||||||||||||| |||||||| |||||||||
seq2  GGGAGTGAAGGTGTGGGCCAAGCAGCCACTCTTTATGGTGTTGGGTTATC  50

seq1  TTTACTGTTGCTAGGGAACTAGGGAGGAGTTTAGCCTGAAGGTCAGAAGC  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTTGCTAGGGAACTAGGGAGGAGTTTAGCCTGAAGGTCAGAAGC  100

seq1  TAGGGACATTGCCTATGTGACTATTAGCTATTCTTTT-CCTGTGGGGGCT  145
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGGGACATTGCCTATGTGACTATTAGCTATTCTTTTCCCTGTGGGGGCT  150

seq1  -GGGGGGGGGGTTGGTAACTTAGACAGGAGCCAGAGTTCCAGGAGCATGA  194
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGTTGGTAACTTAGACAGGAGCCAGAGTTCCAGGAGCATGA  200

seq1  GGGAATGCCTACTGTGCCATGTAGGTGAATTATCAGCATTCCAGGGTTCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGCCTACTGTGCCATGTAGGTGAATTATCAGCATTCCAGGGTTCA  250

seq1  GTCCTCAGCTCAACTGGAGACCAGACTGTCTGTGTATATCCCAATGTCCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGCTCAACTGGAGACCAGACTGTCTGTGTATATCCCAATGTCCA  300

seq1  ACAAACACGGGTGAACAGAACTGAGTTCATGGCTAAAGTTTTTATTCAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACGGGTGAACAGAACTGAGTTCATGGCTAAAGTTTTTATTCAGT  350

seq1  CCTCTTGTTAGGCAGGCTAAGTTTAATAGCAGAATCAAAGTGGTTACTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTTAGGCAGGCTAAGTTTAATAGCAGAATCAAAGTGGTTACTGG  400

seq1  AGAAGTTATTATCTCTGGAAGTAAAGCAAGTTTGATCATAACTTTTGAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTATTATCTCTGGAAGTAAAGCAAGTTTGATCATAACTTTTGAAT  450

seq1  TGCTATGACACATAGTAAGAAAGTATAGCTACAAATAAAAATAATTGGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGACACATAGTAAGAAAGTATAGCTACAAATAAAAATAATTGGAC  500

seq1  AGTTAGGGAAAGGAAATACATCTGTAAGGAATCTAGGGAGAGGAAATGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGAAAGGAAATACATCTGTAAGGAATCTAGGGAGAGGAAATGAA  550

seq1  AATCATCATAATACACAGTGTGAAAGTCCCACAGAATTAATTTGAAAGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCATAATACACAGTGTGAAAGTCCCACAGAATTAATTTGAAAGCT  600

seq1  TTGCATCATCATACAAAACAACCCAGGCACCCGAGTTTGGTTAGGGATTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCATCATACAAAACAACCCAGGCACCCGAGTTTGGTTAGGGATTG  650

seq1  CTAAACTTGGTTTAGGATTCTGTCATCCTCAGGTTCACTGTCTCTTTGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTGGTTTAGGATTCTGTCATCCTCAGGTTCACTGTCTCTTTGTG  700

seq1  GGTGAGATTTAAGTCAGCTTCAGGTCTGAAAAGGAGAGCTTTCCTCATGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATTTAAGTCAGCTTCAGGTCTGAAAAGGAGAGCTTTCCTCATGG  750

seq1  TGACAAACATTCCATGGTCAAATCAGATTACAATGGTTCAAAGAGGATGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACATTCCATGGTCAAATCAGATTACAATGGTTCAAAGAGGATGG  800

seq1  AGAATCATTGCTTTTTTAGTAGGGGAAAAGGAATAGCACATAAGACAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATTGCTTTTTTAGTAGGGGAAAAGGAATAGCACATAAGACAAAA  850

seq1  AACAGTTATTTAGAAGTGTTGATCAAGTACAGGAATTC  882
      ||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTATTTAGAAGTGTTGATCAAGTACAGGAATTC  888


| Home | SequenceCutter | Blast | Download |