BAC Information

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BAC

Clone NameB6Ng01-019H11
Chromosome10 (Build37)16 (Build37)
Map Location 104,054,816 - 104,055,39768,427,803 - 68,428,618
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019H11.bB6Ng01-019H11.g
ACCDH852542DH852543
length998816
definitionDH852542|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H11, 5' end.DH852543|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,054,816 - 104,055,397)(68,427,803 - 68,428,618)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttcatt
ttctggtttccatcttcttgagctcaaacaagtcaatggcctttctctac
acaaagaataaacaggctgagaaagaaattagggaaaaaacacccttctc
aatagtcacaaataatataaaatatcttggtgtgactctaactaaggaag
tgaaagatctgtatgataaaaacttcaagtctgtgaaaaaagaaattaaa
gaagatctcagaagatggaaagatctcctatgctcatggattggcaggat
caacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatg
caatccccatcaaaattccaactcaattcttcaacgatttagaaggagca
atctgcaaattcatctggaataacagtaaacctaggatagcaaacactct
tctcaaggatcaaagaacctctggtggaatcaccatgcctgacctaaagc
tttactacagagcaattgtgataaaagctgcatggtactggtacagtcac
agacaagtagaccaatggaatagaattgaagacccagaaatgaacccaca
cacctatggtcacttgatcttcgacaagggtgctaaaaccatccagtgga
aaaaagacagcattttcaacgaatggtgctggcacaactggttgttatca
tgtagaagaatgtgaattgatccattcctatttccttgtactaaggtcaa
atctaagtggatcaaggaacttcacataaaaccagagacactgaaactta
tagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaat
tcctgaatagaacagcaatggcttgcactgtaagatcgagaattgacaaa
tgggatctcatgaaactgcaaagcttctgcaagcaaaagatactgtcaat
agacaaagaccaccaacagattgggaaaggatctttacctatcctaat
gaattctgaaccacaaaccaaagggtgagcatggcctagactaaggctac
ctgctcatatatagcagatatgcagcttggttgggatgttaggatgtagc
tcccccgaaagctggagcagggactggcttggaatctgtaatctgcctgt
ggataccattcccatagctgtgctaccttgtttcatttcattagaagaga
atgaacctagttctgtatatcattaatgtgccggagtggggtaattcaca
gggtggcctccctttctcagaaggaaaagaggggatgggaaagaagatga
aggagggaggacttggaggagaggaggcaaatattgggatgtaaaatgaa
taaattgaataaataattaatgaaaataaagaactgataaggctaattat
tattcttttacaacaacacaattggcacccgatgtgggactcttagaatc
taagcttagttgaaaaagaatctcagataaaagacacactgtcttcttag
taaaactgctgaaaacacagccagctgcttgaggaaccatggagacattc
cacttcactatatgacagcagcgggactaaccagtgtctccctggattcc
ttgcctgtgagctgtgtggtaaatgaacacatgcttttcaggaagagcct
acagccctgtatgggccctgaatgcagaaatccttgatgtgggctggcaa
gcagtggtccagccccagatagaaagaggggacttagactggtgcttgtt
cctgcagtcctctgggccaatgatttaggataagttgtttatttgctctg
tttcattctttgtcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104054816_104055397
seq2: B6Ng01-019H11.b_114_695 (reverse)

seq1  TTTTTCCACTGGATAGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATA  50
      |||||||||||||| |||||||| |||||||| |||||||||||||||||
seq2  TTTTTCCACTGGATGGTTTTAGCACCCTTGTCGAAGATCAAGTGACCATA  50

seq1  GGTGTGTGGGTTCATCTCTGGATCTTCAATTCTGTTCCATTGGTCTACTT  100
      ||||||||||||||| ||||| ||||||||||| ||||||||||||||||
seq2  GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT  100

seq1  GTCTGTCGCTATACAAGTACCATGCAGTTTTTATCACAATTGCTCTGTAG  150
      ||||||  || ||| |||||||||||| ||||||||||||||||||||||
seq2  GTCTGTGACTGTACCAGTACCATGCAGCTTTTATCACAATTGCTCTGTAG  150

seq1  TACAGTTTTAGGTCCGGGATGGTGATTCCACCAGAGGTTCTTTTATCCTT  200
      || || |||||||| || ||||||||||||||||||||||||| ||||||
seq2  TAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTGATCCTT  200

seq1  GAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATCTGC  250
      ||||||||| |||||||||||||||||  ||||||||||||||||| |||
seq2  GAGAAGAGTGTTTGCTATCCTAGGTTTACTGTTATTCCAGATGAATTTGC  250

seq1  CGATTGCCCTTTATAATTCTTTGAAGAATTGAGTTGGAATTTTGATGGGG  300
       |||||| | || ||| || ||||||||||||||||||||||||||||||
seq2  AGATTGCTCCTTCTAAATCGTTGAAGAATTGAGTTGGAATTTTGATGGGG  300

seq1  ATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATAGCCATTTTTACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATAGCCATTTTTACAAT  350

seq1  ATTGATCCTGCCGATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGAT  400
       ||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GTTGATCCTGCCAATCCATGAGCATAGGAGATCTTTCCATCTTCTGAGAT  400

seq1  CTTCTTTAATTTCTTTCTTCAGAGACATGAAGTTCTTGTCATACAGATCT  450
      |||||||||||||||| |||| |||| ||||||| || ||||||||||||
seq2  CTTCTTTAATTTCTTTTTTCACAGACTTGAAGTTTTTATCATACAGATCT  450

seq1  TTCACTTCCTTAGTTAGAGTCACGCCAAGGAATTTTATATTATTTGTGGC  500
      ||||||||||||||||||||||| |||||  ||||||||||||||||| |
seq2  TTCACTTCCTTAGTTAGAGTCACACCAAGATATTTTATATTATTTGTGAC  500

seq1  TATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTGTCCT  550
      |||||||||||||||| |||||||||||||||||||||||||||| | ||
seq2  TATTGAGAAGGGTGTTTTTTCCCTAATTTCTTTCTCAGCCTGTTTATTCT  550

seq1  TTGTGTAGAGAAAGCCCATTGACTTGTTTGAG  582
      |||||||||||||| |||||||||||||||||
seq2  TTGTGTAGAGAAAGGCCATTGACTTGTTTGAG  582

seq1: chr16_68427803_68428618
seq2: B6Ng01-019H11.g_67_882 (reverse)

seq1  GCGACAAAGAATGAAAACAGAGCAAATACAACAACTTATCCT-AATCATT  49
      ||||||||||||| |||||||||||||| ||||||||||||| |||||||
seq2  GCGACAAAGAATG-AAACAGAGCAAATA-AACAACTTATCCTAAATCATT  48

seq1  GGCCCTAGAGGACTGCAGGAACAAGCACCAGTCTAAGTCCCCTC-TTCTA  98
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCCC-AGAGGACTGCAGGAACAAGCACCAGTCTAAGTCCCCTCTTTCTA  97

seq1  TCTGGGGCTGGACCACTGCTTGCCAGCCCACATCAAGGATTTCTGCATTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCTGGACCACTGCTTGCCAGCCCACATCAAGGATTTCTGCATTC  147

seq1  AGGGCCCATACAGGGCTGTAGGCTCTTCCTG-AAAGCATGTGTTCATTTA  197
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGGCCCATACAGGGCTGTAGGCTCTTCCTGAAAAGCATGTGTTCATTTA  197

seq1  CCACACAGCTCACAGGCAAGGAATCCAGGGAGACACTGGTTAGTCCCGCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGCTCACAGGCAAGGAATCCAGGGAGACACTGGTTAGTCCCGCT  247

seq1  GCTGTCATATAGTGAAGTGGAATGTCTCCATGGTTCCTCAAGCAGCTGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATATAGTGAAGTGGAATGTCTCCATGGTTCCTCAAGCAGCTGGC  297

seq1  TGTGTTTTCAGCAGTTTTACTAAGAAGACAGTGTGTCTTTTATCTGAGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCAGCAGTTTTACTAAGAAGACAGTGTGTCTTTTATCTGAGAT  347

seq1  TCTTTTTCAACTAAGCTTAGATTCTAAGAGTCCCACATCGGGTGCCAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCAACTAAGCTTAGATTCTAAGAGTCCCACATCGGGTGCCAATT  397

seq1  GTGTTGTTGTAAAAGAATAATAATTAGCCTTATCAGTTCTTTATTTTCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTTGTAAAAGAATAATAATTAGCCTTATCAGTTCTTTATTTTCAT  447

seq1  TAATTATTTATTCAATTTATTCATTTTACATCCCAATATTTGCCTCCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTATTCAATTTATTCATTTTACATCCCAATATTTGCCTCCTCT  497

seq1  CCTCCAAGTCCTCCCTCCTTCATCTTCTTTCCCATCCCCTCTTTTCCTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGTCCTCCCTCCTTCATCTTCTTTCCCATCCCCTCTTTTCCTTC  547

seq1  TGAGAAAGGGAGGCCACCCTGTGAATTACCCCACTCCGGCACATTAATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGGAGGCCACCCTGTGAATTACCCCACTCCGGCACATTAATGA  597

seq1  TATACAGAACTAGGTTCATTCTCTTCTAATGAAATGAAACAAGGTAGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAACTAGGTTCATTCTCTTCTAATGAAATGAAACAAGGTAGCAC  647

seq1  AGCTATGGGAATGGTATCCACAGGCAGATTACAGATTCCAAGCCAGTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGGAATGGTATCCACAGGCAGATTACAGATTCCAAGCCAGTCCC  697

seq1  TGCTCCAGCTTTCGGGGGAGCTACATCCTAACATCCCAACCAAGCTGCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGCTTTCGGGGGAGCTACATCCTAACATCCCAACCAAGCTGCAT  747

seq1  ATCTGCTATATATGAGCAGGTAGCCTTAGTCTAGGCCATGCTCACCCTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTATATATGAGCAGGTAGCCTTAGTCTAGGCCATGCTCACCCTTT  797

seq1  GGTTTGTGGTTCAGAATTC  816
      |||||||||||||||||||
seq2  GGTTTGTGGTTCAGAATTC  816