BAC Information

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BAC

Clone NameB6Ng01-020A07
Chromosome10 (Build37)
Map Location 111,560,544 - 111,629,661
singlet/doubletdoublet
Overlap geneGlipr1l3, Caps2
Upstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895
Downstream geneKcnc2, LOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020A07.bB6Ng01-020A07.g
ACCDH852933DH852934
length1,083737
definitionDH852933|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A07, 5' end.DH852934|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,628,565 - 111,629,661)(111,560,544 - 111,561,280)
sequence
gaattccaggcgcccagtgagtggtacaaacgcttccctatataagtctg
gaaccagtccaaaatgaagaattaagcacttagaataccaaaggtgactt
ctttcattcaccaagttggtgaggaagcatggtttgggcacacagcaata
ataggggaagtgtttgtcactagactcacacagactaattgtttctttgt
acagaagagaaacctgcaaagttcaggtcaggggtgaaatgtgtgtctgc
aggaagctgcctccagagggaagagaagagagagggctacgctgcacaca
ccaaccttgctgccaagttatgaagcagagagccttccttctcctttgga
gagaacaaaggagttggaagccatgcttaaaatcctaatgaagaaacccc
atggggtttgtctgagccggattgactttaaacaagcggcaaggacttgt
tatgaagcaatactaagacaggtgcaagaaaccagagaggagactgaaaa
gcggggcccaagttatctgcgcagttatgacagcttgacatgcgacatag
gaaaactcaaaattcagggtgatatttactttcaagtaggcttagactta
tcaaaggaagatacaaaaggcactaacaatgtaagaagagattagtaagt
tggtcaaactctgtgaaaggacatctggatgaacaatgcacagatggaaa
ttaatcgccatcattagtccccagtgaattgcaaattgaaatcaccaata
cagtagagaagttcaatttaaaaatcatagggaacatcaagtgctggcaa
agatggacgggaccactcatcctgccacgagggttactatttgccttgag
gagctgaatgcaggcaaactacttggtccagagagtctaaactcactcaa
catacaggagtatgtgtgtttaccagaatggcatgcacaacagagttcac
cacagtatattccataattcgcagcatgttaagctccggtgcgtggtgag
ctttggtatttctatatgaataatgggagcaaaagaaaacatcgaattca
tctgtagtgtgatttcctaaattaatgttgagg
gaattcactaaggctctcaaaggcatttgttgtggataggcctggtgctg
atcttgtaaaccaatcccttaatgaataaaggagccaatcactgagcaag
taggcgggacttccaggttgggtggaggaagagaggaaacaggagagagt
taggttctttttggaatggggacagagatggataagatgtagctgctaca
gtttccagggatctgccttcggaggaatcagattttaataaggtttacaa
gattaggtttcagttgtgcccagagattgagttgccattgtttctgaact
aagtctgtattgtttttcttaaggcggtggcagccgcaagtgggaaccta
gagggctgggtggagagattgtggagttctgagtcagtctccagcacatt
aaaaacaggtcggccagtgcatggccggcaaagctgttctggcagagttg
atgccactagggtgggaatgtgccagttagatatttttttaacatttcct
gctacaggcattgatgtttagaactgaaatttggttggctacttttattg
ctcacaacgtgactttgtttgcgacaggaccttgctatatatggctggcc
ttgaattcttggtcctttgagtgttttcaaggctggaattaaatgtgggt
accaccaggcccagttactttccccactgcacacatagtttggaagtttt
gaggatttataatttcaaggtttgaaatccaagtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111628565_111629661
seq2: B6Ng01-020A07.b_44_1126 (reverse)

seq1  CCTCAACATTATATTTAGGAGAATCACACTCATGATGTGATCTCTGGTTG  50
      ||||||||||| |||||||| |||||||||   ||||   ||  ||    
seq2  CCTCAACATTA-ATTTAGGA-AATCACACTACAGATGAATTCGATG----  44

seq1  TTTTTCTCTTTGCTTCCCATTATTCCATTATACGAATACACAACAGCTCA  100
       |||||| ||||| |||||||||||   ||||  ||||| ||| ||||||
seq2  -TTTTCT-TTTGC-TCCCATTATTC--ATATAGAAATAC-CAA-AGCTCA  87

seq1  CCACGCACCGGTGCTTAACATGCCTGCTGAATTATGGATTATACTGTGGT  150
      ||||||||||| |||||||||| |||| |||||||||| |||||||||||
seq2  CCACGCACCGGAGCTTAACATG-CTGC-GAATTATGGAATATACTGTGGT  135

seq1  GAACTCTGTTGTGCATGCC-TTCTGGTAAACACACATACTCCTGTATGTT  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAACTCTGTTGTGCATGCCATTCTGGTAAACACACATACTCCTGTATGTT  185

seq1  GAGTGAGTTTAGACTCTCTGGACCATGTAGTTTGCCTGCATTCAGCTCCT  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGTGAGTTTAGACTCTCTGGACCAAGTAGTTTGCCTGCATTCAGCTCCT  235

seq1  CAAGGCAAATAGTAACCCTCGTGGCAGGATGAGTGGTCCCGTCCATCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAATAGTAACCCTCGTGGCAGGATGAGTGGTCCCGTCCATCTTT  285

seq1  GCCAGCACTTGATGTTCCCTATGATTTTTAAATTGAACTTCTCTACTGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACTTGATGTTCCCTATGATTTTTAAATTGAACTTCTCTACTGTA  335

seq1  TTGGTGATTTCAATTTGCAATTCACTGGGGACTAATGATGGCGATTAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATTTCAATTTGCAATTCACTGGGGACTAATGATGGCGATTAATT  385

seq1  TCCATCTGTGCATTGTTCATCCAGATGTCCTTTCACAGAGTTTGACCAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGTGCATTGTTCATCCAGATGTCCTTTCACAGAGTTTGACCAAC  435

seq1  TTACTAATCTCTTCTTACATTGTTAGTGCCTTTTGTATCTTCCTTTGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATCTCTTCTTACATTGTTAGTGCCTTTTGTATCTTCCTTTGATA  485

seq1  AGTCTAAGCCTACTTGAAAGTAAATATCACCCTGAATTTTGAGTTTTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGCCTACTTGAAAGTAAATATCACCCTGAATTTTGAGTTTTCCT  535

seq1  ATGTCGCATGTCAAGCTGTCATAACTGCGCAGATAACTTGGGCCCCGCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGCATGTCAAGCTGTCATAACTGCGCAGATAACTTGGGCCCCGCTT  585

seq1  TTCAGTCTCCTCTCTGGTTTCTTGCACCTGTCTTAGTATTGCTTCATAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTCCTCTCTGGTTTCTTGCACCTGTCTTAGTATTGCTTCATAAC  635

seq1  AAGTCCTTGCCGCTTGTTTAAAGTCAATCCGGCTCAGACAAACCCCATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTGCCGCTTGTTTAAAGTCAATCCGGCTCAGACAAACCCCATGG  685

seq1  GGTTTCTTCATTAGGATTTTAAGCATGGCTTCCAACTCCTTTGTTCTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTCATTAGGATTTTAAGCATGGCTTCCAACTCCTTTGTTCTCTC  735

seq1  CAAAGGAGAAGGAAGGCTCTCTGCTTCATAACTTGGCAGCAAGGTTGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGAAGGAAGGCTCTCTGCTTCATAACTTGGCAGCAAGGTTGGTG  785

seq1  TGTGCAGCGTAGCCCTCTCTCTTCTCTTCCCTCTGGAGGCAGCTTCCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCGTAGCCCTCTCTCTTCTCTTCCCTCTGGAGGCAGCTTCCTGC  835

seq1  AGACACACATTTCACCCCTGACCTGAACTTTGCAGGTTTCTCTTCTGTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACATTTCACCCCTGACCTGAACTTTGCAGGTTTCTCTTCTGTAC  885

seq1  AAAGAAACAATTAGTCTGTGTGAGTCTAGTGACAAACACTTCCCCTATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACAATTAGTCTGTGTGAGTCTAGTGACAAACACTTCCCCTATTA  935

seq1  TTGCTGTGTGCCCAAACCATGCTTCCTCACCAACTTGGTGAATGAAAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGTGCCCAAACCATGCTTCCTCACCAACTTGGTGAATGAAAGAA  985

seq1  GTCACCTTTGGTATTCTAAGTGCTTAATTCTTCATTTTGGACTGGTTCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTTTGGTATTCTAAGTGCTTAATTCTTCATTTTGGACTGGTTCCA  1035

seq1  GACTTATATAGGGAAGCGTTTGTACCACTCACTGGGCGCCTGGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATATAGGGAAGCGTTTGTACCACTCACTGGGCGCCTGGAATTC  1083

seq1: chr10_111560544_111561280
seq2: B6Ng01-020A07.g_68_804

seq1  GAATTCACTAAGGCTCTCAAAGGCATTTGTTGTGGATAGGCCTGGTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAGGCTCTCAAAGGCATTTGTTGTGGATAGGCCTGGTGCTG  50

seq1  ATCTTGTAAACCAATCCCTTAATGAATAAAGGAGCCAATCACTGAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTAAACCAATCCCTTAATGAATAAAGGAGCCAATCACTGAGCAAG  100

seq1  TAGGCGGGACTTCCAGGTTGGGTGGAGGAAGAGAGGAAACAGGAGAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGGGACTTCCAGGTTGGGTGGAGGAAGAGAGGAAACAGGAGAGAGT  150

seq1  TAGGTTCTTTTTGGAATGGGGACAGAGATGGATAAGATGTAGCTGCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTTTTTGGAATGGGGACAGAGATGGATAAGATGTAGCTGCTACA  200

seq1  GTTTCCAGGGATCTGCCTTCGGAGGAATCAGATTTTAATAAGGTTTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGGGATCTGCCTTCGGAGGAATCAGATTTTAATAAGGTTTACAA  250

seq1  GATTAGGTTTCAGTTGTGCCCAGAGATTGAGTTGCCATTGTTTCTGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGTTTCAGTTGTGCCCAGAGATTGAGTTGCCATTGTTTCTGAACT  300

seq1  AAGTCTGTATTGTTTTTCTTAAGGCGGTGGCAGCCGCAAGTGGGAACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTATTGTTTTTCTTAAGGCGGTGGCAGCCGCAAGTGGGAACCTA  350

seq1  GAGGGCTGGGTGGAGAGATTGTGGAGTTCTGAGTCAGTCTCCAGCACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGGGTGGAGAGATTGTGGAGTTCTGAGTCAGTCTCCAGCACATT  400

seq1  AAAAACAGGTCGGCCAGTGCATGGCCGGCAAAGCTGTTCTGGCAGAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGGTCGGCCAGTGCATGGCCGGCAAAGCTGTTCTGGCAGAGTTG  450

seq1  ATGCCACTAGGGTGGGAATGTGCCAGTTAGATATTTTTTTAACATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTAGGGTGGGAATGTGCCAGTTAGATATTTTTTTAACATTTCCT  500

seq1  GCTACAGGCATTGATGTTTAGAACTGAAATTTGGTTGGCTACTTTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGCATTGATGTTTAGAACTGAAATTTGGTTGGCTACTTTTATTG  550

seq1  CTCACAACGTGACTTTGTTTGCGACAGGACCTTGCTATATATGGCTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACGTGACTTTGTTTGCGACAGGACCTTGCTATATATGGCTGGCC  600

seq1  TTGAATTCTTGGTCCTTTGAGTGTTTCAAAGGCTGGAATTAAATGTGGGT  650
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TTGAATTCTTGGTCCTTTGAGTGTTTTCAAGGCTGGAATTAAATGTGGGT  650

seq1  ACCACCAGGCCCAGTTACTTTCCCCACTGCACACATAGTTTGGAAG-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACCACCAGGCCCAGTTACTTTCCCCACTGCACACATAGTTTGGAAGTTTT  700

seq1  GAGGAGTTAGTAATTTCGAGGTTGAAATTCCAAGTTTT  737
      ||||| ||| ||||||| |||||  || ||||||||||
seq2  GAGGATTTA-TAATTTCAAGGTTTGAAATCCAAGTTTT  737