BAC Information

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BAC

Clone NameB6Ng01-020F04
Chromosome10 (Build37)
Map Location 118,288,376 - 118,434,162
singlet/doubletdoublet
Overlap geneDyrk2, LOC668223
Upstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850
Downstream geneLOC100042861, LOC674417, Cand1, Grip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020F04.bB6Ng01-020F04.g
ACCDH853155DH853156
length1,0261,104
definitionDH853155|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F04, 5' end.DH853156|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,288,376 - 118,289,403)(118,433,032 - 118,434,162)
sequence
gaattccattgagacctggctggaaacaccccctttgaagctttgtatcc
agggccactacaaatgaccttctaaagaaatataaactcctcccggtcat
tgttagtgttgttgttttgataaaccaagcgcaacaagcatgactactgt
gttctatccttcaagtgcctttatcaaaccttatctgaaatctctctttc
catggtttccatgagagactgaaaatattaaatgacaaacttcagaaata
agtaattaaatttttttaaactgcataccacactgagtagaatctcatac
tataccacctgggccatggatacattccatacatccaaggtatgcatgct
catatacattaaacaccaatcgtatgtaaccgccagggttatcaggtcag
ttttcacagactcacgagtagcatccattcttgcaataacagcctcaaac
agtcaacattgtactgatcccaaacattttatcattttatctcactgtat
gttattctagttcattgttagccgattgtcacctctttctgagcctactt
tatgtaaatatagtgttcagtgttatcaaccgcttcagatattcaggaaa
cggtgaagagaggcctgcagggaagagaggggcaggagaggagtctagcc
tgggagagtatgtttgctggtgagttgggtttagctggtctttacaaact
tacccttggcctgtgtgtgtatatgtccaatgatctctttaaacctgaaa
gctgcccgaagttcttttcaatggacgagtaagtgggatttcactcaaag
gcttcaacaagtcttcagcaaagtctagtgttcagccgcacttcacactt
gaaccaagcacagtcatcttcgattctctctgaacaaacggggtatctca
gtcgacgttgattccaggaagcaaactcgaaatacctgcagctacttctg
atgcaccaacacctgctactcctattttcatactctgcatccccatcatc
ttcatcagaaaacccccaccccagcc
gaattctgcctttaaatggaaaagacattaagatctagaatacatgggct
gaacaagaacctgtccttgctatgtgccagcgactggtagaagcacttta
acctttacaagcacctccgagaaacatagttctactatgtccgtttgaca
ctggggaaagccaggcacagagggatcaaataacatactgcgaatcattc
agctaactaccggctgagtcgagatttgaacccatcatggccagttccag
aaaagagagaaaattaaaaaaaaaaaaaaagtcaagttaaatttcattta
aaatttccccgtgtgcaaatgggctcaggagctgactcctgtggacgttt
acctctcgcccaccagtgttccaattctcttctctctggtgaactgaggg
tgacacttgtcagttgtgaactttcttagcttcccagggaggtagtactt
taaagcatctcgtttgactctcctggggagacactctacccacccagtca
ctatagggcactaatgacaagccaaagattgcatccaagtttgtcttgat
ggaccagtgagtttattggggttgctcacaggagcataggtgaggagtta
gctatgggaacatagatgactaagcgtcaggtgcagcagcaaacagttga
ctccagcttaggtgacagctaataaaagctgtatccctgaagcctatgca
tgactggcaagcagacctagtgctcagattgccttcgtccaagcaattgc
tactgcacatagaaccttggggtaggggttcttgggagtcttgtaaattt
taggaacttcctgggtcttgcattgtaattgcaggatttttcacctctgc
ccccattctggaaataatgactcttgagacttattatatatgactagtgc
ttcagcacaagttttggctcattcctcaacgagcttgtaatcaattaaac
agtttctatcctataagtgcacaagctggttactcctctctgtttcatga
gttgtctctcagagtcaaggcaatccttctgctgctcctgactctatccc
agagtcttctctcttactcgttctatctctctcccctcctattcgaactc
aggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_118288376_118289403
seq2: B6Ng01-020F04.b_44_1069

seq1  GAATTCCATTGAGACCTGGCTGGAAACACCCCCTTTGAAGCTTTGTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGAGACCTGGCTGGAAACACCCCCTTTGAAGCTTTGTATCC  50

seq1  AGGGCCACTACAAATGACCTTCTAAAGAAATATAAACTCCTCCCGGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCACTACAAATGACCTTCTAAAGAAATATAAACTCCTCCCGGTCAT  100

seq1  TGTTAGTGTTGTTGTTTTGATAAACCAAGCGCAACAAGCATGACTACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTGTTGTTGTTTTGATAAACCAAGCGCAACAAGCATGACTACTGT  150

seq1  GTTCTATCCTTCAAGTGCCTTTATCAAACCTTATCTGAAATCTCTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATCCTTCAAGTGCCTTTATCAAACCTTATCTGAAATCTCTCTTTC  200

seq1  CATGGTTTCCATGAGAGACTGAAAATATTAAATGACAAACTTCAGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTCCATGAGAGACTGAAAATATTAAATGACAAACTTCAGAAATA  250

seq1  AGTAATTAAATTTTTTTAAACTGCATACCACACTGAGTAGAATCTCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTAAATTTTTTTAAACTGCATACCACACTGAGTAGAATCTCATAC  300

seq1  TATACCACCTGGGCCATGGATACATTCCATACATCCAAGGTATGCATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCACCTGGGCCATGGATACATTCCATACATCCAAGGTATGCATGCT  350

seq1  CATATACATTAAACACCAATCGTATGTAACCGCCAGGGTTATCAGGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATTAAACACCAATCGTATGTAACCGCCAGGGTTATCAGGTCAG  400

seq1  TTTTCACAGACTCACGAGTAGCATCCATTCTTGCAATAACAGCCTCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGACTCACGAGTAGCATCCATTCTTGCAATAACAGCCTCAAAC  450

seq1  AGTCAACATTGTACTGATCCCAAACATTTTATCATTTTATCTCACTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACATTGTACTGATCCCAAACATTTTATCATTTTATCTCACTGTAT  500

seq1  GTTATTCTAGTTCATTGTTAGCCGATTGTCACCTCTTTCTGAGCCTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTAGTTCATTGTTAGCCGATTGTCACCTCTTTCTGAGCCTACTT  550

seq1  TATGTAAATATAGTGTTCAGTGTTATCAACCGCTTCAGATATTCAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAATATAGTGTTCAGTGTTATCAACCGCTTCAGATATTCAGGAAA  600

seq1  CGGTGAAGAGAGGCCTGCAGGGAAGAGAGGGGCAGGAGAGGAGTCTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAAGAGAGGCCTGCAGGGAAGAGAGGGGCAGGAGAGGAGTCTAGCC  650

seq1  TGGGAGAGTATGTTTGCTGGTGAGTTGGGTTTAGCTGGTCTTTACAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGTATGTTTGCTGGTGAGTTGGGTTTAGCTGGTCTTTACAAACT  700

seq1  TACCCTTGGCCTGTGTGTGTATATGTCCAATGATCTCTTTAAACCTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTGGCCTGTGTGTGTATATGTCCAATGATCTCTTTAAACCTGAAA  750

seq1  GCTGCCCGAAGTTCTTTTCAATGGACGAGTAAGTGGGATTTCACTCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCGAAGTTCTTTTCAATGGACGAGTAAGTGGGATTTCACTCAAAG  800

seq1  GCTTCAACAAGTCTTCAGCAAAGTCTAGTGTTCAGCCGCACTTCACACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAACAAGTCTTCAGCAAAGTCTAGTGTTCAGCCGCACTTCACACTT  850

seq1  GAACCAAGCACAGTCATCTTCGATTCTCTCTGAACAAACGGGGTATCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGCACAGTCATCTTCGATTCTCTCTGAACAAACGGGGTATCTCA  900

seq1  GTCGACGTTGATTCCAGGAAGCAAACTCGAAATACCTGCAGCTACTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGACGTTGATTCCAGGAAGCAAACTCGAAATACCTGCAGCTACTTCTG  950

seq1  ATGCACCAACACCTGCTACTTCTATTTTCATACTCTGCATCCCCATCCAT  1000
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  ATGCACCAACACCTGCTACTCCTATTTTCATACTCTGCATCCCCAT-CAT  999

seq1  CTTCATCAGATACCCCCCACCCCCAGCC  1028
      |||||||||| | |||||| ||||||||
seq2  CTTCATCAGAAAACCCCCA-CCCCAGCC  1026

seq1: chr10_118433032_118434162
seq2: B6Ng01-020F04.g_66_1169 (reverse)

seq1  CCCTGAGATCGGAAATAGGAGGTGGAAGGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||| |||  ||||||||           | |||||||| |||  ||
seq2  CCCTGAGTTCG--AATAGGAG-----------GGGAGAGAGATAGAACGA  37

seq1  GAGAGAGAGAAGAACTCTGGGATAGAGTCAGGAGCAAGCAGGAAGAGATT  100
      |  ||||||||| |||||||||||||||||||||| ||||| | ||   |
seq2  GTAAGAGAGAAG-ACTCTGGGATAGAGTCAGGAGC-AGCAGAAGGA---T  82

seq1  TGCCCTGACCTCTGAGAAGACAGACTCATGAAACAGAGAGGAAGTAACCA  150
      |||| ||| ||||||| ||||| |||||||||||||||||| ||||||||
seq2  TGCCTTGA-CTCTGAG-AGACA-ACTCATGAAACAGAGAGG-AGTAACCA  128

seq1  GCCTTGTGGCACTTATAGGATAGAAACTGTTTAATTGAATTACAAGCTCG  200
      | ||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  G-CTTGT-GCACTTATAGGATAGAAACTGTTTAATTG-ATTACAAGCTCG  175

seq1  TTGAGGAATGAGCCAAAACTTGTGGCTGAAGCACTTAGTCATATATAATA  250
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TTGAGGAATGAGCCAAAACTTGT-GCTGAAGCAC-TAGTCATATATAATA  223

seq1  AGTCTCAAGAGTCATTATTTCCAGAATGGGGGCAGAGGTGAAAAATCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAGAGTCATTATTTCCAGAATGGGGGCAGAGGTGAAAAATCCTG  273

seq1  CAATTACAATGCAAGACCCAGGAAGTTCCTAAAATTTACAAGACTCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACAATGCAAGACCCAGGAAGTTCCTAAAATTTACAAGACTCCCAA  323

seq1  GAACCCCTACCCCAAGGTTCTATGTGCAGTAGCAATTGCTTGGACGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCTACCCCAAGGTTCTATGTGCAGTAGCAATTGCTTGGACGAAGG  373

seq1  CAATCTGAGCACTAGGTCTGCTTGCCAGTCATGCATAGGCTTCAGGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGAGCACTAGGTCTGCTTGCCAGTCATGCATAGGCTTCAGGGATA  423

seq1  CAGCTTTTATTAGCTGTCACCTAAGCTGGAGTCAACTGTTTGCTGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTATTAGCTGTCACCTAAGCTGGAGTCAACTGTTTGCTGCTGCA  473

seq1  CCTGACGCTTAGTCATCTATGTTCCCATAGCTAACTCCTCACCTATGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACGCTTAGTCATCTATGTTCCCATAGCTAACTCCTCACCTATGCTC  523

seq1  CTGTGAGCAACCCCAATAAACTCACTGGTCCATCAAGACAAACTTGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCAACCCCAATAAACTCACTGGTCCATCAAGACAAACTTGGATG  573

seq1  CAATCTTTGGCTTGTCATTAGTGCCCTATAGTGACTGGGTGGGTAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTGGCTTGTCATTAGTGCCCTATAGTGACTGGGTGGGTAGAGTG  623

seq1  TCTCCCCAGGAGAGTCAAACGAGATGCTTTAAAGTACTACCTCCCTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGGAGAGTCAAACGAGATGCTTTAAAGTACTACCTCCCTGGGA  673

seq1  AGCTAAGAAAGTTCACAACTGACAAGTGTCACCCTCAGTTCACCAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGAAAGTTCACAACTGACAAGTGTCACCCTCAGTTCACCAGAGAG  723

seq1  AAGAGAATTGGAACACTGGTGGGCGAGAGGTAAACGTCCACAGGAGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTGGAACACTGGTGGGCGAGAGGTAAACGTCCACAGGAGTCAG  773

seq1  CTCCTGAGCCCATTTGCACACGGGGAAATTTTAAATGAAATTTAACTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGCCCATTTGCACACGGGGAAATTTTAAATGAAATTTAACTTGA  823

seq1  CTTTTTTTTTTTTTTTAATTTTCTCTCTTTTCTGGAACTGGCCATGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTAATTTTCTCTCTTTTCTGGAACTGGCCATGATGG  873

seq1  GTTCAAATCTCGACTCAGCCGGTAGTTAGCTGAATGATTCGCAGTATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCTCGACTCAGCCGGTAGTTAGCTGAATGATTCGCAGTATGTT  923

seq1  ATTTGATCCCTCTGTGCCTGGCTTTCCCCAGTGTCAAACGGACATAGTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCCCTCTGTGCCTGGCTTTCCCCAGTGTCAAACGGACATAGTAG  973

seq1  AACTATGTTTCTCGGAGGTGCTTGTAAAGGTTAAAGTGCTTCTACCAGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTTTCTCGGAGGTGCTTGTAAAGGTTAAAGTGCTTCTACCAGTC  1023

seq1  GCTGGCACATAGCAAGGACAGGTTCTTGTTCAGCCCATGTATTCTAGATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCACATAGCAAGGACAGGTTCTTGTTCAGCCCATGTATTCTAGATC  1073

seq1  TTAATGTCTTTTCCATTTAAAGGCAGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  TTAATGTCTTTTCCATTTAAAGGCAGAATTC  1104