BAC Information

Click to search

BAC

Clone NameB6Ng01-020L18
Chromosome10 (Build37)
Map Location 104,394,992 - 104,523,587
singlet/doubletdoublet
Overlap geneLOC100042383
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020L18.bB6Ng01-020L18.g
ACCDH853446DH853447
length1,031268
definitionDH853446|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L18, 5' end.DH853447|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,522,552 - 104,523,587)(104,394,992 - 104,395,259)
sequence
gaattcctttggactttttctatgagggcagcatgccactcatgacggct
tcatgacctagtcagctccccaaaggtcacatctcttatctccatttctt
ttgagatcagaatttcaggtgtgcacttggaaaaacagaaaaggactgta
gtctctaacctgtttattcaaatagcaatcatttttgaatacaaactgta
acatccaccaatggtgtttatcagtcatctgggaatccccatcacaacca
ccggtacatataaaatcaatactcacatttccatcaaaattgcccaacta
ttaatgtatgcacaacagttctaactctgtctaaaactgatcatttttag
taaaacttgtaatgctccaaaacatggcactggactgaactgaaggtcca
ttcccaagcaatatataattctcattctactagaatgtttttctatttga
gagtgcagagattattacaattataattcataatggattgattttttata
tagcatctgaggggcttctggtaagtggggaaaaatcctcatttggtaat
acagaacatgtctggactgtcttttctctccgctgtagcctcttttaggc
cactggatgtttcttgctttcacccatctgtatattgcatgtcaggagga
ggagggatggggaagtagcaaaatcctaccatgctgaggcacaggaggac
ggaactctgatttcacgaccactcatgtctgagaggtgcctgcacattta
cagttcctctagtctactcaggaaatgagacttaatacaatttctacaat
tcactctctcatctgggaggatgattaatgacgatgacatttagcctgat
tgttgtgctctttaggaagatattctagacgaaagactttcatttccagg
ctccagctggagatggcatggtttgaggatgatatactgtttggctgttg
cactaccacattcttaggaacagttttatcctggtcttcttgtagactcc
aaggaatggtcttattgttttgaagaaaaga
cttttgttataaaatatgtaaagaaaacataagctgataaaattatggta
aaataatattgaatatcatgttaactctctataaaatatagttctgaaga
aaattttgattattttagtagtgttgtattttataaaaagaagagaggga
aggaatgtgtttggtgggtgttatagtcaggtgtggggcaaggggatgcc
tgtgttggtccatgcttaagcatccatttgccctgaaagaccagcttctg
gtttgtatagtatataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104522552_104523587
seq2: B6Ng01-020L18.b_46_1076 (reverse)

seq1  TCTTTTCTTCAAAACAAATAGACCATTCCTTGTGAGTCTGACAGGAAGGA  50
      |||||||||||||||||  ||||||||||||| |||||| ||| ||| ||
seq2  TCTTTTCTTCAAAACAATAAGACCATTCCTTG-GAGTCT-ACAAGAA-GA  47

seq1  CCAGGATAGAAACCTGTACTTAAGAATGTGGTTAGTGCAACAGCCAAACA  100
      |||||||  ||| |||| | ||||||||||| ||||||||||||||||||
seq2  CCAGGAT--AAAACTGTTCCTAAGAATGTGG-TAGTGCAACAGCCAAACA  94

seq1  GTATATCATCCTCAAACCATGCCATCTCCAGCTGGAGCCTGGAAATGAGA  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTATATCATCCTCAAACCATGCCATCTCCAGCTGGAGCCTGGAAATGAAA  144

seq1  GTCCTTCGTCTAGAATATCTTCCTAAAGAGCACAACAATCAGGCTAAATG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCGTCTAGAATATCTTCCTAAAGAGCACAACAATCAGGCTAAATG  194

seq1  TCATCGTCATTAATCATCCTCCCAGATGAGAGAGTGAATTGTAGAAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTCATTAATCATCCTCCCAGATGAGAGAGTGAATTGTAGAAATTG  244

seq1  TATTAAGTCTCATTTCCTGAGTAGACTAGAGGAACTGT-AATGTGCAGGC  299
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTAAGTCTCATTTCCTGAGTAGACTAGAGGAACTGTAAATGTGCAGGC  294

seq1  ACCTCTCAGACCTGAGTGGTCGTGAAATCAGAGTTCCGTCCTCCTGTGCC  349
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCAGACATGAGTGGTCGTGAAATCAGAGTTCCGTCCTCCTGTGCC  344

seq1  TCAGCATGGTAGGATTTTGCTACTTCCCCATCCCTCCTCCTCCTGACATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGGTAGGATTTTGCTACTTCCCCATCCCTCCTCCTCCTGACATG  394

seq1  CAATATACAGATGGGTGAAAGCAAGAAACATCCAGTGGCCTAAAAGAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACAGATGGGTGAAAGCAAGAAACATCCAGTGGCCTAAAAGAGGC  444

seq1  TACAGCGGAGAGAAAAGACAGTCCAGACATGTTCTGTATTACCAAATGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCGGAGAGAAAAGACAGTCCAGACATGTTCTGTATTACCAAATGAG  494

seq1  GATTTTTCCCCACTTACCAGAAGCCCCTCAGATGCTATATAAAAAATCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCCCCACTTACCAGAAGCCCCTCAGATGCTATATAAAAAATCAA  544

seq1  TCCATTATGAATTATAATTGTAATAATCTCTGCACTCTCAAATAGAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATGAATTATAATTGTAATAATCTCTGCACTCTCAAATAGAAAAA  594

seq1  CATTCTAGTAGAATGAGAATTATATATTGCTTGGGAATGGACCTTCAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGTAGAATGAGAATTATATATTGCTTGGGAATGGACCTTCAGTT  644

seq1  CAGTCCAGTGCCATGTTTTGGAGCATTACAAGTTTTACTAAAAATGATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGTGCCATGTTTTGGAGCATTACAAGTTTTACTAAAAATGATCA  694

seq1  GTTTTAGACAGAGTTAGAACTGTTGTGCATACATTAATAGTTGGGCAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGACAGAGTTAGAACTGTTGTGCATACATTAATAGTTGGGCAATT  744

seq1  TTGATGGAAATGTGAGTATTGATTTTATATGTACCGGTGGTTGTGATGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAAATGTGAGTATTGATTTTATATGTACCGGTGGTTGTGATGGG  794

seq1  GATTCCCAGATGACTGATAAACACCATTGGTGGATGTTACAGTTTGTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCAGATGACTGATAAACACCATTGGTGGATGTTACAGTTTGTATT  844

seq1  CAAAAATGATTGCTATTTGAATAAACAGGTTAGAGACTACAGTCCTTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGATTGCTATTTGAATAAACAGGTTAGAGACTACAGTCCTTTTC  894

seq1  TGTTTTTCCAAGTGCACACCTGAAATTCTGATCTCAAAAGAAATGGAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCCAAGTGCACACCTGAAATTCTGATCTCAAAAGAAATGGAGAT  944

seq1  AAGAGATGTGACCTTTGGGGAGCTGACTAGGTCATGAAGCCGTCATGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGTGACCTTTGGGGAGCTGACTAGGTCATGAAGCCGTCATGAGT  994

seq1  GGCATGCTGCCCTCATAGAAAAAGTCCAAAGGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  GGCATGCTGCCCTCATAGAAAAAGTCCAAAGGAATTC  1031

seq1: chr10_104394992_104395259
seq2: B6Ng01-020L18.g_71_338

seq1  CTTTTGTTATAAAATATGTAAAGAAAACATAAGCTGATAAAATTATGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTATAAAATATGTAAAGAAAACATAAGCTGATAAAATTATGGTA  50

seq1  AAATAATATTGAATATCATGTTAACTCTCTATAAAATATAGTTCTGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATTGAATATCATGTTAACTCTCTATAAAATATAGTTCTGAAGA  100

seq1  AAATTTTGATTATTTTAGTAGTGTTGTATTTTATAAAAAGAAGAGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGATTATTTTAGTAGTGTTGTATTTTATAAAAAGAAGAGAGGGA  150

seq1  AGGAATGTGTTTGGTGGGTGTTATAGTCAGGTGTGGGGCAAGGGGATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTGTTTGGTGGGTGTTATAGTCAGGTGTGGGGCAAGGGGATGCC  200

seq1  TGTGTAGGCCCATGCTGAAGCATCCATTTGCCCTGAAAGACCAGCCACAG  250
      ||||| || ||||||| ||||||||||||||||||||||||||||  | |
seq2  TGTGTTGGTCCATGCTTAAGCATCCATTTGCCCTGAAAGACCAGCTTCTG  250

seq1  GAAGGTATAGTATAGAAT  268
      |   |||||||||| |||
seq2  GTTTGTATAGTATATAAT  268