BAC Information

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BAC

Clone NameB6Ng01-020N01
Chromosome1 (Build37)10 (Build37)
Map Location 83,933,233 - 83,934,390104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N01.bB6Ng01-020N01.g
ACCDH853504DH853505
length1,139919
definitionDH853504|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N01, 5' end.DH853505|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,933,233 - 83,934,390)(104,053,903 - 104,054,363)
sequence
gaattctttttcatgacctctccttaaataaatctcagaagacttgtctg
cctttcagttttccaaccaagaagtgtagcatccaactacacactcatag
aaacaaaactatactcatctgtactggccacacaatggcttcctaaatgg
ttacaggagccaaacctagtcccttctttggcaaatgttgtagaattgct
tttattctgtgtagtagtacctctttaaaccactggcctgtactaacaca
aaatgtaccaggacttgtgctgaaatggaaatgattgtcctgtcattagt
aagtcggggagaaggttttcccactatgtgttagggctcttaggttgtac
tttcacatggacagagggtggtgaaccagctttttgtacaaatgctccgt
ggtcacttcaggatataaatagagatggctgtcagctcctgaggttaaga
ttgggcatccacttatctcaccctgaagaatcacaccatatctgctttgt
tttcattttgtctgacttctggaccaagaaatgatattccttcttcgtgt
ttctttggcattcttttcatatctgttttataacactcaccttattttgt
gtcatttcattgttctcatttcaatgaaccttcttcctgttagtctgtga
tgttcttgaaagaaagattgccaccctttccttgagaaatattggaattg
aacatgcaatttaattgcaacacaatcaacagttgttgaaccagtgaatg
aggaattaataagaaagtgggtagattcacaccagtcagaatggctaaga
tcaaaaattcagtgacagcagatgctggcgtggatgtggagaaagaggac
actcctccattgttggtgggattgcagcttgtacaaccactctggaaatc
agtctggcggttcctcagaaaattggacatggtactacagagatcagcaa
tacctctcctgggcatatatcacaagatccctcaaatggtagaaagacac
atgctcactaatgtcatagcagcttaattataaatagccagaagctggaa
gaacccagatgtccctcacaaaggaatgatcaaaaaatgtgggtactcct
acactgaagtctacctagcttaaaaagaatgaatatgaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaatcctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccatttttggt
gggattgcaggcttgtacaaccactctggaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacccctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgactgaggtaacacattcacaaa
ggaactcacacaatatgactgataagtggatgttagcccaaaacctagga
tacccaagatataagatacaatttcctaaacacatgaaactcaagaaaaa
tgaagactgaagtgtggacactatgcccctccttagaattgggaacaaaa
cacccatggaaggagttacagagacaaagtttggagctgagatgaaagga
tggaccatgtagagactgccatatccagggatccaccccataatcagctt
ccaaatgctgacaccattgcatacactagcaagattttattgaaaggacc
cagatgtagctctctcttgtgagactatgccagggcctagcaaacaccga
agtggatgctcacagtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83933233_83934390
seq2: B6Ng01-020N01.b_44_1182 (reverse)

seq1  TTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGAT  50
      |||||  ||||||||||||||  ||||  |||| ||| ||  ||||||  
seq2  TTCAT--ATTCATTCTTTTTA--AGCTAGGTAG-ACTTCA--GTGTAGGA  43

seq1  GTA-CCACATTTTTTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCT  99
      ||| |||||||||||| || ||||||| || |||||||||||||||||| 
seq2  GTACCCACATTTTTTG-AT-CATTCCTTTG-TGAGGGACATCTGGGTTC-  89

seq1  TTCCAGCTTCTGGCTA-TTATAAATAAGGCTGCTATGAACATAGTGGAGC  148
      |||||||||||||||| |||||| ||| ||||||||||   |||| ||||
seq2  TTCCAGCTTCTGGCTATTTATAATTAA-GCTGCTATGACATTAGT-GAGC  137

seq1  ATGTGTCCTTCTTACCATTTGGGGGATCTTGTGGATATATGCCCAGGAGA  198
      ||||||| ||| ||||||||| |||||||||| |||||||||||||||||
seq2  ATGTGTCTTTC-TACCATTTGAGGGATCTTGT-GATATATGCCCAGGAGA  185

seq1  GGTATTGCTGGATCCTCTGGTAGTACCATGTCCAATTTTCTGAGGAACCG  248
      ||||||||| ||| |||| |||||||||||||||||||||||||||||||
seq2  GGTATTGCT-GAT-CTCT-GTAGTACCATGTCCAATTTTCTGAGGAACCG  232

seq1  CCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAAT  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGACTGATTTCCAGAGTGGTTGTACAAG-CTGCAATCCCACCAACAAT  281

seq1  GGAGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCT  348
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  GGAGGAGTG-TCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCA-CT  329

seq1  GAATTTTTGATCTTAGCCATTCTGACTGGTGTGAATCTACCCACTTTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTGATCTTAGCCATTCTGACTGGTGTGAATCTACCCACTTTCTT  379

seq1  ATTAATTCCTCATTCACTGGTTCAACAACTGTTGATTGTGTTGCAATTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCCTCATTCACTGGTTCAACAACTGTTGATTGTGTTGCAATTAA  429

seq1  ATTGCATGTTCAATTCCAATATTTCTCAAGGAAAGGGTGGCAATCTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGTTCAATTCCAATATTTCTCAAGGAAAGGGTGGCAATCTTTCT  479

seq1  TTCAAGAACATCACAGACTAACAGGAAGAAGGTTCATTGAAATGAGAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAACATCACAGACTAACAGGAAGAAGGTTCATTGAAATGAGAACA  529

seq1  ATGAAATGACACAAAATAAGGTGAGTGTTATAAAACAGATATGAAAAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGACACAAAATAAGGTGAGTGTTATAAAACAGATATGAAAAGAA  579

seq1  TGCCAAAGAAACACGAAGAAGGAATATCATTTCTTGGTCCAGAAGTCAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGAAACACGAAGAAGGAATATCATTTCTTGGTCCAGAAGTCAGA  629

seq1  CAAAATGAAAACAAAGCAGATATGGTGTGATTCTTCAGGGTGAGATAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAAACAAAGCAGATATGGTGTGATTCTTCAGGGTGAGATAAGT  679

seq1  GGATGCCCAATCTTAACCTCAGGAGCTGACAGCCATCTCTATTTATATCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCCAATCTTAACCTCAGGAGCTGACAGCCATCTCTATTTATATCC  729

seq1  TGAAGTGACCACGGAGCATTTGTACAAAAAGCTGGTTCACCACCCTCTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGACCACGGAGCATTTGTACAAAAAGCTGGTTCACCACCCTCTGT  779

seq1  CCATGTGAAAGTACAACCTAAGAGCCCTAACACATAGTGGGAAAACCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAAAGTACAACCTAAGAGCCCTAACACATAGTGGGAAAACCTTC  829

seq1  TCCCCGACTTACTAATGACAGGACAATCATTTCCATTTCAGCACAAGTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGACTTACTAATGACAGGACAATCATTTCCATTTCAGCACAAGTCC  879

seq1  TGGTACATTTTGTGTTAGTACAGGCCAGTGGTTTAAAGAGGTACTACTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATTTTGTGTTAGTACAGGCCAGTGGTTTAAAGAGGTACTACTAC  929

seq1  ACAGAATAAAAGCAATTCTACAACATTTGCCAAAGAAGGGACTAGGTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAAAAGCAATTCTACAACATTTGCCAAAGAAGGGACTAGGTTTG  979

seq1  GCTCCTGTAACCATTTAGGAAGCCATTGTGTGGCCAGTACAGATGAGTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTAACCATTTAGGAAGCCATTGTGTGGCCAGTACAGATGAGTAT  1029

seq1  AGTTTTGTTTCTATGAGTGTGTAGTTGGATGCTACACTTCTTGGTTGGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTCTATGAGTGTGTAGTTGGATGCTACACTTCTTGGTTGGAA  1079

seq1  AACTGAAAGGCAGACAAGTCTTCTGAGATTTATTTAAGGAGAGGTCATGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAGGCAGACAAGTCTTCTGAGATTTATTTAAGGAGAGGTCATGA  1129

seq1  AAAAGAATTC  1158
      ||||||||||
seq2  AAAAGAATTC  1139

seq1: chr10_104053903_104054363
seq2: B6Ng01-020N01.g_68_538 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||| | |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGTTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| |||||||||||||||||||||| || |||||||||||||||||||
seq2  TGGGACATCTTCTGGATATATGCCCAGGAGGGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| || |||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGA-TTCCAGAGT  249

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAAAAATGGAGGAGTGTTCCTCTTTC  299

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  349

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGATTGTTTTGATTTGCATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACA-TTTTTTCAGGTGCTTCTCTGCCATTC  439
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTTCAGGTGCTTCTCTGCCATTC  449

seq1  GGTATTCCTCAGGTGAGAATTC  461
      ||||||||||||||||||||||
seq2  GGTATTCCTCAGGTGAGAATTC  471