BAC Information

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BAC

Clone NameB6Ng01-020N12
Chromosome10 (Build37)
Map Location 7,471,854 - 7,472,944
singlet/doubletsinglet
Overlap geneKatna1
Upstream genePlekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1
Downstream geneBC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust, Sash1, LOC100039173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N12.bB6Ng01-020N12.g
ACCDH853526DH853527
length1,1891,073
definitionDH853526|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N12, 5' end.DH853527|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgacatagctaaagccttcgccagtgtttcaacagtcctagaaa
gtccttgagcaagaccatgggcttggaaattcagtaagaatgttgctatt
cagtgacattcagaattgcctctggcattaaactatcacttagaataaaa
gccaagtcgctcccatatacaggaatttacaatggtttaggaagtagatc
gggctgtggttttagagtgttgcattattcatgagatggttagctagaaa
ggaactccctagttagaaccatgacttgggtgtgaaagcccttgccctag
gagtgaaaagttctcacacctggcttctaagactatagttgaccttagat
agggctgactctgtctcagttattttattgcccagttcctgccagtcttt
gcgttttcattcctctgttttgtgtaagagtcattaagcatcctgtaacc
tcatttgtaccttgccgatgtgtcacccaacttccttattgtcttctgta
caaaaagtttgatgctcgatttgacaaattacattcagattctacacaac
ctctcctgtgtacatctgtctgtcatctcatctgacgctttgcccacccg
caactagagacccgttccacgaagacaaaggggcccagagggtcttcggc
aataatccctgtccatagatcaatgaatcactgctagccacctggtaagt
gccagtcagtgaatcagaccagtttgtctttctgtcagtcagtcaccatc
actgtcactcagacaatccttgtccatcagttaatgacatagtcactgtt
agtggattagtgttagcttagtgaatgtgttggtgccagctactgtcagt
gtccatctgtctgtttcagtgatccaaagacatccattagtgggtcactg
gggccatgactcagtgatgttgtcagtcagtgtctgtcagtcagcaacac
cagtcactgtcagccagtgcagacttaagcattgcattcgcagtttctga
tgcttgctgctgttttctgtttttctcagcacttttctgttgtgaagact
tgacagggtcctcatctgttgtctcgaaactctcacaaaatactatcagg
ggtcaagtcattgcctattcagcttgccctcacattgcatggacgaggat
gtcggatcggaacatgctagagtagacaatggagcaaac
gaattcttttgacaaattcagcaatatttttatctcataatggatggttt
tgaagatcctaggatggtatgaaaggagctatttaagacaatctgggtga
agagtagacatctgcctcttcaaaataccaattactagtagttaatcttt
tgataaagattaataaattaacagtcagttttccttttttgttaattgag
ttccaaacctttaatgtgattctcttccttttgtgtaatagaaaagttat
ttgtgtcagttgtgatggcatagacccaacatttgggaggcagagatagg
tggagctctgtgagtttgaggccaacctggtctacatatgagttccagga
cagctggggctaaattagtgaggctctatttaaaataaacaaacgaacaa
acaaactttgttatgaaatatcattcactttactctttgatctttgtcac
agtgttgtatataaatgtagtgcaatttggtacttagtgctattcctagg
caagctactgtacaagggcgtccccactgatagtcccacccctccagaga
atgggaaaggatgagcattagagccctggaggtcagggccatgtctgtgt
ttatcatcctcagaaaaccaaaacagaagaggtaaggaagtaacaaggac
aggtggagtctttccttctactgttatgttccctacagggtgtgctgatg
gttggcccacctggcactggaaagacccttctagctaaagcagttgccac
ggaatgcaagacaacgttcttcaatgtctcttcatcaactctgacgtcca
aatacagaggagagtctgagaagcttgtccgtcttctgtttgaaatggta
atgtttgaaacagctctaatagacattttttacctctgtctgactctcca
ttacataggtagggtgacactcttcataggacctgattctgtctttgaca
tgtcctttatgagcatgagtactttggcttctgttatctcttcttcagag
tgcagcacatctgcttttctgagcattactaggtgctgtaggtctaagta
ttatggctatgcttcttagaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_7471854_7472944
seq2: B6Ng01-020N12.g_69_1141

seq1  GAATTCTTTTGACAAATTCAGCAATATTTTTATCTCATAATGGATGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGACAAATTCAGCAATATTTTTATCTCATAATGGATGGTTT  50

seq1  TGAAGATCCTAGGATGGTATGAAAGGAGCTATTTAAGACAATCTGGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCCTAGGATGGTATGAAAGGAGCTATTTAAGACAATCTGGGTGA  100

seq1  AGAGTAGACATCTGCCTCTTCAAAATACCAATTACTAGTAGTTAATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGACATCTGCCTCTTCAAAATACCAATTACTAGTAGTTAATCTTT  150

seq1  TGATAAAGATTAATAAATTAACAGTCAGTTTTCCTTTTTTGTTAATTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGATTAATAAATTAACAGTCAGTTTTCCTTTTTTGTTAATTGAG  200

seq1  TTCCAAACCTTTAATGTGATTCTCTTCCTTTTGTGTAATAGAAAAGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACCTTTAATGTGATTCTCTTCCTTTTGTGTAATAGAAAAGTTAT  250

seq1  TTGTGTCAGTTGTGATGGCATAGACCCAACATTTGGGAGGCAGAGATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCAGTTGTGATGGCATAGACCCAACATTTGGGAGGCAGAGATAGG  300

seq1  TGGAGCTCTGTGAGTTTGAGGCCAACCTGGTCTACATATGAGTTCCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCTGTGAGTTTGAGGCCAACCTGGTCTACATATGAGTTCCAGGA  350

seq1  CAGCTGGGGCTAAATTAGTGAGGCTCTATTTAAAATAAACAAACGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGGCTAAATTAGTGAGGCTCTATTTAAAATAAACAAACGAACAA  400

seq1  ACAAACTTTGTTATGAAATATCATTCACTTTACTCTTTGATCTTTGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTTGTTATGAAATATCATTCACTTTACTCTTTGATCTTTGTCAC  450

seq1  AGTGTTGTATATAAATGTAGTGCAATTTGGTACTTAGTGCTATTCCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTATATAAATGTAGTGCAATTTGGTACTTAGTGCTATTCCTAGG  500

seq1  CAAGCTACTGTACAAGGGCGTCCCCACTGATAGTCCCACCCCTCCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTACTGTACAAGGGCGTCCCCACTGATAGTCCCACCCCTCCAGAGA  550

seq1  ATGGGAAAGGATGAGCATTAGAGCCCTGGAGGTCAGGGCCATGTCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAGGATGAGCATTAGAGCCCTGGAGGTCAGGGCCATGTCTGTGT  600

seq1  TTATCATCCTCAGAAAACCAAAACAGAAGAGGTAAGGAAGTAACAAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCCTCAGAAAACCAAAACAGAAGAGGTAAGGAAGTAACAAGGAC  650

seq1  AGGTGGAGTCTTTCCTTCTACTGTTATGTTCCCTACAGGGTGTGCTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGTCTTTCCTTCTACTGTTATGTTCCCTACAGGGTGTGCTGATG  700

seq1  GTTGGCCCACCTGGCACTGGAAAGACCCTTCTAGCTAAAGCAGTTGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCCACCTGGCACTGGAAAGACCCTTCTAGCTAAAGCAGTTGCCAC  750

seq1  GGAATGCAAGACAACGTTCTTCAATGTCTCTTCATCAACTCTGACGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCAAGACAACGTTCTTCAATGTCTCTTCATCAACTCTGACGTCCA  800

seq1  AATACAGAGGAGAGTCTGAGAAGCTTGTCCGTCTTCTGTTTGAAATGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAGGAGAGTCTGAGAAGCTTGTCCGTCTTCTGTTTGAAATGGTA  850

seq1  ATGTTTGAAACAGCTCTAATAGACATTTTTTACCTCTGTCTGACTCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAAACAGCTCTAATAGACATTTTTTACCTCTGTCTGACTCTCCA  900

seq1  TTACATAGGTAGGGTGACACTCTTCATAGGACCTGATTCTGTCTTTGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGGTAGGGTGACACTCTTCATAGGACCTGATTCTGTCTTTGACA  950

seq1  TGTCCTTTATGAGCATGAGTAACTTTGGCTTCTGTTTATCTCCTTTCCTC  1000
      |||||||||||||||||||| ||||||||||||| |||||||   | || 
seq2  TGTCCTTTATGAGCATGAGT-ACTTTGGCTTCTG-TTATCTC---TTCTT  995

seq1  CAGAGGTGCAGCCACATCTGCTATTTTCTGAGCATTACTAGTGTGCTGTA  1050
      |||| |||||| |||||||||  |||||||||||||||||| ||||||||
seq2  CAGA-GTGCAG-CACATCTGC--TTTTCTGAGCATTACTAG-GTGCTGTA  1040

seq1  AGAGTCTAAAGTAATTATGGCTAATTGGCTTCTTTAGAATT  1091
         |||| |||| ||||||||||    ||||| ||||||||
seq2  --GGTCT-AAGT-ATTATGGCTA---TGCTTC-TTAGAATT  1073