BAC Information

Click to search

BAC

Clone NameB6Ng01-021B04
Chromosome10 (Build37)
Map Location 23,433,781 - 23,574,475
singlet/doubletdoublet
Overlap geneRps12, 1110021L09Rik, Vnn3
Upstream geneTbpl1, Tcf21, Eya4
Downstream geneVnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021B04.bB6Ng01-021B04.g
ACCDH853683DH853684
length1,089114
definitionDH853683|Mus musculus domesticus DNA, BAC clone: B6Ng01-021B04, 5' end.DH853684|Mus musculus domesticus DNA, BAC clone: B6Ng01-021B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,433,781 - 23,434,885)(23,574,362 - 23,574,475)
sequence
gaattcctatgactctccagagaataaggaattgaatattttcaaaattt
tacatgaaaactcatttgaccacagagtgataggctctgatgtgcttatc
agagcacagctgacactgatagacctaatctaggaggatagtccaacatg
ctgtcctttaccaaatatttaaaacttctttgttgaaactaaaaaaaaaa
aaaccaaaaaaaaaaaattttttttaatctataggataggttaaggcaac
agtttcctgacacagagaatacagttattctattagagcaccacacctca
gtagtcaaagtaacatttggtctaatcagcatgagacaaaaaacaatgtc
tagctgattaaatctttaggatcacttaaaagaagtgtctacctggggcc
tggagagagggctcagtagttaaaagcactggacggtcttccagagggcc
aggattcaattcccaacacccacataacagctcacaactgtcccagagga
tctgataccctccctagacatatatacatgtaaaacagcaatccacatgt
gatggtttgtatattcttggaccagggagtggcaccatttggaggtgtgg
ccttgttagaatacgtgtgacccgattggagtaggtgtgtcactgtgggt
gtgggcttaagactctcaccccagttgcctggaagtcagtcttccactag
cagcctttggatgaagacatggaattctcaactctgcctgtgccatgcct
gcctggatactgccatgctcccaccttgatgataatagactgaacctctg
aacctgtaagccagccccaagtaaatgttgttttttataagacttgcctt
ggtcatggtgtctgttcacagcagtaaaaccctaactaagacaccacata
aaataaataaatagatcttttaaaaaaaaaatagtatctatcaggtagaa
gttgcttttctagaaacttgcacaagactaaacttcatcttacaacaatt
tcacttgctccttgtaccacttatttctggcactgggagctagaacagaa
tggaagctcactgattctcataaatcattcatcaatgag
aacaaaatcacaatgaatagctaacatatctacgggtttctgtaattatg
agaagacaagcaggacagagatggcatgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_23433781_23434885
seq2: B6Ng01-021B04.b_45_1133

seq1  GAATTCCTATGACTCTCCAGAGAATAAGGAATTGAATATTTTCAAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGACTCTCCAGAGAATAAGGAATTGAATATTTTCAAAATTT  50

seq1  TACATGAAAACTCATTTGACCACAGAGTGATAGGCTCTGATGTGCTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAAACTCATTTGACCACAGAGTGATAGGCTCTGATGTGCTTATC  100

seq1  AGAGCACAGCTGACACTGATAGACCTAATCTAGGAGGATAGTCCAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAGCTGACACTGATAGACCTAATCTAGGAGGATAGTCCAACATG  150

seq1  CTGTCCTTTACCAAATATTTAAAACTTCTTTGTTGAAACTAAAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTACCAAATATTTAAAACTTCTTTGTTGAAACTAAAAAAAAAA  200

seq1  AAACCAAAAAAAAAAAATTTTTTTTAATCTATAGGATAGGTTAAGGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAAAAAAAATTTTTTTTAATCTATAGGATAGGTTAAGGCAAC  250

seq1  AGTTTCCTGACACAGAGAATACAGTTATTCTATTAGAGCACCACACCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTGACACAGAGAATACAGTTATTCTATTAGAGCACCACACCTCA  300

seq1  GTAGTCAAAGTAACATTTGGTCTAATCAGCATGAGACAAAAAACAATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCAAAGTAACATTTGGTCTAATCAGCATGAGACAAAAAACAATGTC  350

seq1  TAGCTGATTAAATCTTTAGGATCACTTAAAAGAAGTGTCTACCTGGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATTAAATCTTTAGGATCACTTAAAAGAAGTGTCTACCTGGGGCC  400

seq1  TGGAGAGAGGGCTCAGTAGTTAAAAGCACTGGACGGTCTTCCAGAGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAGGGCTCAGTAGTTAAAAGCACTGGACGGTCTTCCAGAGGGCC  450

seq1  AGGATTCAATTCCCAACACCCACATAACAGCTCACAACTGTCCCAGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCAATTCCCAACACCCACATAACAGCTCACAACTGTCCCAGAGGA  500

seq1  TCTGATACCCTCCCTAGACATATATACATGTAAAACAGCAATCCACATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATACCCTCCCTAGACATATATACATGTAAAACAGCAATCCACATGT  550

seq1  GATGGTTTGTATATTCTTGGACCAGGGAGTGGCACCATTTGGAGGTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTGTATATTCTTGGACCAGGGAGTGGCACCATTTGGAGGTGTGG  600

seq1  CCTTGTTAGAATACGTGTGACCCGATTGGAGTAGGTGTGTCACTGTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTAGAATACGTGTGACCCGATTGGAGTAGGTGTGTCACTGTGGGT  650

seq1  GTGGGCTTAAGACTCTCACCCCAGTTGCCTGGAAGTCAGTCTTCCACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTTAAGACTCTCACCCCAGTTGCCTGGAAGTCAGTCTTCCACTAG  700

seq1  CAGCCTTTGGATGAAGACATGGAATTCTCAACTCTGCCTGTGCCATGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTGGATGAAGACATGGAATTCTCAACTCTGCCTGTGCCATGCCT  750

seq1  GCCTGGATACTGCCATGCTCCCACCTTGATGATAATAGACTGAACCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGATACTGCCATGCTCCCACCTTGATGATAATAGACTGAACCTCTG  800

seq1  AACCTGTAAGCCAGCCCCAAGTAAATGTTGTTTTTTATAAGACTTGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTAAGCCAGCCCCAAGTAAATGTTGTTTTTTATAAGACTTGCCTT  850

seq1  GGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGACACCACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGACACCACATA  900

seq1  AAATAAATAAATAGATCTTTTAAAAAAAAAAAATAGTATCTATCAGGTAG  950
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AAATAAATAAATAGATCTTTT--AAAAAAAAAATAGTATCTATCAGGTAG  948

seq1  AAAGTTGCTTTTCTTAGACACTTGCACAAAGACTAAACTTCAATCTTACA  1000
       |||||||||||| |||| |||||||| ||||||||||||| ||||||||
seq2  -AAGTTGCTTTTC-TAGAAACTTGCAC-AAGACTAAACTTC-ATCTTACA  994

seq1  AACCAAATTCACTTGCTCCCTTGTACACACTTATTTCTGGCCACTGGGAA  1050
      |  ||| |||||||||| |||||||| ||||||||||||| ||||||| |
seq2  A--CAATTTCACTTGCT-CCTTGTAC-CACTTATTTCTGG-CACTGGG-A  1038

seq1  GCTAGAACAGATATGAAAAGCTCACTGATTCTCATAAAATCATTCATCAG  1100
      ||||||||||| |||  |||||||||||||||||| ||||||||||||| 
seq2  GCTAGAACAGA-ATG-GAAGCTCACTGATTCTCAT-AAATCATTCATCA-  1084

seq1  ATGAG  1105
      |||||
seq2  ATGAG  1089

seq1: chr10_23574362_23574475
seq2: B6Ng01-021B04.g_75_188 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACATGCCATCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACATGCCATCTCTGT  50

seq1  CCTGCTTGTCTTCTCATAATTACAGAAACCCGTAGATATGTTAGCTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGTCTTCTCATAATTACAGAAACCCGTAGATATGTTAGCTATTC  100

seq1  ATTGTGATTTTGTT  114
      ||||||||||||||
seq2  ATTGTGATTTTGTT  114