BAC Information

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BAC

Clone NameB6Ng01-021B21
Chromosome10 (Build37)X (Build37)
Map Location 104,053,903 - 104,054,36343,183,661 - 43,184,733
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021B21.bB6Ng01-021B21.g
ACCDH853717DH853718
length9621,096
definitionDH853717|Mus musculus domesticus DNA, BAC clone: B6Ng01-021B21, 5' end.DH853718|Mus musculus domesticus DNA, BAC clone: B6Ng01-021B21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(43,183,661 - 43,184,733)
sequence
gaattctcacctgaggaatacggaatggctgagaaacagctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaataaatcaaccctgagact
tcatctcacaccagacagaatggctaagatcaaaaattcaggtgacaaca
gatgctggcaaggatgtggagaaagaggaacactcttccatttctggtag
gattgcaagcttgtacaaccactctggaaatcagtctgactgttcctcag
aaaattggacatggtactactgacagatcccgcaatacttctcctgggca
tatatccagaagatgttccaactagtaagaaatacacctgctctactatg
ttcatagcagccttatttataatagccagcagctggaaagatcccagatg
cccagcaacagaggaatggatacaaaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttataaaattcttaggcaaa
tggctggacttggagggcattatcctgagtgaggtaacccaatcagaaaa
gaactctaatgatatatactcactgataagtggatattaacccagaaact
tagaatacccaagatataagttacaatttgcaaaacacatgaaactcaag
aagagtctggcggttcctcagaaaattggacatagtactacgggaggatc
cagaaatacctctcctgggcatatatccagaagatgtcccaaccaataag
aaaggacacatgctccactatgttcatagcagccttatttataatagcca
gcagctggaaagaacccagatgcccctcaacagaggaatggatacagaaa
atgtggtacatctatcaatggagtactactcagctattaaaagaatgaat
tatgaaattcctagccaaatggatggacctggagggcatcatcctgagtg
agtaacacattc
gaattcaattggctgaaatttttatagactttttatgttattttagaaat
tattatactttagaaattatgaaattatatgggaaagaaaaaatgcaaat
agttacagaagggaactttagagaaaaaaatacatgcatttctttgtaca
gaataggagaagaaacaagatacagtataagaagtagaaataatgaagtg
tagtcttccatggagcacttaaccttaccctcatgtacattttatttaaa
actttatatgtctcaaattataacttttaaatagagatatgaaagggtag
gcataaatgtttgatatgtctaaaaaatcagcattctcttgcccaaccat
taatgcacttgtctttattacttggaggctgagagtaagctttacatgtt
ctaatttcacacacacacacacacacacacacacacacacacacacacac
taataaaatagagaatatccctcttatctcctaaatcaacttttatgaat
actgtagaaaaagcagaatcaatgtatctttaaaaacatggttaagtggt
ttaggcagaaataatgtgtgtagtacatttcaagtttgcttactaattaa
tcaagatatacatcataataaaaattcaacttaaattttgggttaaattg
attgtttcttgccaaagatcaaactttgataccacagggtaaaaacaagg
aaggtgctggtggggttcagtgttgagagcaactggtgaggattggaaga
gatagtgactggggtctgctgtctataatatcctgctatgagagcaggga
aagagtgggagtaggtaatcatacacatacttggtacacaaagagaatga
ctgaagaaaagataagttacagcaccttcacacatacaaatacttatgca
cccacacacaacacacacacacacacacacatagtttacttatatatacc
acatggacacatgttatacatatatacatctagttgatggggtggaagaa
aaaaattattcctacaagttaattcctttcctctaagacttataattacc
cagcaaaatctttccaaacagataaaaatttcaattggttacgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-021B21.b_43_512 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||| ||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTTTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||  ||||||||||| ||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGCTGGGCATCTGGGATCTTTCCAGCTGCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| ||||| ||||| ||||  |||||||  ||
seq2  ATAAATAAGGCTGCTATGAACATAGTAGAGCAGGTGTATTTCTTACTAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  |||||||||||||||||||||| ||| ||||||| |||||   | 
seq2  TGGAACATCTTCTGGATATATGCCCAGGAGAAGTATTGCGGGATCTGTCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||| |||||||||||||||| |||| | ||||| ||||||||||||
seq2  GTAGTACCATGTCCAATTTTCTGAGGAACAGTCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||| ||||  |||||| |||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCTACCAGAAATGGAAGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TCCACATCCTTGCCAGCATCTGTTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||| |||||||||| || | ||||||||||| ||| ||||||||||||
seq2  TTCTGTCTGGTGTGAGATGAAGTCTCAGGGTTGATTT-ATTTGCATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||||||||||||||||||||||| || ||||| ||||||| 
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGCTGTTTCTCAGCCATTCC  449

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  470

seq1: chrX_43183661_43184733
seq2: B6Ng01-021B21.g_66_1150 (reverse)

seq1  ATTGAAATTTTATACTGTTT-GAAAGATTTTGCTGGG-ATATATAAGTCA  48
      |||||||||||   |||||| |||||||||||||||| |  |||||||| 
seq2  ATTGAAATTTTTATCTGTTTGGAAAGATTTTGCTGGGTAATTATAAGTCT  50

seq1  TAGGAGAAA-GAATTAACTTGTAGGGAT-ATTTTTTTCTTCCA-CCCATC  95
      |||  |||| ||||||||||||||| || |||||||||||||| ||||||
seq2  TAGAGGAAAGGAATTAACTTGTAGGAATAATTTTTTTCTTCCACCCCATC  100

seq1  AACTAGATGTATATATGTAT-ACATGTGTACATGT-GTATATATAAGTAA  143
      |||||||||||||||||||| |||||||| ||||| ||||||||||||||
seq2  AACTAGATGTATATATGTATAACATGTGTCCATGTGGTATATATAAGTAA  150

seq1  A-TATGTGTGTGTGTGTGTGTGTGTGTGTGTGT-GGTGCATATGTATTTG  191
      | ||||||||||||||||||||||| ||||||| |||||||| |||||||
seq2  ACTATGTGTGTGTGTGTGTGTGTGT-TGTGTGTGGGTGCATAAGTATTTG  199

seq1  TATGTGTGAAGGTGCTGTAACTTATCTTTTCTTCAGTCATTCTCTTTGTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGAAGGTGCTGTAACTTATCTTTTCTTCAGTCATTCTCTTTGTG  249

seq1  TA-CAAGTATGTGTTTGATTACCTACTCCCACTCTTTCCCTGCTCTCATA  290
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACCAAGTATGTGTATGATTACCTACTCCCACTCTTTCCCTGCTCTCATA  299

seq1  GCAGGATATTATAGACAGCAGA-CCCAGTCACTATCTCTTCCAATCCTCA  339
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCAGGATATTATAGACAGCAGACCCCAGTCACTATCTCTTCCAATCCTCA  349

seq1  CCAGTTGCTCTCAACACTGAACCCCACCAGCACCTTCCTTG-TTTTACCC  388
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCAGTTGCTCTCAACACTGAACCCCACCAGCACCTTCCTTGTTTTTACCC  399

seq1  TGTGGTATCAAAG-TTGATCTTTGGCAAGAAACAATCAATTTAACCCAAA  437
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATCAAAGTTTGATCTTTGGCAAGAAACAATCAATTTAACCCAAA  449

seq1  ATTTAAGTTGAATTTTTATTATGATGTATATCTTGATTAATTAGTAAGCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTTGAATTTTTATTATGATGTATATCTTGATTAATTAGTAAGCA  499

seq1  AACTTGAAATGTACTACACACATTATTTCTGCCTAAACCACTTAACCATG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAATGTACTACACACATTATTTCTGCCTAAACCACTTAACCATG  549

seq1  TTTTTAAAGATACATTGATTCTGCTTTTTCTACAGTATTCATAAAAGTTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGATACATTGATTCTGCTTTTTCTACAGTATTCATAAAAGTTG  599

seq1  ATTTAGGAGATAAGAGGGATATTCTCTATTTTATTAGTGTGTGTGTGTGT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGAGATAAGAGGGATATTCTCTATTTTATTAGTGTGTGTGTGTGT  649

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATTAGAACATGTAAAGCTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATTAGAACATGTAAAGCTT  699

seq1  ACTCTCAGCCTCCAAGTAATAAAGACAAGTGCATTAATGGTTGGGCAAGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGCCTCCAAGTAATAAAGACAAGTGCATTAATGGTTGGGCAAGA  749

seq1  GAATGCTGATTTTTTAGACATATCAAACATTTATGCCTACCCTTTCATAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGATTTTTTAGACATATCAAACATTTATGCCTACCCTTTCATAT  799

seq1  CTCTATTTAAAAGTTATAATTTGAGACATATAAAGTTTTAAATAAAATGT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTAAAAGTTATAATTTGAGACATATAAAGTTTTAAATAAAATGT  849

seq1  ACATGAGGGTAAGGTTAAGTGCTCCATGGAAGACTACACTTCATTATTTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGGTAAGGTTAAGTGCTCCATGGAAGACTACACTTCATTATTTC  899

seq1  TACTTCTTATACTGTATCTTGTTTCTTCTCCTATTCTGTACAAAGAAATG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTATACTGTATCTTGTTTCTTCTCCTATTCTGTACAAAGAAATG  949

seq1  CATGTATTTTTTTCTCTAAAGTTCCCTTCTGTAACTATTTGCATTTTTTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTTTTTTCTCTAAAGTTCCCTTCTGTAACTATTTGCATTTTTTC  999

seq1  TTTCCCATATAATTTCATAATTTCTAAAGTATAATAATTTCTAAAATAAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATATAATTTCATAATTTCTAAAGTATAATAATTTCTAAAATAAC  1049

seq1  ATAAAAAGTCTATAAAAATTTCAGCCAATTGAATTC  1073
      ||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGTCTATAAAAATTTCAGCCAATTGAATTC  1085