BAC Information

Click to search

BAC

Clone NameB6Ng01-021K14
Chromosome10 (Build37)
Map Location 88,005,453 - 88,160,394
singlet/doubletdoublet
Overlap gene8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic
Upstream genePah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1
Downstream geneEG237433, Arl1, Utp20, Slc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021K14.bB6Ng01-021K14.g
ACCDH854101DH854102
length1,049240
definitionDH854101|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K14, 5' end.DH854102|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,005,453 - 88,006,518)(88,160,155 - 88,160,394)
sequence
gaattctgtaaaatacaggtgaaataataggagtagagaaaaataaagct
gtactagtaaaggaagaaaaatgagtcagaggcatgcagctcctagcatc
ttagttactgtcgttgagcaatcaagagccaagagcccagaaggttgcag
caatagaaataagaagagaaaaaaaaagattagttttgtgtgttttattt
ctatctataggaaaaaaaaatcatttctccatataggaagcaaagtctcc
taagaatttaatgattaaaaactcctttatcgcacaacttgtggtggttt
ggagaacggctcccattagctcatatgtttgaatgcttagttagtagaac
tgtttgggaaggattaggaggtgtggcctcatttgaggagctgaatcact
aggagtaggctttgaagtttcaaaagcttatatcaggcccaactcctggc
ctgctggctgcagatcaggattatctgcttcctaatatgatgatcatgga
caaaccctctaaaattgtaagcaagcccccaattaaatgctcgcttttat
aagagttgtcttggtcatggtgtctcttcagagcaatagaacagtaacta
acacacaaccctatgtatggtagttactgaccagatcaatgggagttaga
ctaggagctttctcagaattggttgttgagtgaaaagagaaagcaagtga
gaaaaagagactctcaggggacatgccatggagctgttcaaatcccaagg
aatcacagaacatcacaatagatatctcgatttcaacagctatttgaagt
catagtatattaagcaccacctcttcctcttcttccttggcagtactaag
agttgagtccagagcctcctgtatgctatgccagactctaccaactcaca
gacttttttccctagattcaatttccagaatgtatctgttctatatgctt
taggattgccacgcactgcagtacctgggttgatcagtatgtgattacct
aagatggagacctccatcatagcaggagctcccagtcatgatgcaccag
aaaggttattttggaaggggttttgtctcactgtcacaagtcttttacct
atatgttctggtttccaattttgcatttttatgggatttctgctttctct
ctgtgtgaatgtatgtgtcagtgcctatattgtttcttatgcttcttctt
tggctcttttctttttttttctcccatttgtttgtttgttgctattctag
tgtggatttggttgggtaaggaggagctggggggaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88005453_88006518
seq2: B6Ng01-021K14.b_47_1095

seq1  GAATTCTGTAAAATACAGGTGAAATAATAGGAGTAGAGAAAAATAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAAATACAGGTGAAATAATAGGAGTAGAGAAAAATAAAGCT  50

seq1  GTACTAGTAAAGGAAGAAAAATGAGTCAGAGGCATGCAGCTCCTAGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGTAAAGGAAGAAAAATGAGTCAGAGGCATGCAGCTCCTAGCATC  100

seq1  TTAGTTACTGTCGTTGAGCAATCAAGAGCCAAGAGCCCAGAAGGTTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACTGTCGTTGAGCAATCAAGAGCCAAGAGCCCAGAAGGTTGCAG  150

seq1  CAATAGAAATAAGAAGAGAAAAAAAAAGATTAGTTTTGTGTGTTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAAATAAGAAGAGAAAAAAAAAGATTAGTTTTGTGTGTTTTATTT  200

seq1  CTATCTATAGGAAAAAAAAATCATTTCTCCATATAGGAAGCAAAGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATAGGAAAAAAAAATCATTTCTCCATATAGGAAGCAAAGTCTCC  250

seq1  TAAGAATTTAATGATTAAAAACTCCTTTATCGCACAACTTGTGGTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTTAATGATTAAAAACTCCTTTATCGCACAACTTGTGGTGGTTT  300

seq1  GGAGAACGGCTCCCATTAGCTCATATGTTTGAATGCTTAGTTAGTAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACGGCTCCCATTAGCTCATATGTTTGAATGCTTAGTTAGTAGAAC  350

seq1  TGTTTGGGAAGGATTAGGAGGTGTGGCCTCATTTGAGGAGCTGAATCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGAAGGATTAGGAGGTGTGGCCTCATTTGAGGAGCTGAATCACT  400

seq1  AGGAGTAGGCTTTGAAGTTTCAAAAGCTTATATCAGGCCCAACTCCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGGCTTTGAAGTTTCAAAAGCTTATATCAGGCCCAACTCCTGGC  450

seq1  CTGCTGGCTGCAGATCAGGATTATCTGCTTCCTAATATGATGATCATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCTGCAGATCAGGATTATCTGCTTCCTAATATGATGATCATGGA  500

seq1  CAAACCCTCTAAAATTGTAAGCAAGCCCCCAATTAAATGCTCGCTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTCTAAAATTGTAAGCAAGCCCCCAATTAAATGCTCGCTTTTAT  550

seq1  AAGAGTTGTCTTGGTCATGGTGTCTCTTCAGAGCAATAGAACAGTAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGTCTTGGTCATGGTGTCTCTTCAGAGCAATAGAACAGTAACTA  600

seq1  ACACACAACCCTATGTATGGTAGTTACTGACCAGATCAATGGGAGTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAACCCTATGTATGGTAGTTACTGACCAGATCAATGGGAGTTAGA  650

seq1  CTAGGAGCTTTCTCAGAATTGGTTGTTGAGTGAAAAGAGAAAGCAAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGCTTTCTCAGAATTGGTTGTTGAGTGAAAAGAGAAAGCAAGTGA  700

seq1  GAAAAAGAGACTCTCAGGGGACATGCCATGGAGCTGTTCAAATCCCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGACTCTCAGGGGACATGCCATGGAGCTGTTCAAATCCCAAGG  750

seq1  AATCACAGAACATCACAATAGATATCTCGATTTCAACAGCTATTTGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGAACATCACAATAGATATCTCGATTTCAACAGCTATTTGAAGT  800

seq1  CATAGTATATTAAGCACCACCTCTTCCTCTTCTTCCTTGGCAGTACTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTATATTAAGCACCACCTCTTCCTCTTCTTCCTTGGCAGTACTAAG  850

seq1  AGTTGAGTCCAGAGCCTCCTGTATGCTATGCCAAGACTCTACCAACTCAA  900
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  AGTTGAGTCCAGAGCCTCCTGTATGCTATGCC-AGACTCTACCAACTC-A  898

seq1  CAGACTTTTTTTCCCTAGATTCAATTTCCAGAATGTATTCTGTTCTAATA  950
      ||||| ||||||||||||||||||||||||||||||| |||||||| |||
seq2  CAGAC-TTTTTTCCCTAGATTCAATTTCCAGAATGTA-TCTGTTCT-ATA  945

seq1  TGCTTTAAGGGATTGCCAACGGCACTGGCAGTAACCTGGGTTGATCAGTA  1000
      |||||||  |||||||||   ||||| ||||| |||||||||||||||||
seq2  TGCTTTA--GGATTGCCA--CGCACT-GCAGT-ACCTGGGTTGATCAGTA  989

seq1  TGTGATTTACCTAAGATTGGAGACCCTCCATCATAGGCAGGAGGCTCCCA  1050
      ||||| |||||||||| |||||| ||||||||||| |||||| |||||||
seq2  TGTGA-TTACCTAAGA-TGGAGA-CCTCCATCATA-GCAGGA-GCTCCCA  1034

seq1  GTTCATGATGCACCAG  1066
      | ||||||||||||||
seq2  G-TCATGATGCACCAG  1049

seq1: chr10_88160155_88160394
seq2: B6Ng01-021K14.g_74_313 (reverse)

seq1  TCTCCTCCCCCCAGCTCCTCCTTACCCAACCAAATCCACACTAGAATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCCCCCAGCTCCTCCTTACCCAACCAAATCCACACTAGAATAGC  50

seq1  AACAAACAAACAAATGGGAGAAAAAAAAAGAAAAGAGCCAAAGAAGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAATGGGAGAAAAAAAAAGAAAAGAGCCAAAGAAGAAGC  100

seq1  ATAAGAAACAATATAGGCACTGACACATACATTCACACAGAGAGAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAACAATATAGGCACTGACACATACATTCACACAGAGAGAAAGCA  150

seq1  GAAATCCCATAAAAATGCAAAATTGGAAACCAGAACATATAGGTAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCCATAAAAATGCAAAATTGGAAACCAGAACATATAGGTAAAAGA  200

seq1  CTTGTGACAGTGAGACAAAACCCCTTCCAAAATAACCTTT  240
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACAGTGAGACAAAACCCCTTCCAAAATAACCTTT  240