BAC Information

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BAC

Clone NameB6Ng01-022A11
Chromosome10 (Build37)
Map Location 88,421,105 - 88,422,179
singlet/doubletsinglet
Overlap geneTmem16d
Upstream geneTyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022A11.bB6Ng01-022A11.g
ACCDH854371DH854372
length1,074985
definitionDH854371|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A11, 5' end.DH854372|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaacactgccttttctatgaggaatgtatatatgtattttacac
atatgtgtatgtatttctcttgcaattgaagaccttaaagaaagatgaga
atggtatttcagaaaaaaataaaaacattaagcaaaatgatcacaattta
aatgaatgaagatataaaccccattagtattagtcattgtgaaaggtact
tttatttcattatgtagcacagccagacttatgaaacaggaagcaaaagc
tgaaaagtgttctatactttatttttatttttccatttatttatttattc
attcattttacgtcccaatcactgcccctctcctggtctcccccctcaca
ctatccttctcccttggctcagccattaaagggtcacaatctttgggctc
acaaccaaaactaaacttttatatttttaaataacaaaaaggttttagaa
gtaagccttttttttttcttttcttttctttttagataggttggcctcga
actcaaggtgtaaccaaagatgccttgaacatctgactctcctgcctcta
ccttcagagtgctggcattcaggtctatgtcaccctacctagtttttgtg
ttgctggagatggaacccagggtttcatttatgcacaagtactccaacac
ctgtcctatatctcagtctagtaaatggcttttaagttaaaagaatactt
accatttaacaaataaaaataccagttccaggcaggaattaccctttatt
gagctaatgcccagtgaggtcccatagattacaggctactatcaatgctc
tcagttaccctccgggaactttacagtaagaccctattgctaatggcacc
aaatatttgagtcattgaacatggattcagcaagctggtactgacttcat
cccaacagtgctgagagtgctctgtacactgctggaagagtgaactgatg
attactcttatccagctggtgaactctttgggctacaataaaatctgact
ggtaggacatgttcactggtaccatatgaattaaagtcacgggaggtacc
agccacttctctgaatggaattaa
gaattcatagtcagtgcacacagattctgcaaaaatgcaatccaattagc
accacatgctggaggtgtgtgacaagtaagagccctgtcacagaaaacct
ctgaggcaatggcttcttccttgaatgaactacgaggcaatcaaatgaaa
tgaaaccaagagccaagggaaaggccaccagctcactgtaggaaacctac
tttgggagactggctaaggacatcaatgaccttagacaagtgaatgactt
taatgggaaatgttgaaaagtagactatttttaaaaaaaaaaatgatgat
aaaacatcttagttcattttcaaagtaaaaattgatataaacattttaag
ttagagttcaaactgttgagttttgtatatgtcattatgttttgttctcc
tgtttgctgtggcttaccttgtttgagcatcatagcaacactgccttcat
ttggtaagcttcatagtgtgccttcctttcttgttgtgaaacaattggat
aagaactactgttcatagctcctttatcaagctacaggatttagcagtaa
atttgtctagaacttggattttttttttgtggatggtctttttgatactg
ctataatcacattgcttaatgtagatgtgtttatagcttcttgatttaat
tttggtcatattcctgtgtatctagcaattttatccattccttttagatt
tttcaattttcaaatttaagctttcaaagtatttcctaatgattcttcga
acttctttggactcttttataacactaattttccatccataacttttatt
aattttgttttctgtgttctttcttttggctgagggtttatcaattttat
atatccttttaatggactaaattttgtttggttgattctatgtatgatta
tttagggttccatttcattgaataattgctaaccactattggggattgat
tggtgtgggttcccaaaacttggggtcatcattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88421105_88422179
seq2: B6Ng01-022A11.b_46_1119

seq1  GAATTCTAACACTGCCTTTTCTATGAGGAATGTATATATGTATTTTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACACTGCCTTTTCTATGAGGAATGTATATATGTATTTTACAC  50

seq1  ATATGTGTATGTATTTCTCTTGCAATTGAAGACCTTAAAGAAAGATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTATGTATTTCTCTTGCAATTGAAGACCTTAAAGAAAGATGAGA  100

seq1  ATGGTATTTCAGAAAAAAATAAAAACATTAAGCAAAATGATCACAATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTTCAGAAAAAAATAAAAACATTAAGCAAAATGATCACAATTTA  150

seq1  AATGAATGAAGATATAAACCCCATTAGTATTAGTCATTGTGAAAGGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAAGATATAAACCCCATTAGTATTAGTCATTGTGAAAGGTACT  200

seq1  TTTATTTCATTATGTAGCACAGCCAGACTTATGAAACAGGAAGCAAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCATTATGTAGCACAGCCAGACTTATGAAACAGGAAGCAAAAGC  250

seq1  TGAAAAGTGTTCTATACTTTATTTTTATTTTTCCATTTATTTATTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTGTTCTATACTTTATTTTTATTTTTCCATTTATTTATTTATTC  300

seq1  ATTCATTTTACGTCCCAATCACTGCCCCTCTCCTGGTCTCCCCCCTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTACGTCCCAATCACTGCCCCTCTCCTGGTCTCCCCCCTCACA  350

seq1  CTATCCTTCTCCCTTGGCTCAGCCATTAAAGGGTCACAATCTTTGGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTCTCCCTTGGCTCAGCCATTAAAGGGTCACAATCTTTGGGCTC  400

seq1  ACAACCAAAACTAAACTTTTATATTTTTAAATAACAAAAAGGTTTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAAAACTAAACTTTTATATTTTTAAATAACAAAAAGGTTTTAGAA  450

seq1  GTAAGCCTTTTTTTTTTCTTTTCTTTTCTTTTTAGATAGGTTGGCCTCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCTTTTTTTTTTCTTTTCTTTTCTTTTTAGATAGGTTGGCCTCGA  500

seq1  ACTCAAGGTGTAACCAAAGATGCCTTGAACATCTGACTCTCCTGCCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGTGTAACCAAAGATGCCTTGAACATCTGACTCTCCTGCCTCTA  550

seq1  CCTTCAGAGTGCTGGCATTCAGGTCTATGTCACCCTACCTAGTTTTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAGTGCTGGCATTCAGGTCTATGTCACCCTACCTAGTTTTTGTG  600

seq1  TTGCTGGAGATGGAACCCAGGGTTTCATTTATGCACAAGTACTCCAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAGATGGAACCCAGGGTTTCATTTATGCACAAGTACTCCAACAC  650

seq1  CTGTCCTATATCTCAGTCTAGTAAATGGCTTTTAAGTTAAAAGAATACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTATATCTCAGTCTAGTAAATGGCTTTTAAGTTAAAAGAATACTT  700

seq1  ACCATTTAACAAATAAAAATACCAGTTCCAGGCAGGAATTACCCTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTAACAAATAAAAATACCAGTTCCAGGCAGGAATTACCCTTTATT  750

seq1  GAGCTAATGCCCAGTGAGGTCCCATAGATTACAGGCTACTATCAATGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATGCCCAGTGAGGTCCCATAGATTACAGGCTACTATCAATGCTC  800

seq1  TCAGTTACCCTCCGGGAACTTTACAGTAAGACCCTATTGCTAATGGCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTACCCTCCGGGAACTTTACAGTAAGACCCTATTGCTAATGGCACC  850

seq1  AAATATTTGAGTCATTGAACATGGATTCAGCAAGCTGGTACTGACTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGAGTCATTGAACATGGATTCAGCAAGCTGGTACTGACTTCAT  900

seq1  CCCAACAGTGCTGAGAGGTGCTCTGTACACTGCTGGAAGAGTGAACTGAT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCAACAGTGCTGAGA-GTGCTCTGTACACTGCTGGAAGAGTGAACTGAT  949

seq1  GATTACTCTTATCCAGCT-GTGAACTCTTTGGGCTACAATAATATCTGAC  999
      |||||||||||||||||| ||||||||||||||||||||||| |||||| 
seq2  GATTACTCTTATCCAGCTGGTGAACTCTTTGGGCTACAATAAAATCTGA-  998

seq1  CTGGTAAGACATGTTCACTGGTACAATAATGATATAAAGTCACGGGAGTA  1049
      |||||| ||||||||||||||||| || ||||  ||||||||||||||  
seq2  CTGGTAGGACATGTTCACTGGTACCAT-ATGAATTAAAGTCACGGGAGGT  1047

seq1  ACCAGCCACTT-TCTGATTGGAATTAA  1075
      ||||||||||| ||||| |||||||||
seq2  ACCAGCCACTTCTCTGAATGGAATTAA  1074