BAC Information

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BAC

Clone NameB6Ng01-022H24
Chromosome10 (Build37)
Map Location 53,610,083 - 53,719,193
singlet/doubletdoublet
Overlap geneMan1a
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
Downstream geneLOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022H24.bB6Ng01-022H24.g
ACCDH854693DH854694
length1,070958
definitionDH854693|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H24, 5' end.DH854694|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,718,118 - 53,719,193)(53,610,083 - 53,611,044)
sequence
gaattcatttcatatctgcgtaacaaatcagtgacccgggattagctcct
gctctcaagctcatggccctgagcacagattgtgaccaaagtcagggtta
actgtggttgttgccacagattttctttacttactcaacatctaaacctt
ataaaaaaaataagacagcagaaatctaaagccaatgaaacccaatttat
catcaacaaagaacaacttagctatgaaaactaaactatggtataatcaa
aacacttagtagcatacctttttatttacgttgcatacgaaattacttgt
tcatgatacttaagcctgttttaaaatatgtagaattctcttgaattgtt
caccagtctgggaacattctcgtcttccttcactgtgtttttatccttcg
cctacttcttcactacagtaaagtacttttattgtccagtaagtatatgt
agccaaaagcttacaaaatgtaattgtgatttaattatggaaatgtgatt
tcaatatgcaaacttgatttcagtactgcagctgcctccttactctgaac
taggattaactgcaattgaaaatgtcaataaaatttatacctatactatg
aaaatggaagtatacattcaaccttttctttataagtctggcatattgag
gatgaaagtaatactgagcactaaatgatagggatgtatctacacgttag
aatgatctcaatgtatgtgttgtattttctgagaaaagaatataaggggc
aaaagaagtacctctgcatttcaaatgaaaataaaatagtttacctttaa
cgacaaacataaatacaataaaagtggaatgcttttatgtaattagagag
tcccagaaagcatttagaaatagcttataaatctgccatatgttaacagc
actttaataaatatctcttggctgtgaataaaatttggagtccagttact
atttgcattttacattattttcactaggaaatgtgaggaaggaaacctca
tattgttgccattttataaagtatttgtccaaaacctgaccagaggttcc
cccagttaaatacttaagag
gaattctttgtcccattaccagggtggattataggaaggttgcagtcagt
ttatagaagacatttgttatttaccttactgacattgtcctttaagtcct
ccacccggtacagcttgtggagatcattgtcatgatggtcaagcatctaa
taagcaagctagactccagtggagtagagggtgtctgaggagtgtttgca
acagtgtgaagtccatgatcaattacaacagggtattacagcttgaaatc
ctggaagtcttttctatgacagctgatatgcttggaaaacacaaagagat
ggaaaactgccctatttttggttgagttaatgaatgtttcctccaatggc
agattataatcaggtatcttatagttaaggtaaacataagttactcaatg
ttatggcctgaaatagtgtattggtagacccttgcaagagctgtatccta
ttgtagggagagtttagatgaagattatatttgtgttttggacaaaagat
tgggagtttcttatttatttcttaacaattttctcactctttaaatcaca
tggggcctcctgcttgaaggacaagtgggcattactgagtcagaaataaa
tacagtagtgcctgcctggacggatgggtggtaagtcccaagtcctaaat
atagatgagctggaccatgcaagactacattatacaactgagaatggttt
aaacttataaggaaggcccagcaggctacctgagattctttccccattcc
ctctcatttcagttactccaaagctctgtgacttactgttcaccatggac
tctctccttctgggccctctacctctctctgggactcagtagattgcagt
ttgttctccagcagtgatctttcaagttcccatggggcatagatggagat
agagataagcatccagagatctttttttgaacacccccaaagttgcggct
actttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53718118_53719193
seq2: B6Ng01-022H24.b_44_1113 (reverse)

seq1  CTCTTAAGTATTTAAACTGAGGAGACATCTGGTCAGTTTTTGGACAATTA  50
      ||||||||||||| ||||| ||  || ||||||||| |||||||||| ||
seq2  CTCTTAAGTATTT-AACTGGGGGAACCTCTGGTCAGGTTTTGGACAAATA  49

seq1  CTTTTATAAAATGGCAACAAATATGAGTTTTCCTTTCTCACATTTTCTAA  100
      | |||||||||||||||| |||||||| ||||||| ||||||||| || |
seq2  C-TTTATAAAATGGCAAC-AATATGAGGTTTCCTTCCTCACATTTCCT-A  96

seq1  GTGAAAATAATGTAAAATGCAAATAGGTAACTGGACTCCAAATTTTTATT  150
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GTGAAAATAATGTAAAATGCAAATA-GTAACTGGACTCCAAA-TTTTATT  144

seq1  CACAGCCAAGAGATATTTATTAAAGTGCTGTTAACATATGGCAGATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAAGAGATATTTATTAAAGTGCTGTTAACATATGGCAGATTTAT  194

seq1  AAGCTATTTCTAAATGCTTTCTGGGACTCTCTAATTACATAAAAGCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTCTAAATGCTTTCTGGGACTCTCTAATTACATAAAAGCATTC  244

seq1  CACTTTTATTGTATTTATGTTTGTCGTTAAAGGTAAACTATTTTATTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTATTGTATTTATGTTTGTCGTTAAAGGTAAACTATTTTATTTTC  294

seq1  ATTTGAAATGCAGAGGTACTTCTTTTGCCCCTTATATTCTTTTCTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATGCAGAGGTACTTCTTTTGCCCCTTATATTCTTTTCTCAGAA  344

seq1  AATACAACACATACATTGAGATCATTCTAACGTGTAGATACATCCCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACACATACATTGAGATCATTCTAACGTGTAGATACATCCCTATC  394

seq1  ATTTAGTGCTCAGTATTACTTTCATCCTCAATATGCCAGACTTATAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGCTCAGTATTACTTTCATCCTCAATATGCCAGACTTATAAAGA  444

seq1  AAAGGTTGAATGTATACTTCCATTTTCATAGTATAGGTATAAATTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGAATGTATACTTCCATTTTCATAGTATAGGTATAAATTTTATT  494

seq1  GACATTTTCAATTGCAGTTAATCCTAGTTCAGAGTAAGGAGGCAGCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTCAATTGCAGTTAATCCTAGTTCAGAGTAAGGAGGCAGCTGCA  544

seq1  GTACTGAAATCAAGTTTGCATATTGAAATCACATTTCCATAATTAAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAATCAAGTTTGCATATTGAAATCACATTTCCATAATTAAATCA  594

seq1  CAATTACATTTTGTAAGCTTTTGGCTACATATACTTACTGGACAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACATTTTGTAAGCTTTTGGCTACATATACTTACTGGACAATAAAA  644

seq1  GTACTTTACTGTAGTGAAGAAGTAGGCGAAGGATAAAAACACAGTGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTACTGTAGTGAAGAAGTAGGCGAAGGATAAAAACACAGTGAAGG  694

seq1  AAGACGAGAATGTTCCCAGACTGGTGAACAATTCAAGAGAATTCTACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGAGAATGTTCCCAGACTGGTGAACAATTCAAGAGAATTCTACATA  744

seq1  TTTTAAAACAGGCTTAAGTATCATGAACAAGTAATTTCGTATGCAACGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACAGGCTTAAGTATCATGAACAAGTAATTTCGTATGCAACGTA  794

seq1  AATAAAAAGGTATGCTACTAAGTGTTTTGATTATACCATAGTTTAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGGTATGCTACTAAGTGTTTTGATTATACCATAGTTTAGTTTT  844

seq1  CATAGCTAAGTTGTTCTTTGTTGATGATAAATTGGGTTTCATTGGCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTAAGTTGTTCTTTGTTGATGATAAATTGGGTTTCATTGGCTTTA  894

seq1  GATTTCTGCTGTCTTATTTTTTTTATAAGGTTTAGATGTTGAGTAAGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGCTGTCTTATTTTTTTTATAAGGTTTAGATGTTGAGTAAGTAA  944

seq1  AGAAAATCTGTGGCAACAACCACAGTTAACCCTGACTTTGGTCACAATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCTGTGGCAACAACCACAGTTAACCCTGACTTTGGTCACAATCT  994

seq1  GTGCTCAGGGCCATGAGCTTGAGAGCAGGAGCTAATCCCGGGTCACTGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGGGCCATGAGCTTGAGAGCAGGAGCTAATCCCGGGTCACTGAT  1044

seq1  TTGTTACGCAGATATGAAATGAATTC  1076
      ||||||||||||||||||||||||||
seq2  TTGTTACGCAGATATGAAATGAATTC  1070

seq1: chr10_53610083_53611044
seq2: B6Ng01-022H24.g_68_1025

seq1  GAATTCTTTGTCCCATTACCAGGGTGGATTATAGGAAGGTTGCAGTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCCCATTACCAGGGTGGATTATAGGAAGGTTGCAGTCAGT  50

seq1  TTATAGAAGACATTTGTTATTTACCTTACTGACATTGTCCTTTAAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAGACATTTGTTATTTACCTTACTGACATTGTCCTTTAAGTCCT  100

seq1  CCACCCGGTACAGCTTGTGGAGATCATTGTCATGATGGTCAAGCATCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCGGTACAGCTTGTGGAGATCATTGTCATGATGGTCAAGCATCTAA  150

seq1  TAAGCAAGCTAGACTCCAGTGGAGTAGAGGGTGTCTGAGGAGTGTTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGCTAGACTCCAGTGGAGTAGAGGGTGTCTGAGGAGTGTTTGCA  200

seq1  ACAGTGTGAAGTCCATGATCAATTACAACAGGGTATTACAGCTTGAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGAAGTCCATGATCAATTACAACAGGGTATTACAGCTTGAAATC  250

seq1  CTGGAAGTCTTTTCTATGACAGCTGATATGCTTGGAAAACACAAAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTCTTTTCTATGACAGCTGATATGCTTGGAAAACACAAAGAGAT  300

seq1  GGAAAACTGCCCTATTTTTGGTTGAGTTAATGAATGTTTCCTCCAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTGCCCTATTTTTGGTTGAGTTAATGAATGTTTCCTCCAATGGC  350

seq1  AGATTATAATCAGGTATCTTATAGTTAAGGTAAACATAAGTTACTCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAATCAGGTATCTTATAGTTAAGGTAAACATAAGTTACTCAATG  400

seq1  TTATGGCCTGAAATAGTGTATTGGTAGACCCTTGCAAGAGCTGTATCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCCTGAAATAGTGTATTGGTAGACCCTTGCAAGAGCTGTATCCTA  450

seq1  TTGTAGGGAGAGTTTAGATGAAGATTATATTTGTGTTTTGGACAAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGGAGAGTTTAGATGAAGATTATATTTGTGTTTTGGACAAAAGAT  500

seq1  TGGGAGTTTCTTATTTATTTCTTAACAATTTTCTCACTCTTTAAATCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTTCTTATTTATTTCTTAACAATTTTCTCACTCTTTAAATCACA  550

seq1  TGGGGCCTCCTGCTTGAAGGACAAGTGGGCATTACTGAGTCAGAAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTCCTGCTTGAAGGACAAGTGGGCATTACTGAGTCAGAAATAAA  600

seq1  TACAGTAGTGCCTGCCTGGACGGATGGGTGGTAAGTCCCAAGTCCTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGTGCCTGCCTGGACGGATGGGTGGTAAGTCCCAAGTCCTAAAT  650

seq1  ATAGATGAGCTGGACCATGCAAGACTACATTATACAACTGAGAATGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGAGCTGGACCATGCAAGACTACATTATACAACTGAGAATGGTTT  700

seq1  AAACTTATAAGGAAGGCCCAGCAGGCTACCTGAGATTCTTTCCCCATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATAAGGAAGGCCCAGCAGGCTACCTGAGATTCTTTCCCCATTCC  750

seq1  CTCTCCATTTCAGGTTACTCCAAAGCTCTGTGACTTACTGTTCACCATGG  800
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCT-CATTTCA-GTTACTCCAAAGCTCTGTGACTTACTGTTCACCATGG  798

seq1  ACTCTCTCCTTCTGGGCCCTCTACCTCTCTCTGGGACTCAGTAGATTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCCTTCTGGGCCCTCTACCTCTCTCTGGGACTCAGTAGATTGCA  848

seq1  GTTTGTTCTCCAGCAGTGATCTTTCAAGTTTCCCATGGGGCATAGAATGG  900
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  GTTTGTTCTCCAGCAGTGATCTTTCAAG-TTCCCATGGGGCATAG-ATGG  896

seq1  AGATAGAGATAAGCATCCAGAGATCCTTTTTGCAGCACCCCCCAAATTTG  950
      ||||||||||||||||||||||||| |||||  | ||||||| || ||  
seq2  AGATAGAGATAAGCATCCAGAGATCTTTTTTTGAACACCCCCAAAGTTGC  946

seq1  GGCTACTTTAAA  962
      ||||||||||||
seq2  GGCTACTTTAAA  958