BAC Information

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BAC

Clone NameB6Ng01-023G01
Chromosome10 (Build37)
Map Location 17,990,308 - 18,124,019
singlet/doubletdoublet
Overlap geneLOC627646
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a
Downstream geneNhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023G01.bB6Ng01-023G01.g
ACCDH855316DH855317
length933524
definitionDH855316|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G01, 5' end.DH855317|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,990,308 - 17,991,237)(18,123,490 - 18,124,019)
sequence
gaattcagttaccaatgacgggtaagatctacacttcttgaggggatgcc
taagacccgacactgtctttctgccctaatagctgggacagttttggctt
atgtatatgtaaagggggacatgtggggagcacctccgagttaactcttg
ctgacttcttgcttgtgattaatcatgaacgagtctgccgacatttgtct
ttgtctttagttaagacatccgtcatatcttgccaagttcttccgtttct
gcatatgtccttgagagactatacaagtctgaaggaggtggatttagtca
aatatagatacagtgtcccatgtagataaacagccccagactcttggaat
aatgactctgagactcaaatatgcttaaaaatacctaggctaaaagcttt
ggttgttccccaattagatcataattaatatcccatttattctggtctaa
gttctgccacatagatggttacctctaatcagctcccatgcttctgatat
cctccatgttcccaggctcattcctgtcttatctctctcccagaattcag
tctgcatgtcctattttctgtttcctgcctaagcttataggttaatcggc
attttattgacaggtgatgcatctgtagagtacacaaagagattttctct
acagctgggttctagaacatctcatcaaaaagtcatgcatgtaaaagctt
ttagtggcagagccatggcactagaagcagctacctagagggagggcagg
acaatgtttgtctgtaaggacagaatctgagaaatactaggtttccaatt
ttgcctccctgtgtgactgtaagctcattgttctttggcacagtagactt
tggagagttggctctggcagtttcctcaaggaatttgtgctgaaaacatc
tttatcaaagaagatttttagagcagggttgca
atttcaagtgccatgagttcttttggcttctaagtgacttctagtttcca
tgtgaagctcatctgttctgttgaagcaaggagggaagggaggggagaag
aggccggcagagaacagtgctgggttgttgactgggtgggtatgcttggt
caccctggacagtaatagggagccgatctgaaggctttagaacagagaca
aaaggggcaggagacacacacagcagtagacagcttgaactgggggaggg
aaagaacagagcaatgtgtcccttatcgcattaccacccaaatctcccag
acgaggaccctcagggactttttacttctggaaaagggtagagtaggtcc
caactgtcacttcttatgaataatttaagagcagagttaagtgaaaatct
ttctgggcagtaatttgtacacactaataattcaagtctatctccacggg
caaactgagagaacttttagtctgatttgaggaatgggtgtttagttttt
gcttggttagtatggtgtttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17990308_17991237
seq2: B6Ng01-023G01.b_35_967

seq1  GAATTCAGTTACCAATGACGGGTAAGATCTACACTTCTTGAGGGGATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTACCAATGACGGGTAAGATCTACACTTCTTGAGGGGATGCC  50

seq1  TAAGACCCGACACTGTCTTTCTGCCCTAATAGCTGGGACAGTTTTGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCCGACACTGTCTTTCTGCCCTAATAGCTGGGACAGTTTTGGCTT  100

seq1  ATGTATATGTAAAGGGGGACATGTGGGGAGCACCTCCGAGTTAACTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGTAAAGGGGGACATGTGGGGAGCACCTCCGAGTTAACTCTTG  150

seq1  CTGACTTCTTGCTTGTGATTAATCATGAACGAGTCTGCCGACATTTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTTGCTTGTGATTAATCATGAACGAGTCTGCCGACATTTGTCT  200

seq1  TTGTCTTTAGTTAAGACATCCGTCATATCTTGCCAAGTTCTTCCGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTAGTTAAGACATCCGTCATATCTTGCCAAGTTCTTCCGTTTCT  250

seq1  GCATATGTCCTTGAGAGACTATACAAGTCTGAAGGAGGTGGATTTAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTCCTTGAGAGACTATACAAGTCTGAAGGAGGTGGATTTAGTCA  300

seq1  AATATAGATACAGTGTCCCATGTAGATAAACAGCCCCAGACTCTTGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGATACAGTGTCCCATGTAGATAAACAGCCCCAGACTCTTGGAAT  350

seq1  AATGACTCTGAGACTCAAATATGCTTAAAAATACCTAGGCTAAAAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCTGAGACTCAAATATGCTTAAAAATACCTAGGCTAAAAGCTTT  400

seq1  GGTTGTTCCCCAATTAGATCATAATTAATATCCCATTTATTCTGGTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTCCCCAATTAGATCATAATTAATATCCCATTTATTCTGGTCTAA  450

seq1  GTTCTGCCACATAGATGGTTACCTCTAATCAGCTCCCATGCTTCTGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCCACATAGATGGTTACCTCTAATCAGCTCCCATGCTTCTGATAT  500

seq1  CCTCCATGTTCCCAGGCTCATTCCTGTCTTATCTCTCTCCCAGAATTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGTTCCCAGGCTCATTCCTGTCTTATCTCTCTCCCAGAATTCAG  550

seq1  TCTGCATGTCCTATTTTCTGTTTCCTGCCTAAGCTTATAGGTTAATCGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGTCCTATTTTCTGTTTCCTGCCTAAGCTTATAGGTTAATCGGC  600

seq1  ATTTTATTGACAGGTGATGCATCTGTAGAGTACAC-AAGAGATTTTCTCT  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTTATTGACAGGTGATGCATCTGTAGAGTACACAAAGAGATTTTCTCT  650

seq1  ACAGCTGGGTTCTAGAACATCTCATC-AAAAGTCATGCATGTAAAAGC-T  697
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  ACAGCTGGGTTCTAGAACATCTCATCAAAAAGTCATGCATGTAAAAGCTT  700

seq1  CTAGTGGCAGAGCCATGGCACTAGAAGCAGCTACCTAGAGGGAGGGCAGG  747
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGCAGAGCCATGGCACTAGAAGCAGCTACCTAGAGGGAGGGCAGG  750

seq1  ACAATG-TTGTCTGTAAGGACAGAATCTGAGAAATACTAGGTTTCCAATT  796
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTTGTCTGTAAGGACAGAATCTGAGAAATACTAGGTTTCCAATT  800

seq1  TTGCCT-CCTGTGTGACTGTAAGCTCATTGTTC-TTGGCACAGTAGACTT  844
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGCCTCCCTGTGTGACTGTAAGCTCATTGTTCTTTGGCACAGTAGACTT  850

seq1  TGGAGAGTTGGCTCTGGCAGTTTCCTCAAGGAATTTGTGCTGAAAAACAG  894
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  TGGAGAGTTGGCTCTGGCAGTTTCCTCAAGGAATTTGTGCTG-AAAACAT  899

seq1  TCTTATCAAAGAAGATTTTATAGAGCATGGGTTGCA  930
        ||||||||||||||||| ||||||| ||||||||
seq2  CTTTATCAAAGAAGATTTT-TAGAGCA-GGGTTGCA  933

seq1: chr10_18123490_18124019
seq2: B6Ng01-023G01.g_68_597 (reverse)

seq1  AAACAAACACCATACTAACCAAGCAAAAACTAAACACCCATTCCTCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACACCATACTAACCAAGCAAAAACTAAACACCCATTCCTCAAAT  50

seq1  CAGACTAAAAGTTCTCTCAGTTTGCCCGTGGAGATAGACTTGAATTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAAAAGTTCTCTCAGTTTGCCCGTGGAGATAGACTTGAATTATTA  100

seq1  GTGTGTACAAATTACTGCCCAGAAAGATTTTCACTTAACTCTGCTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACAAATTACTGCCCAGAAAGATTTTCACTTAACTCTGCTCTTAA  150

seq1  ATTATTCATAAGAAGTGACAGTTGGGACCTACTCTACCCTTTTCCAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCATAAGAAGTGACAGTTGGGACCTACTCTACCCTTTTCCAGAAG  200

seq1  TAAAAAGTCCCTGAGGGTCCTCGTCTGGGAGATTTGGGTGGTAATGCGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTCCCTGAGGGTCCTCGTCTGGGAGATTTGGGTGGTAATGCGAT  250

seq1  AAGGGACACATTGCTCTGTTCTTTCCCTCCCCCAGTTCAAGCTGTCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACACATTGCTCTGTTCTTTCCCTCCCCCAGTTCAAGCTGTCTACT  300

seq1  GCTGTGTGTGTCTCCTGCCCCTTTTGTCTCTGTTCTAAAGCCTTCAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTGTCTCCTGCCCCTTTTGTCTCTGTTCTAAAGCCTTCAGATC  350

seq1  GGCTCCCTATTACTGTCCAGGGTGACCAAGCATACCCACCCAGTCAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTATTACTGTCCAGGGTGACCAAGCATACCCACCCAGTCAACAA  400

seq1  CCCAGCACTGTTCTCTGCCGGCCTCTTCTCCCCTCCCTTCCCTCCTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTGTTCTCTGCCGGCCTCTTCTCCCCTCCCTTCCCTCCTTGCT  450

seq1  TCAACAGAACAGATGAGCTTCACATGGAAACTAGAAGTCACTTAGAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAACAGATGAGCTTCACATGGAAACTAGAAGTCACTTAGAAGCC  500

seq1  AAAAGAACTCATGGCACTTGAAATGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  AAAAGAACTCATGGCACTTGAAATGAATTC  530