BAC Information

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BAC

Clone NameB6Ng01-023M23
Chromosome3 (Build37)10 (Build37)
Map Location 45,498,497 - 45,499,532104,053,666 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneLOC433580
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023M23.bB6Ng01-023M23.g
ACCDH855628DH855629
length1,0361,027
definitionDH855628|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M23, 5' end.DH855629|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,498,497 - 45,499,532)(104,053,666 - 104,054,363)
sequence
gaattctttttcaccttctaattttagctggcggatcagttcatttctat
taagaaacagaaatatgacttcatattaatgatggaatcaaaacagatgg
agctatctaatggttcaggcaggaaatgagaggaggaattatagcttctt
acacttatatccaccactgattcagtcaatgaccttgggcaaattactta
agctgccaggtcaaattctctaagtgcacatctttttttctttctttctt
tctttcttttttcttaatgcccagagctcatattaacagaaaggaaactc
tagagacataggaaaaggaaatgatataatctagacaggagaaaaaaaag
cccttggcatgaaacagattaagtggcttacccaaagtttcacagtcagt
gtgtggactgagattcaaattcaactttgtgacacactgagcttcaattt
ctcagtctctgaggtcagaagtagatatacattgaatatagattacagta
atgagaaatttgcccaacaaactgtaggtatgaatatgtactatcttttc
tgttttccagtaataaagagtaattgtgtttacatttacaatttttaaat
aggattgtaatttgtctatgtgtatgtgtgcttgtatctcatgtatgtag
aaatgtatggaggtcagaagtgggcatgaggtacctggaactggggttac
atatgattatgaatttcagatagaccctgagacctgattctcgatcttct
gcaagagccatatgctctcttaactgaagaaccataattccacccacaaa
aatttcctttcttaaatagtttatggattcatgtttatttaaggaagact
ttatcaccccaattctatggttaccagacctgactagacattcattaaag
cttgttcttccataacaccatggcttttccacattctgtttcatgattgt
gctgtttaacgcataaagtgcaacatagcactttgtagcccagttactaa
agtatttatagcacaatatgtgaagccaagatctct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccgtgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaagtcacacaatatgtactcactgataagtggatattagccccaaacc
taggatttccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagaaacagccttatttataattgcaa
gatgctggaaagaacacagatgtccctcaacagaggaatggatacagaaa
atgtggtacatttacacaatggagtactactcggccataaaaacaatgaa
ttcatgaaattcttagacaaatggatgtatctgaggatattatcctaagt
gagttaacccaatcacaaaagaacatacatgatttgcactcactgatagt
agatattagtccagaatatattttcttaatgcttaggaatattttgattg
tcattcattttgtagatttttgaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45498497_45499532
seq2: B6Ng01-023M23.b_48_1083

seq1  GAATTCTTTTTCACCTTCTAATTTTAGCTGGCGGATCAGTTCATTTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCACCTTCTAATTTTAGCTGGCGGATCAGTTCATTTCTAT  50

seq1  TAAGAAACAGAAATATGACTTCATATTAATGATGGAATCAAAACAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACAGAAATATGACTTCATATTAATGATGGAATCAAAACAGATGG  100

seq1  AGCTATCTAATGGTTCAGGCAGGAAATGAGAGGAGGAATTATAGCTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTAATGGTTCAGGCAGGAAATGAGAGGAGGAATTATAGCTTCTT  150

seq1  ACACTTATATCCACCACTGATTCAGTCAATGACCTTGGGCAAATTACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATATCCACCACTGATTCAGTCAATGACCTTGGGCAAATTACTTA  200

seq1  AGCTGCCAGGTCAAATTCTCTAAGTGCACATCTTTTTTTCTTTCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAGGTCAAATTCTCTAAGTGCACATCTTTTTTTCTTTCTTTCTT  250

seq1  TCTTTCTTTTTTCTTAATGCCCAGAGCTCATATTAACAGAAAGGAAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTTTCTTAATGCCCAGAGCTCATATTAACAGAAAGGAAACTC  300

seq1  TAGAGACATAGGAAAAGGAAATGATATAATCTAGACAGGAGAAAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACATAGGAAAAGGAAATGATATAATCTAGACAGGAGAAAAAAAAG  350

seq1  CCCTTGGCATGAAACAGATTAAGTGGCTTACCCAAAGTTTCACAGTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCATGAAACAGATTAAGTGGCTTACCCAAAGTTTCACAGTCAGT  400

seq1  GTGTGGACTGAGATTCAAATTCAACTTTGTGACACACTGAGCTTCAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACTGAGATTCAAATTCAACTTTGTGACACACTGAGCTTCAATTT  450

seq1  CTCAGTCTCTGAGGTCAGAAGTAGATATACATTGAATATAGATTACAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTCTGAGGTCAGAAGTAGATATACATTGAATATAGATTACAGTA  500

seq1  ATGAGAAATTTGCCCAACAAACTGTAGGTATGAATATGTACTATCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATTTGCCCAACAAACTGTAGGTATGAATATGTACTATCTTTTC  550

seq1  TGTTTTCCAGTAATAAAGAGTAATTGTGTTTACATTTACAATTTTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAGTAATAAAGAGTAATTGTGTTTACATTTACAATTTTTAAAT  600

seq1  AGGATTGTAATTTGTCTATGTGTATGTGTGCTTGTATCTCATGTATGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTAATTTGTCTATGTGTATGTGTGCTTGTATCTCATGTATGTAG  650

seq1  AAATGTATGGAGGTCAGAAGTGGGCATGAGGTACCTGGAACTGGGGTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATGGAGGTCAGAAGTGGGCATGAGGTACCTGGAACTGGGGTTAC  700

seq1  ATATGATTATGAA-TTCAGATAGACCCTGAGACCTGATTCTCGATCTTCT  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATATGATTATGAATTTCAGATAGACCCTGAGACCTGATTCTCGATCTTCT  750

seq1  GCAAGAGCCATATGCTCTCTTAACTGAAGAACCATAATTCCACCCACAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGCCATATGCTCTCTTAACTGAAGAACCATAATTCCACCCACAAA  800

seq1  AATTTCCTTTCTTAAAATAGTTTATGGATTCATGTTTATTTAAGGAAGAC  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTTCTT-AAATAGTTTATGGATTCATGTTTATTTAAGGAAGAC  849

seq1  TTTATCACCCCAATTCTATGGTTACCAGACCTGACTAGACATTCATTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACCCCAATTCTATGGTTACCAGACCTGACTAGACATTCATTAAA  899

seq1  GCTTGTTCTTCCATAACACCATGGCTTTTCCACA-TCTGTTTCATGATTG  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTTGTTCTTCCATAACACCATGGCTTTTCCACATTCTGTTTCATGATTG  949

seq1  TGCTGTTTAACGCATAAAGTGCACACATAGCACTTTGTAGCCCAG-TACT  997
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TGCTGTTTAACGCATAAAGTGCA-ACATAGCACTTTGTAGCCCAGTTACT  998

seq1  AGAGTATATATAGCACAATAAGGTGAAGCCAAGATCTCT  1036
      | ||||| ||||||||||| | |||||||||||||||||
seq2  AAAGTATTTATAGCACAAT-ATGTGAAGCCAAGATCTCT  1036

seq1: chr10_104053666_104054363
seq2: B6Ng01-023M23.g_66_551 (reverse)

seq1  CATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAATG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAAT  200
                                                   |||| 
seq2  --------------------------------------------CATAAA  6

seq1  TTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAATAG--CTC  248
      || |||  |    ||||||   ||                | |||  |||
seq2  TTCATTCTT----TTTAATAGCTG----------------AGTAGTACTC  36

seq1  CATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGC  298
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  CATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGC  86

seq1  ATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAAT  348
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  ATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAAC  136

seq1  ATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATAT  398
      |||||||||||||||||||||||||| |||||  ||||||||||||||||
seq2  ATAGTGGAGCATGTGTCCTTCTTACCAGTTGGAACATCTTCTGGATATAT  186

seq1  GCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTC  448
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTC  236

seq1  TGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCC  498
      ||| |||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TGAGGAACTGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCC  286

seq1  CACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCT  548
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATCT  336

seq1  GCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGA  598
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTGTCACCTGAATTTTTCATCTTAGCCATTCTGACTGGTGTGAGGTGGA  386

seq1  ATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAA  648
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAA  436

seq1  CATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  486