BAC Information

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BAC

Clone NameB6Ng01-024A17
Chromosome10 (Build37)X (Build37)
Map Location 104,054,042 - 104,054,363142,135,711 - 142,136,845
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024A17.bB6Ng01-024A17.g
ACCDH855793DH855794
length1,0451,132
definitionDH855793|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A17, 5' end.DH855794|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,054,042 - 104,054,363)(142,135,711 - 142,136,845)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaacatgaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaggggttggtgagatggctca
gtgggtaagagcacccaactgctcttccaaaggtccggagttcaaatccc
agcaaccacatggtggctcacaaccatccgtaataacatctgactccctc
ttctggaatatctgaagacagctacagtgtacctacatataataaataaa
taaataaatcttaaaaaaattagaacaacaaccactctggaaatcagtct
ggggttcctcagaaaattggacatagtactaccggaggatcccacaatac
ctctgctgggcatatatccagaagatgtcccaaccagtaagaaggacaca
tgctccactatgttcatagcagccttatttataatagccagaagctggat
agaacccagatgcccctcaacagaggaatggatacagaaaatatggtaca
tttacacaatggagtactactcagctattaaaaagaatgaatttatgaaa
ttcctaggcaagtggatggacctggagggcatcatcctgagtgaggtaac
acattcacaaaggaactcacacaatatgtactcactgataagtggatatt
agcccaaaacctaggatatccaagatataagatacaatttgctcaacaca
tgaaactcaagaagaatgaagactaaagtgtggacactatgccccttctt
agaagtgggaagaaaacacccatggaaggagttacagagacaagtttgga
gctgaaacgaaagatggaccatctagagactaacatatccagggatccac
cccataatcagctccaaacgctaacacattgcataacctagcaaa
gaattctcttcaacagtgtgggttaaattgtatatactgcttgtatggtt
aagagaacatcagtacgttcttaaaatatcaccttttctaagtaactgag
cactattaaatgtatttatagataggttacagtgtgacatttcaatacag
gtattcaatgtaattaatacatctgtcatctgaaatacttatcatttctt
tgtgtttggaacatttaaaatcctttcttcaagttattgtaaagtatata
aagaaatcttgtaaactatacttagcctactgtgctataaaatattagca
gtcactcctcatattcatttctggatatcttaagcatcttctgatgagcc
cctctgcacacaccatttctagtcttgagttactccgctattctagtctt
acctcttttgagattaactttttacttttgtatataagtgaggcaaaaaa
aaaacacttctctaaagaaattaaaatatttaatttactgtattgaagat
caataaatgatgaatcaccaccctcaggtcaggcagcgctaaatttacat
aaatattgatttatatagccacggatttcttcttcattgtgacctttata
ttgtcaataacagaaatatatgaccaaatacatcacagttcttagtaaat
gaatggtacatgaatcataatcactgtaatcatttttgaatttatgataa
ttgaactcttaatggtaagaataaggcacattaagttcatttccataaat
gatctgttaagaacttataagctctgggcaccaacaattaagagtatata
gagctcttgtagaggagctaagtttgatttttacgtacccacattggggt
ccaagggggatcaaatgcctttggccaccacagaaaatagcattcactta
tacatacgtaagcggtacataagcacttaattaaagattgaggataacat
cttctaaaggataatttatgcatttgttaaagcatgaatatttgtatttt
taaacaatgcatggcggtcacattggtgtttctgaaattttctgtctgcc
aagcaatgactcctttcagtaatataatcttgaacaaaataccatttatg
aaacttctaagaaagcttttgtggtggttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104054042_104054363
seq2: B6Ng01-024A17.b_44_576 (reverse)

seq1  TTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCC  50
      ||||| |||||||||||||||||||||| ||||||||||  |||||||||
seq2  TTGGGACATCTTCTGGATATATGCCCAGCAGAGGTATTGTGGGATCCTCC  50

seq1  GGTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGAT--------  92
      ||||||||||||||||||||||||| ||||| |||||| |||        
seq2  GGTAGTACTATGTCCAATTTTCTGAGGAACC-CCAGACTGATTTCCAGAG  99

seq1  --------------------------------------------------  92
                                                        
seq2  TGGTTGTTGTTCTAATTTTTTTAAGATTTATTTATTTATTTATTATATGT  149

seq1  --------------------------------------------------  92
                                                        
seq2  AGGTACACTGTAGCTGTCTTCAGATATTCCAGAAGAGGGAGTCAGATGTT  199

seq1  --------------------------------------------------  92
                                                        
seq2  ATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGG  249

seq1  --------------------------------------------------  92
                                                        
seq2  ACCTTTGGAAGAGCAGTTGGGTGCTCTTACCCACTGAGCCATCTCACCAA  299

seq1  ----TTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGA  138
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGA  349

seq1  GTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTT  399

seq1  TTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTT  238
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTT  449

seq1  GATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCT  499

seq1  TCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  322
      ||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  533

seq1: chrX_142135711_142136845
seq2: B6Ng01-024A17.g_68_1199

seq1  GAATTCTCTTCAACAGTGTGGGTTAAATTGTATATACTGCTTGTATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAACAGTGTGGGTTAAATTGTATATACTGCTTGTATGGTT  50

seq1  AAGAGAACATCAGTACGTTCTTAAAATATCACCTTTTCTAAGTAACTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACATCAGTACGTTCTTAAAATATCACCTTTTCTAAGTAACTGAG  100

seq1  CACTATTAAATGTATTTATAGATAGGTTACAGTGTGACATTTCAATACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTAAATGTATTTATAGATAGGTTACAGTGTGACATTTCAATACAG  150

seq1  GTATTCAATGTAATTAATACATCTGTCATCTGAAATACTTATCATTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAATGTAATTAATACATCTGTCATCTGAAATACTTATCATTTCTT  200

seq1  TGTGTTTGGAACATTTAAAATCCTTTCTTCAAGTTATTGTAAAGTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGGAACATTTAAAATCCTTTCTTCAAGTTATTGTAAAGTATATA  250

seq1  AAGAAATCTTGTAAACTATACTTAGCCTACTGTGCTATAAAATATTAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCTTGTAAACTATACTTAGCCTACTGTGCTATAAAATATTAGCA  300

seq1  GTCACTCCTCATATTCATTTCTGGATATCTTAAGCATCTTCTGATGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCTCATATTCATTTCTGGATATCTTAAGCATCTTCTGATGAGCC  350

seq1  CCTCTGCACACACCATTTCTAGTCTTGAGTTACTCCGCTATTCTAGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCACACACCATTTCTAGTCTTGAGTTACTCCGCTATTCTAGTCTT  400

seq1  ACCTCTTTTGAGATTAACTTTTTACTTTTGTATATAAGTGAGGCAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTTGAGATTAACTTTTTACTTTTGTATATAAGTGAGGCAAAAAA  450

seq1  AAAACACTTCTCTAAAGAAATTAAAATATTTAATTTACTGTATTGAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTTCTCTAAAGAAATTAAAATATTTAATTTACTGTATTGAAGAT  500

seq1  CAATAAATGATGAATCACCACCCTCAGGTCAGGCAGCGCTAAATTTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATGATGAATCACCACCCTCAGGTCAGGCAGCGCTAAATTTACAT  550

seq1  AAATATTGATTTATATAGCCACGGATTTCTTCTTCATTGTGACCTTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGATTTATATAGCCACGGATTTCTTCTTCATTGTGACCTTTATA  600

seq1  TTGTCAATAACAGAAATATATGACCAAATACATCACAGTTCTTAGTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATAACAGAAATATATGACCAAATACATCACAGTTCTTAGTAAAT  650

seq1  GAATGGTACATGAATCATAATCACTGTAATCATTTTTGAATTTATGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTACATGAATCATAATCACTGTAATCATTTTTGAATTTATGATAA  700

seq1  TTGAACTCTTAATGGTAAGAATAAGGCACATTAAGTTCATTTCCATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTTAATGGTAAGAATAAGGCACATTAAGTTCATTTCCATAAAT  750

seq1  GATCTGTTAAGAACTTATAAGCTCTGGGCACCAACAATTAAGAGTATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTAAGAACTTATAAGCTCTGGGCACCAACAATTAAGAGTATATA  800

seq1  GAGCTCTTGTAGAGGAGCTAAGTTTGATTTTTACGTACCCACATTGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTGTAGAGGAGCTAAGTTTGATTTTTACGTACCCACATTGGGGT  850

seq1  CCAAGGGGGATCAAATGCCTTTGGCCACCACAGAAAATAGCATTCACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGGGATCAAATGCCTTTGGCCACCACAGAAAATAGCATTCACTTA  900

seq1  TACATACGTAAGCGGTAACATAAGCACTTAATTAAAGATTGAGGATAACA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACATACGTAAGCGGT-ACATAAGCACTTAATTAAAGATTGAGGATAACA  949

seq1  TCTTCTAAAGGATAATTTATGCAATTTGTTAAAGCATG-ATATATGTATT  999
      |||||||||||||||||||||| ||||||||||||||| |||| ||||||
seq2  TCTTCTAAAGGATAATTTATGC-ATTTGTTAAAGCATGAATATTTGTATT  998

seq1  TTTAATACAATGCATGGCGTCAACATTGGTGTTTCTGAAATTTTCTGTCT  1049
      ||||| |||||||||||||   ||||||||||||||||||||||||||| 
seq2  TTTAA-ACAATGCATGGCGGTCACATTGGTGTTTCTGAAATTTTCTGTC-  1046

seq1  TGCCAAGCAATGACTCCTTTTCAGTAATTATGAATTCTGAACAAAATTAC  1099
      ||||||||||||||||| ||||||||| ||| |||  ||||||||||  |
seq2  TGCCAAGCAATGACTCC-TTTCAGTAA-TAT-AATCTTGAACAAAATACC  1093

seq1  TATTATGAAACTTTCTAAGAAATGCTTT-----TTGTTGTT  1135
        ||||||||| |||||||||| |||||     | ||||||
seq2  ATTTATGAAAC-TTCTAAGAAA-GCTTTTGTGGTGGTTGTT  1132