BAC Information

Click to search

BAC

Clone NameB6Ng01-024C23
Chromosome10 (Build37)
Map Location 49,613,312 - 49,794,770
singlet/doubletdoublet
Overlap genenone
Upstream geneGrik2
Downstream geneLOC629652, Ascc3, Sim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024C23.bB6Ng01-024C23.g
ACCDH855898DH855899
length1,0831,050
definitionDH855898|Mus musculus domesticus DNA, BAC clone: B6Ng01-024C23, 5' end.DH855899|Mus musculus domesticus DNA, BAC clone: B6Ng01-024C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,793,680 - 49,794,770)(49,613,312 - 49,614,377)
sequence
gaattccagcgtacagccccctttctccttgttatttagtctatttgtta
tgatacactgaatgtcagagtcgtcttctctcctgagtaaaaactttctg
tagacacccttataaacacatccagagacgcatttcctcgtgattctctc
tccaatcaagctgataataaaaattaatcatcacatactctgatcccttc
ttaaagcgggtgggtgtatttggacagttactgggcttttcttcatagtc
cagagtctgatgatgtaattattgctgagagtgaagtggactgccctcca
catttcttctgcatgaagaataactcaagaccagagagtttgggtttctg
gggatggccaagtatagatgatgttagaatatgaacataaaggatgggaa
attggaaagtagcatgcatgtgggtgttcctgcactggtgagctaaagtg
tcaccttttagctagtgacacaaaacccaaaacacaggagaaagaaatgg
gcgtgttaagtttctgtgaggaactacattgtgtgaagaatagggagcat
ggcagcatttgctaaaaagagccttaactgtatttcactatttctttcct
gttttcttaagaattaaatgcaggttatatgtaatttttatttaattttg
tttgacaatttctatgattgtgataccatacctgactagatcacaacaga
cccctgtaattttcagattagaaatcatgacatattctacagtcaatata
tcttaaataaaattcctactaaatttagtttgtgaatcttcttttacctg
tgtaggaggcttggagttctgatgagacagcatgactatccttggatgtg
aggtaaagaaagagcaaagagtgaagaagcagaacaggcttaatttagaa
atgataccaagagaaaagggttgtgttctaaaataggtgtgtctttcgtg
tcagcagaaagctcagaaggtcactttattagaggggccaaggaagtaag
gcatagtacatgctcagacttctcttaagaaaggatctgtccatgaaaga
gccacatgggagctggacacaggcacttgcctg
gaattctattattttgaaagcaacatccaagttatttcagggacaacctg
ccactttttgttgctgaaccacaacaaaaaagttaattaaggatcacaaa
tagctggtgttgctttaattagataaaatagttattttctgcatggtcta
agaaacaccaagagaaactacttcttaagctactgaacagttttcacggg
gccttctggattttctcaagttcacaggcaataagtttaagtaaagcaaa
gcacagctagtactgaggggttagcagttgtgaggagtgaaaaattgaag
gatcctataaaaacattgtcaccaggttcttaaaatggttgagaatgtac
ctccatttcattaatatatagcctaaaaaatccacaaaggaaaatctcag
aagcaatccactgcacaatagtgaccttctctagtcaactcccagacttc
ctggtttcaccacaactgggtgaacatggtacacaaattttagggcccac
tggtgggtccaatgtgaatttaatactgctgccatgatccacttattttt
atacttagatcatggctttaagaggatagggactaaaatgtcctaacaga
gaaggaacaatgatgaaaatcgtttgttatcccaactgactaaaggtgaa
agcctgtatctgagtcacaaaccagggtttctgggttagaaatacttctc
caggatatactatgtgaaagaaaaactatttttaataaaagggaaaatga
atatggagaaataagttctcttactccccattgataatgatgtagtacct
gagcagaggtttaaaataagtatttatcatctactatagcatcagagcta
acattaagcaagcactgaggaacatagaagatatgataaatagaaagagt
taacagagcacgactcttaacatcaggcaaatcactaaactacgaatgac
aaagatgacctctaactgatgaaaaagaaaagatcacacagtattctgca
ggagcaagagctgtccgagggaaaactcagaagtataaacactaagcctc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49793680_49794770
seq2: B6Ng01-024C23.b_44_1126 (reverse)

seq1  CAGGCAAGTTGCCTGTGTCCAGCTCCACTGTGGCTCTTTCATGGACAGAC  50
      |||||||| |||||||||||||||||  ||||||||||||||||||||| 
seq2  CAGGCAAG-TGCCTGTGTCCAGCTCCCATGTGGCTCTTTCATGGACAGA-  48

seq1  TCCCTTTCTTAAGGAGAAGTCTGAGCATGTACTATGCCCTTACTTCCTTT  100
        |||||||||| ||||||||||||||||||||||| |||||||||| ||
seq2  -TCCTTTCTTAA-GAGAAGTCTGAGCATGTACTATG-CCTTACTTCC-TT  94

seq1  GGCCCCTCTAAT-AAGTGAACTTCCTGAGCCTTCTGCCTGACACGAAAGA  149
      |||||||||||| |||||| ||| |||||| ||||| |||||||||||| 
seq2  GGCCCCTCTAATAAAGTGACCTT-CTGAGCTTTCTG-CTGACACGAAAG-  141

seq1  ACACAACTATTTTAGAACACAACCCTTTTCTCTTGGTATCATTTCTAAAT  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTATTTTAGAACACAACCCTTTTCTCTTGGTATCATTTCTAAAT  191

seq1  TAAGCCTGTTCTGCTTCTTCACTCTTTGCTCTTTCTTTACCTCACATCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGTTCTGCTTCTTCACTCTTTGCTCTTTCTTTACCTCACATCCA  241

seq1  AGGATAGTCATGCTGTCTCATCAGAACTCCAAGCCTCCTACACAGGTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGTCATGCTGTCTCATCAGAACTCCAAGCCTCCTACACAGGTAAA  291

seq1  AGAAGATTCACAAACTAAATTTAGTAGGAATTTTATTTAAGATATATTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTCACAAACTAAATTTAGTAGGAATTTTATTTAAGATATATTGA  341

seq1  CTGTAGAATATGTCATGATTTCTAATCTGAAAATTACAGGGGTCTGTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAATATGTCATGATTTCTAATCTGAAAATTACAGGGGTCTGTTGT  391

seq1  GATCTAGTCAGGTATGGTATCACAATCATAGAAATTGTCAAACAAAATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGTCAGGTATGGTATCACAATCATAGAAATTGTCAAACAAAATTA  441

seq1  AATAAAAATTACATATAACCTGCATTTAATTCTTAAGAAAACAGGAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATTACATATAACCTGCATTTAATTCTTAAGAAAACAGGAAAGA  491

seq1  AATAGTGAAATACAGTTAAGGCTCTTTTTAGCAAATGCTGCCATGCTCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGAAATACAGTTAAGGCTCTTTTTAGCAAATGCTGCCATGCTCCC  541

seq1  TATTCTTCACACAATGTAGTTCCTCACAGAAACTTAACACGCCCATTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCACACAATGTAGTTCCTCACAGAAACTTAACACGCCCATTTCT  591

seq1  TTCTCCTGTGTTTTGGGTTTTGTGTCACTAGCTAAAAGGTGACACTTTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTGTTTTGGGTTTTGTGTCACTAGCTAAAAGGTGACACTTTAG  641

seq1  CTCACCAGTGCAGGAACACCCACATGCATGCTACTTTCCAATTTCCCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGTGCAGGAACACCCACATGCATGCTACTTTCCAATTTCCCATC  691

seq1  CTTTATGTTCATATTCTAACATCATCTATACTTGGCCATCCCCAGAAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTCATATTCTAACATCATCTATACTTGGCCATCCCCAGAAACC  741

seq1  CAAACTCTCTGGTCTTGAGTTATTCTTCATGCAGAAGAAATGTGGAGGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTCTGGTCTTGAGTTATTCTTCATGCAGAAGAAATGTGGAGGGC  791

seq1  AGTCCACTTCACTCTCAGCAATAATTACATCATCAGACTCTGGACTATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTTCACTCTCAGCAATAATTACATCATCAGACTCTGGACTATGA  841

seq1  AGAAAAGCCCAGTAACTGTCCAAATACACCCACCCGCTTTAAGAAGGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCCCAGTAACTGTCCAAATACACCCACCCGCTTTAAGAAGGGAT  891

seq1  CAGAGTATGTGATGATTAATTTTTATTATCAGCTTGATTGGAGAGAGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTATGTGATGATTAATTTTTATTATCAGCTTGATTGGAGAGAGAAT  941

seq1  CACGAGGAAATGCGTCTCTGGATGTGTTTATAAGGGTGTCTACAGAAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGAAATGCGTCTCTGGATGTGTTTATAAGGGTGTCTACAGAAAGT  991

seq1  TTTTACTCAGGAGAGAAGACGACTCTGACATTCAGTGTATCATAACAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCAGGAGAGAAGACGACTCTGACATTCAGTGTATCATAACAAAT  1041

seq1  AGACTAAATAACAAGGAGAAAGGGGGCTGTACGCTGGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAATAACAAGGAGAAAGGGGGCTGTACGCTGGAATTC  1083

seq1: chr10_49613312_49614377
seq2: B6Ng01-024C23.g_67_1116

seq1  GAATTCTATTATTTTGAAAGCAACATCCAAGTTATTTCAGGGACAACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTATTTTGAAAGCAACATCCAAGTTATTTCAGGGACAACCTG  50

seq1  CCACTTTTTGTTGCTGAACCACAACAAAAAAGTTAATTAAGGATCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTTGTTGCTGAACCACAACAAAAAAGTTAATTAAGGATCACAAA  100

seq1  TAGCTGGTGTTGCTTTAATTAGATAAAATAGTTATTTTCTGCATGGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTGTTGCTTTAATTAGATAAAATAGTTATTTTCTGCATGGTCTA  150

seq1  AGAAACACCAAGAGAAACTACTTCTTAAGCTACTGAACAGTTTTCACGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACCAAGAGAAACTACTTCTTAAGCTACTGAACAGTTTTCACGGG  200

seq1  GCCTTCTGGATTTTCTCAAGTTCACAGGCAATAAGTTTAAGTAAAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTGGATTTTCTCAAGTTCACAGGCAATAAGTTTAAGTAAAGCAAA  250

seq1  GCACAGCTAGTACTGAGGGGTTAGCAGTTGTGAGGAGTGAAAAATTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTAGTACTGAGGGGTTAGCAGTTGTGAGGAGTGAAAAATTGAAG  300

seq1  GATCCTATAAAAACATTGTCACCAGGTTCTTAAAATGGTTGAGAATGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTATAAAAACATTGTCACCAGGTTCTTAAAATGGTTGAGAATGTAC  350

seq1  CTCCATTTCATTAATATATAGCCTAAAAAATCCACAAAGGAAAATCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTCATTAATATATAGCCTAAAAAATCCACAAAGGAAAATCTCAG  400

seq1  AAGCAATCCACTGCACAATAGTGACCTTCTCTAGTCAACTCCCAGACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCCACTGCACAATAGTGACCTTCTCTAGTCAACTCCCAGACTTC  450

seq1  CTGGTTTCACCACAACTGGGTGAACATGGTACACAAATTTTAGGGCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCACCACAACTGGGTGAACATGGTACACAAATTTTAGGGCCCAC  500

seq1  TGGTGGGTCCAATGTGAATTTAATACTGCTGCCATGATCCACTTATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTCCAATGTGAATTTAATACTGCTGCCATGATCCACTTATTTTT  550

seq1  ATACTTAGATCATGGCTTTAAGAGGATAGGGACTAAAATGTCCTAACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGATCATGGCTTTAAGAGGATAGGGACTAAAATGTCCTAACAGA  600

seq1  GAAGGAACAATGATGAAAATCGTTTGTTATCCCAACTGACTAAAGGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACAATGATGAAAATCGTTTGTTATCCCAACTGACTAAAGGTGAA  650

seq1  AGCCTGTATCTGAGTCACAAACCAGGGTTTCTGGGTTAGAAATACTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTATCTGAGTCACAAACCAGGGTTTCTGGGTTAGAAATACTTCTC  700

seq1  CAGGATATACTATGTGAAAGAAAAACTATTTTTAATAAAAGGGAAAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATACTATGTGAAAGAAAAACTATTTTTAATAAAAGGGAAAATGA  750

seq1  ATATGGAGAAATAAGTTCTCTTACTCCCCATTGATAATGATGTAGTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGAAATAAGTTCTCTTACTCCCCATTGATAATGATGTAGTACCT  800

seq1  GAGCAGAGGTTTAAAATAAGTATTTATCATCTACTATAGCATCAGAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGGTTTAAAATAAGTATTTATCATCTACTATAGCATCAGAGCTA  850

seq1  ACATTAAGCAAGCACTGAGGAACAATAGAAGATATGATAAATAAGAAAGA  900
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  ACATTAAGCAAGCACTGAGGAAC-ATAGAAGATATGATAAAT-AGAAAGA  898

seq1  GTTAACAGAAGCACGACTCTTAACATCAGGGCAAAATCACTTAAACTACG  950
      |||||||| |||||||||||||||||||||   ||||||| |||||||||
seq2  GTTAACAG-AGCACGACTCTTAACATCAGG--CAAATCAC-TAAACTACG  944

seq1  AAAATGACAAAGATGAACTCTAAACTGATGAAAAAAGAAAAGATCACACA  1000
        |||||||||||||| |||| |||||||| |||||||||||||||||||
seq2  --AATGACAAAGATGACCTCT-AACTGATG-AAAAAGAAAAGATCACACA  990

seq1  GTTAATTCTGCAGGAGCAAAGAGCCTGTCCAGAGGGACAAACTCAGAAGT  1050
      ||  ||||||||||||| ||||| |||||| |||||| ||||||||||||
seq2  GT--ATTCTGCAGGAGC-AAGAG-CTGTCC-GAGGGA-AAACTCAGAAGT  1034

seq1  ATAAACATCAAGCCTC  1066
      |||||||  |||||||
seq2  ATAAACACTAAGCCTC  1050