BAC Information

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BAC

Clone NameB6Ng01-024D09
Chromosome10 (Build37)
Map Location 47,395,636 - 47,546,077
singlet/doubletdoublet
Overlap geneLOC100041663
Upstream geneLOC100041632, LOC668252, LOC100042387
Downstream geneLOC100042398, LOC546562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024D09.bB6Ng01-024D09.g
ACCDH855916DH855917
length1,1561,057
definitionDH855916|Mus musculus domesticus DNA, BAC clone: B6Ng01-024D09, 5' end.DH855917|Mus musculus domesticus DNA, BAC clone: B6Ng01-024D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,395,636 - 47,396,627)(47,545,007 - 47,546,077)
sequence
gaattccataaaattcacaacaagaaacctgtagtatattcacagaggac
ctgaaacagactcctgcaggacttgttcatgctatttcagagtctgtgaa
ttcatatatgttttatcaggttgatttaaagatccttagttcttcttgtc
ctgggtttcctctagatcttacactctttccacttcctgttcctcagggt
tccctgagatctgtggcaagaatttgatgaagacataccactttgagctg
aatgttccaaggtctctctctctctgcataattcctggctgtaggtctct
gtatttgttccaacttgctgcaggagaaaatataactgctggtagctgaa
ttaagcaaggatctttgagtatagtaaaaaatcattaggagtcacttaat
cactatgattttgtttagttttattcagactattatttttggtttttatg
taagtcactttattatttagtctcaggcttttggtcatccaaatagtgga
gggtataaattgcattttgtggagagggaaggcttcatatcaagtcagct
acttattggttggttactcttaaaaggtttgtgtcaccattgtcctgacc
atcaggcctctattatagaacagaaagcttgtggctggctttgtgtttag
atctttcttttagtagcatgcagagcacatttctttattaattgctttca
tattgaaagtaaaagtcatacgctgtactctgatcacattttttttttgc
tattgccaattcctctcagatctccataccttcatagccacccaagtaaa
tgcccctttcttcactctcttttaataaatacatgtataaacaaagaaaa
agaaactcatataaaaataaacctcacagaaatacaaaatggaaaggaaa
atataagaaaattagaataagaataatgattccccataaagcaatatgag
acataatagactacaaaatatcattgagtttattttgtgtgaccattatt
cctggatatggcgataccccaaattatgttataaccccgtagaccccact
tgagatgtacttttcttgcagtggttcagtattaactccttgttagggag
agccacactcagttccactccaatacaagaaagtaggtgaattatgaaca
tccggg
gaattctccagaaaaagacttcattgagcattctttaattgtggggaaca
aaggctacttaaaactttggggagtgggcacaggcttcagtatatgtcag
tggacactggtcagggctaatggcctggcaatgccttacttacatgaaga
ggtattccaggtgtttctggacatgactttataaggtgggaagaagttac
catataacctggatataagtctctctgaccacctcaaaagtggcagaggt
gggggttggctggtaagttacatgcttggaaacatgaagtcccagacaca
gggaatatgtgtcggagagaattctattcctacagatctcaggatgagat
ttctagagtttggatttccttgacctgactcttgccccaggcctacaccc
cacagttccttcaatggctcctctggtgccacaaaaacatatgtacagaa
tggtatcacagtaagtagtgtactctacctgaaaaatgctgaggaaagct
ataaaattatcatcagtgacatgataacaatgaaagacaatactgacgtt
cagttggaagtttcaagtgtatatggatataaataacaagtatgcatttt
gtaagaacttcatgaaattctctcattcttaaaattaggtaagacctctt
tgtattagaaacacagagactctgtagagagccaagaattaggtatgcac
ggtttctggtttccactactagccacaaggtagaaatttcttcagtgagt
cagatgatccccacaaaaaaagctctaactagatagaggccttgatccta
ggagtataagtatatggattctaccaagagctggggccaaatgctaggca
acactttctactatataatttatttctacctacccaaaagctgggttcaa
ctgtctcctttcacattcattcacaagaaattcatagaggttaaaagttc
acatgatattaaaataatctggctgcagtgggagaagatatgctaatctg
cagagacttatgtaccagatgggtgatacttaaagacttacctcccacag
aaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_47395636_47396627
seq2: B6Ng01-024D09.b_240_1201

seq1  CAGGGTTCCCTGAGATCTGTGGCAAGAATTTGATGAAGACATACCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCCCTGAGATCTGTGGCAAGAATTTGATGAAGACATACCACTTT  50

seq1  GAGCTGAATGTTCCAAGGTCTCTCTCTCTCTGCATAATTCCTGGCTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAATGTTCCAAGGTCTCTCTCTCTCTGCATAATTCCTGGCTGTAG  100

seq1  GTCTCTGTATTTGTTCCAACTTGCTGCAGGAGAAAATATAACTGCTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTATTTGTTCCAACTTGCTGCAGGAGAAAATATAACTGCTGGTA  150

seq1  GCTGAATTAAGCAAGGATCTTTGAGTATAGTAAAAAATCATTAGGAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATTAAGCAAGGATCTTTGAGTATAGTAAAAAATCATTAGGAGTCA  200

seq1  CTTAATCACTATGATTTTGTTTAGTTTTATTCAGACTATTATTTTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCACTATGATTTTGTTTAGTTTTATTCAGACTATTATTTTTGGTT  250

seq1  TTTATGTAAGTCACTTTATTATTTAGTCTCAGGCTTTTGGTCATCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAAGTCACTTTATTATTTAGTCTCAGGCTTTTGGTCATCCAAAT  300

seq1  AGTGGAGGGTATAAATTGCATTTTGTGGAGAGGGAAGGCTTCATATCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGGTATAAATTGCATTTTGTGGAGAGGGAAGGCTTCATATCAAG  350

seq1  TCAGCTACTTATTGGTTGGTTACTCTTAAAAGGTTTGTGTCACCATTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACTTATTGGTTGGTTACTCTTAAAAGGTTTGTGTCACCATTGTC  400

seq1  CTGACCATCAGGCCTCTATTATAGAACAGAAAGCTTGTGGCTGGCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATCAGGCCTCTATTATAGAACAGAAAGCTTGTGGCTGGCTTTGT  450

seq1  GTTTAGATCTTTCTTTTAGTAGCATGCAGAGCACATTTCTTTATTAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATCTTTCTTTTAGTAGCATGCAGAGCACATTTCTTTATTAATTG  500

seq1  CTTTCATATTGAAAGTAAAAGTCATACGCTGTACTCTGATCACATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATATTGAAAGTAAAAGTCATACGCTGTACTCTGATCACATTTTTT  550

seq1  TTTTGCTATTGCCAATTCCTCTCAGATCTCCATACCTTCATAGCCACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATTGCCAATTCCTCTCAGATCTCCATACCTTCATAGCCACCCA  600

seq1  AGTAAATGCCCCTTTCTTCACTCTCTTTTAATAAATACATGTATAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGCCCCTTTCTTCACTCTCTTTTAATAAATACATGTATAAACAA  650

seq1  AGAAAAAGAAACTCATATAAAAATAAACCTCACAGAAATACAAAATGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAACTCATATAAAAATAAACCTCACAGAAATACAAAATGGAA  700

seq1  AGGAAAAATATAAGAAAAATTAGAATAAGAATAATGATTCCCCAATAAAG  750
      ||| |||||||||| |||||||||||||||||||||||||||| ||||||
seq2  AGG-AAAATATAAG-AAAATTAGAATAAGAATAATGATTCCCC-ATAAAG  747

seq1  CAATATGAGACATAATAGACTACAAAAATATCATTGAGTTTATTTTGTGT  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  CAATATGAGACATAATAGACTAC-AAAATATCATTGAGTTTATTTTGTG-  795

seq1  TGACCAATTATTCCTGGATATGGCGATTACCCCAAATTATGGTTAATACA  850
      ||||| |||||||||||||||||||| ||||||||||||||  | ||| |
seq2  TGACC-ATTATTCCTGGATATGGCGA-TACCCCAAATTATG--TTATA-A  840

seq1  CCCCGTAAGACACCACTGGAGAATGTACTTTTTCTTTGCAAGGTGGTATC  900
      |||||| |||| ||||| ||| ||||||||||   |||||  ||||| ||
seq2  CCCCGT-AGACCCCACTTGAG-ATGTACTTTT--CTTGCA--GTGGT-TC  883

seq1  AGGTTATCTAACTTCTTGTTTAAGGGTAGAAGCCAACATCAAGTTTCCCA  950
      ||  ||| ||||| ||||||  |||| || |||| |||   ||||  |||
seq2  AG--TAT-TAACTCCTTGTT--AGGG-AG-AGCC-ACACTCAGTT--CCA  923

seq1  TCTCAGTACAGAGACATGTAGGTGAATTATGACCATTCCGGG  992
         || |||| ||| | ||||||||||||||| || ||||||
seq2  CTCCAATACA-AGA-AAGTAGGTGAATTATGAACA-TCCGGG  962

seq1: chr10_47545007_47546077
seq2: B6Ng01-024D09.g_70_1126 (reverse)

seq1  GTTTTTTCTGTGAGAGGGTAGGCCCCTCTAAGGTATCACCCCATCCTGGT  50
      |||||||||||| ||||  ||    || ||| |||||| ||||| |||||
seq2  GTTTTTTCTGTGGGAGGTAAG---TCTTTAA-GTATCA-CCCAT-CTGGT  44

seq1  ACATTAAGTCTCTGCAGGATTAGGCATATCTTCTCCCACTGCAGCCAGAT  100
      ||| |||||||||||| ||||| |||||||||||||||||||||||||||
seq2  ACA-TAAGTCTCTGCA-GATTA-GCATATCTTCTCCCACTGCAGCCAGAT  91

seq1  TATTTTAATATCATTGTGAAACTTTTAAACCTCTATGAATTTCTTGTGAA  150
      ||||||||||||| |||| ||||||| |||||||||||||||||||||||
seq2  TATTTTAATATCA-TGTG-AACTTTT-AACCTCTATGAATTTCTTGTGAA  138

seq1  TGAATGTGAAAAGGAGACAGTTGAACCCAGCCTTTTGGGTAGGTAGAAAT  200
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  TGAATGTG-AAAGGAGACAGTTGAACCCAG-CTTTTGGGTAGGTAGAAAT  186

seq1  AAATTATATAGTAGAAAGTGTTGCCTAGCATTTGGCCCCAGCTCTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATAGTAGAAAGTGTTGCCTAGCATTTGGCCCCAGCTCTTGGTA  236

seq1  GAATCCATATACTTATACTCCTAGGATCAAGGCCTCTATCTAGTTAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATATACTTATACTCCTAGGATCAAGGCCTCTATCTAGTTAGAGC  286

seq1  TTTTTTTGTGGGGATCATCTGACTCACTGAAGAAATTTCTACCTTGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTGGGGATCATCTGACTCACTGAAGAAATTTCTACCTTGTGGC  336

seq1  TAGTAGTGGAAACCAGAAACCGTGCATACCTAATTCTTGGCTCTCTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTGGAAACCAGAAACCGTGCATACCTAATTCTTGGCTCTCTACAG  386

seq1  AGTCTCTGTGTTTCTAATACAAAGAGGTCTTACCTAATTTTAAGAATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGTGTTTCTAATACAAAGAGGTCTTACCTAATTTTAAGAATGAG  436

seq1  AGAATTTCATGAAGTTCTTACAAAATGCATACTTGTTATTTATATCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCATGAAGTTCTTACAAAATGCATACTTGTTATTTATATCCATA  486

seq1  TACACTTGAAACTTCCAACTGAACGTCAGTATTGTCTTTCATTGTTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGAAACTTCCAACTGAACGTCAGTATTGTCTTTCATTGTTATCA  536

seq1  TGTCACTGATGATAATTTTATAGCTTTCCTCAGCATTTTTCAGGTAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGATGATAATTTTATAGCTTTCCTCAGCATTTTTCAGGTAGAGT  586

seq1  ACACTACTTACTGTGATACCATTCTGTACATATGTTTTTGTGGCACCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTTACTGTGATACCATTCTGTACATATGTTTTTGTGGCACCAGA  636

seq1  GGAGCCATTGAAGGAACTGTGGGGTGTAGGCCTGGGGCAAGAGTCAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATTGAAGGAACTGTGGGGTGTAGGCCTGGGGCAAGAGTCAGGTC  686

seq1  AAGGAAATCCAAACTCTAGAAATCTCATCCTGAGATCTGTAGGAATAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATCCAAACTCTAGAAATCTCATCCTGAGATCTGTAGGAATAGAA  736

seq1  TTCTCTCCGACACATATTCCCTGTGTCTGGGACTTCATGTTTCCAAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCGACACATATTCCCTGTGTCTGGGACTTCATGTTTCCAAGCAT  786

seq1  GTAACTTACCAGCCAACCCCCACCTCTGCCACTTTTGAGGTGGTCAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTACCAGCCAACCCCCACCTCTGCCACTTTTGAGGTGGTCAGAGA  836

seq1  GACTTATATCCAGGTTATATGGTAACTTCTTCCCACCTTATAAAGTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATATCCAGGTTATATGGTAACTTCTTCCCACCTTATAAAGTCATG  886

seq1  TCCAGAAACACCTGGAATACCTCTTCATGTAAGTAAGGCATTGCCAGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAACACCTGGAATACCTCTTCATGTAAGTAAGGCATTGCCAGGCC  936

seq1  ATTAGCCCTGACCAGTGTCCACTGACATATACTGAAGCCTGTGCCCACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCTGACCAGTGTCCACTGACATATACTGAAGCCTGTGCCCACTC  986

seq1  CCCAAAGTTTTAAGTAGCCTTTGTTCCCCACAATTAAAGAATGCTCAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTTTTAAGTAGCCTTTGTTCCCCACAATTAAAGAATGCTCAATG  1036

seq1  AAGTCTTTTTCTGGAGAATTC  1071
      |||||||||||||||||||||
seq2  AAGTCTTTTTCTGGAGAATTC  1057